Catalogue Search | MBRL
Search Results Heading
Explore the vast range of titles available.
MBRLSearchResults
-
DisciplineDiscipline
-
Is Peer ReviewedIs Peer Reviewed
-
Item TypeItem Type
-
SubjectSubject
-
YearFrom:-To:
-
More FiltersMore FiltersSourceLanguage
Done
Filters
Reset
208
result(s) for
"ADME analysis"
Sort by:
Integrated computational analysis of halogenated curcumin derivatives targeting GSK-3β: Pharmacokinetic, docking, MDS, and DFT approaches
by
Hameed, Madiha
,
Al-Otaibi, Jamelah Saleh
,
Mujtaba, Muhammad
in
ADME analysis
,
Curcumin derivatives
,
DFT studies
2025
Glycogen synthase kinase-3β (GSK-3β) is a multifunctional serine/threonine kinase involved in several diseases, such as cancer, diabetes, and neurodegenerative disorders. Its inhibition has gained significant attention as a potential therapeutic approach.
This study aimed to determine the inhibitory potential of halogenated curcumin derivatives against GSK-3β using comprehensive computational approaches.
ADME analysis, molecular docking, density functional theory calculations, and a 100 ns molecular dynamics simulation were performed. Pharmacokinetic parameters assessed drug-likeness properties, while electronic reactivity of the compounds was explored using DFT calculations. Molecular docking and MD simulation were conducted to examine binding energies and stability within the GSK-3β active site.
Both compounds showed favorable physicochemical properties, demonstrating high gastrointestinal absorption, favorable molecular mass, and zero Lipinski violations. None of the compounds were P-gp substrates, and only HC1 was able to cross the blood-brain barrier. Both compounds showed strong docking scores (HC2 –13.367, HC1 –11.034) and interaction energies (HC2 –78.049, HC1 –66.696), which were higher than those of the control inhibitors Elraglusib and Tideglusib. HC2 formed hydrogen bonds with LYS:585 and VAL:635, while HC1 formed one hydrogen bond with LYS:585. DFT calculations showed that HC2 was slightly reactive (ΔE = 3.537 eV) than HC1 (5.879 eV). In a 100 ns MD simulation time, HC2 maintained RMSD between 2.0–2.8 Å and HC1 between 1.5–3.5 Å, and minimal RMSF fluctuations in binding site residues, confirming stable protein-ligand interactions.
HC2 demonstrated better binding energy, electronic reactivity, and conformational stability compared to HC1, suggesting it as a promising GSK-3β inhibitor. However, further experimental validation is necessary to validate its therapeutic efficacy due to the inherent limitations of computational analyses.
Journal Article
Nanoparticles of a Pyrazolo-Pyridazine Derivative as Potential EGFR and CDK-2 Inhibitors: Design, Structure Determination, Anticancer Evaluation and In Silico Studies
by
Amr, Abd El-Galil E.
,
Naglah, Ahmed M.
,
Nossier, Eman S.
in
ADME analysis
,
Angiogenesis
,
Cancer therapies
2023
The strategic planning of this study is based upon using the nanoformulation method to prepare nanoparticles 4-SLNs and 4-LPHNPs of the previously prepared 4,5-diphenyl-1H-pyrazolo[3,4-c]pyridazin-3-amine (4) after confirming its structure with single crystal X-ray analysis. These nanoparticles exhibited promising cytotoxic activity against HepG-2, HCT-116 and MCF-7 cancer cell lines in comparison with the reference doxorubicin and the original derivative 4. Moreover, their inhibitory assessment against EGFR and CDK-2/cyclin A2 displayed improved and more favorable impact than the parent 4 and the references. Detection of their influence upon cancer biomarkers revealed upregulation of Bax, p53 and caspase-3 levels and downregulation of Bcl-2 levels. The docking simulation demonstrated that the presence of the pyrazolo[3,4-c]pyridazin-3-amine scaffold is amenable to enclosure and binding well within EGFR and CDK-2 receptors through different hydrophilic interactions. The pharmacokinetic and physicochemical properties of target 4 were also assessed with ADME investigation, and the outcome indicated good drug-like characteristics.
Journal Article
Zinc Coordination Compounds with Benzimidazole Derivatives: Synthesis, Structure, Antimicrobial Activity and Potential Anticancer Application
by
Szczesio, Małgorzata
,
Gobis, Katarzyna
,
Czylkowska, Agnieszka
in
Antifungal agents
,
Antimicrobial agents
,
Bacteria
2022
Developing new, smart drugs with the anticancer activity is crucial, especially for cancers, which cause the highest mortality in humans. In this paper we describe a series of coordination compounds with the element of health, zinc, and bioactive ligands, benzimidazole derivatives. By way of synthesis we have obtained four compounds named C1, C2, C4 and C4. Analytical analyses (elemental analysis (EA), flame atomic absorption spectrometry (FAAS)), spectroscopic (Fourier transform infrared spectroscopy (FT-IR), mass spectrometry (MS)) and thermogravimetric (TG) methods and the definition of crystal structures were used to explore the nature of bonding and to elucidate the chemical structures. The collected analytical data allowed the determination of the stoichiometry in coordination compounds, thermal stability, crystal structure and way of bonding. The cytotoxicity effect of the new compounds as a potential antitumor agent on the glioblastoma (T98G), neuroblastoma (SK-N-AS) and lung adenocarcinoma (A549) cell lines and human normal skin fibroblasts (CCD-1059Sk) was also determined. Cell viability was determined by the MTT assay. The results obtained confirmed that conversion of ligands into the respective metal complexes significantly improved their anticancer properties. The complexes were screened for antibacterial and antifungal activities. The ADME technique was used to determine the physicochemical and biological properties.
Journal Article
A Series of Isatin-Hydrazones with Cytotoxic Activity and CDK2 Kinase Inhibitory Activity: A Potential Type II ATP Competitive Inhibitor
by
Rahman, A. F. M. Motiur
,
Al-Salem, Huda S.
,
Arifuzzaman, Md
in
ADME analysis
,
ATP competitive inhibitor
,
Breast Neoplasms - drug therapy
2020
Isatin derivatives potentially act on various biological targets. In this article, a series of novel isatin-hydrazones were synthesized in excellent yields. Their cytotoxicity was tested against human breast adenocarcinoma (MCF7) and human ovary adenocarcinoma (A2780) cell lines using MTT assay. Compounds 4j (IC50 = 1.51 ± 0.09 µM) and 4k (IC50 = 3.56 ± 0.31) showed excellent activity against MCF7, whereas compound 4e showed considerable cytotoxicity against both tested cell lines, MCF7 (IC50 = 5.46 ± 0.71 µM) and A2780 (IC50 = 18.96± 2.52 µM), respectively. Structure-activity relationships (SARs) revealed that, halogen substituents at 2,6-position of the C-ring of isatin-hydrazones are the most potent derivatives. In-silico absorption, distribution, metabolism and excretion (ADME) results demonstrated recommended drug likeness properties. Compounds 4j (IC50 = 0.245 µM) and 4k (IC50 = 0.300 µM) exhibited good inhibitory activity against the cell cycle regulator CDK2 protein kinase compared to imatinib (IC50 = 0.131 µM). A molecular docking study of 4j and 4k confirmed both compounds as type II ATP competitive inhibitors that made interactions with ATP binding pocket residues, as well as lacking interactions with active state DFG motif residues.
Journal Article
Lipophilic Studies and In Silico ADME Profiling of Biologically Active 2-Aminothiazol-4(5H)-one Derivatives
by
Kosmalski, Tomasz
,
Studzińska, Renata
,
Baumgart, Szymon
in
Analysis
,
Cancer
,
Chromatography, High Pressure Liquid - methods
2023
Pseudothiohydantoin derivatives have a wide range of biological activities and are widely used in the development of new pharmaceuticals. Lipophilicity is a basic, but very important parameter in the design of potential drugs, as it determines solubility in lipids, nonpolar solvents, and makes it possible to predict the ADME profile. The aim of this study was to evaluate the lipophilicity of 28 pseudothiohydantoin derivatives showing the inhibition of 11β-hydroxysteroid dehydrogenase type 1 (11β-HSD1) using chromatographic methods. Experimentally, lipophilicity was determined by reverse phase thin layer chromatography (RP-TLC) and reverse phase high-performance liquid chromatography (RP-HPLC). In both methods, methanol was used as the organic modifier of the mobile phase. For each 2-aminothiazol-4(5H)-one derivative, a relationship was observed between the structure of the compound and the values of the lipophilicity parameters (log kw, RM0). Experimental lipophilicity values were compared with computer calculated partition coefficient (logP) values. A total of 27 of the 28 tested compounds had a lipophilicity value < 5, which therefore met the condition of Lipinski’s rule. In addition, the in silico ADME assay showed favorable absorption, distribution, metabolism, and excretion parameters for most of the pseudothiohydantoin derivatives tested. The study of lipophilicity and the ADME analysis indicate that the tested compounds are good potential drug candidates.
Journal Article
Novel 1,2,3-Triazole Erlotinib Derivatives as Potent IDO1 Inhibitors: Design, Drug-Target Interactions Prediction, Synthesis, Biological Evaluation, Molecular Docking and ADME Properties Studies
2022
Indoleamine 2,3-dioxygenase 1 (IDO1) plays a predominant role in cancer immunotherapy which catalyzes the initial and rate limiting steps of the kynurenine pathway as a key enzyme. To explore novel IDO1 inhibitors, five derivatives of erlotinib-linked 1,2,3-triazole compounds were designed by using a structure-based drug design strategy. Drug-target interactions (DTI) were predicted by DeePurpose, an easy-to-use deep learning library that contains more than 50 algorithms. The DTI prediction results suggested that the designed molecules have potential inhibitory activities for IDO1. Chemical syntheses and bioassays showed that the compounds exhibited remarkable inhibitory activities against IDO1, among them, compound e was the most potent with an IC 50 value of 0.32 ± 0.07 μM in the Hela cell assay. The docking model and ADME analysis exhibited that the effective interactions of these compounds with heme iron and better drug-likeness ensured the IDO1 inhibitory activities. The studies suggested that compound e was a novel and interesting IDO1 inhibitor for further development.
Journal Article
Combating the causative agent of amoebic keratitis, Acanthamoeba castellanii, using Padina pavonica alcoholic extract: toxicokinetic and molecular docking approaches
by
Abdel-Hakeem, Sara S.
,
Hassan, Faten A. M.
,
Hifney, Awatief F.
in
631/326
,
631/326/417
,
631/601
2024
Natural products play a significant role in providing the current demand as antiparasitic agents, which offer an attractive approach for the discovery of novel drugs. The present study aimed to evaluate in vitro the potential impact of seaweed
Padina pavonica
(
P
.
pavonica
) extract in combating
Acanthamoeba castellanii
(
A. castellanii
). The phytochemical constituents of the extract were characterized by Gas chromatography–mass spectrometry. Six concentrations of the algal extract were used to evaluate its antiprotozoal activity at various incubation periods. Our results showed that the extract has significant inhibition against trophozoites and cysts viability, with complete inhibition at the high concentrations. The IC
50
of
P. pavonica
extract was 4.56 and 4.89 µg/mL for trophozoites and cysts, respectively, at 24 h. Morphological alterations of
A. castellanii
trophozoites/cysts treated with the extract were assessed using inverted and scanning electron microscopes and showed severe damage features upon treatment with the extract at different concentrations. Molecular Docking of extracted compounds against
Acanthamoeba
cytochrome P450 monooxygenase (AcCYP51) was performed using Autodock vina1.5.6. A pharmacokinetic study using SwissADME was also conducted to investigate the potentiality of the identified bioactive compounds from
Padina
extract to be orally active drug candidates. In conclusion, this study highlights the in vitro amoebicidal activity of
P. pavonica
extract against
A. castellanii
adults and cysts and suggests potential AcCYP51 inhibition.
Journal Article
In silico exploration of anticancer plant phytochemicals for EGFR-targeted lung cancer therapy
by
Rahman, Mohammad Sheikh Farider
,
Hossain, Sharika
,
Sarkar, Bidduth Kumar
in
Antineoplastic Agents, Phytogenic - chemistry
,
Antineoplastic Agents, Phytogenic - pharmacology
,
Binding sites
2025
Mutations in the epidermal growth factor receptor (EGFR), particularly in the tyrosine kinase domain such as exon 19 deletions and the L858R point mutation, play a critical role in the development of non-small cell lung cancer (NSCLC). EGFR is a well-established therapeutic target in the management of NSCLC. In this study, we targeted the mutated EGFR kinase domain (L858R) using its crystal structure (PDB ID: 2EB3) to design EGFR tyrosine kinase inhibitors. We curated a library of 687 phytoconstituents from four anticancer plants (
Camellia sinensis
,
Curcuma longa
,
Ginkgo biloba
, and
Vitis vinifera
) using the IMPPAT database. Kaempferol, morin, and isorhamnetin, all from
Ginkgo biloba
, emerged as promising candidates. Drug-likeness and ADMET analyses were performed to evaluate the pharmacokinetic and safety profiles of these compounds. Pharmacophore modeling and bioactivity score analysis were also conducted. Finally, molecular dynamics (MD) simulations were performed to assess the stability of the EGFR-ligand complexes. The docking studies revealed high binding energies for kaempferol (− 8.5 kcal/mol), morin (− 8.5 kcal/mol), and isorhamnetin (− 8.7 kcal/mol) with the ATP-binding site of EGFR, compared to the reference drug, erlotinib (− 7 kcal/mol). These compounds exhibited superior pharmacokinetic properties, including high gastrointestinal absorption and non-inhibition of P-glycoprotein activity, unlike erlotinib. Toxicity predictions showed mild immunotoxicity for morin and isorhamnetin, with all compounds demonstrating no hepatotoxicity and no inhibition of CYP3A4 or CYP2D6 enzymes. Structural analysis highlighted the hydroxyl groups in the selected compounds as key for hydrogen bond (H-bond) formation with EGFR residues, enhancing their inhibitory potential. MD simulations confirmed the stability of EGFR complexes with the selected compounds, showing lower average RMSD values and better convergence compared to the EGFR-erlotinib complex. This research underscores the potential of kaempferol, morin, and isorhamnetin as novel EGFR inhibitors derived from
Ginkgo biloba
for NSCLC treatment. These compounds demonstrated strong binding affinities, favorable pharmacokinetic properties, and stability in silico. Further in vitro and in vivo validation is necessary to confirm their efficacy against mutated EGFR in NSCLC.
Journal Article
Copper(II) Complexes with 1-(Isoquinolin-3-yl)heteroalkyl-2-ones: Synthesis, Structure and Evaluation of Anticancer, Antimicrobial and Antioxidant Potential
by
Hering, Anna
,
Bednarski, Patrick J.
,
Kornicka, Anita
in
Antimicrobial agents
,
Antioxidants
,
Apoptosis
2023
Four copper(II) complexes, C1–4, derived from 1-(isoquinolin-3-yl)heteroalkyl-2-one ligands L1–4 were synthesized and characterized using an elemental analysis, IR spectroscopic data as well as single crystal X-ray diffraction data for complex C1. The stability of complexes C1–4 under conditions mimicking the physiological environment was estimated using UV-Vis spectrophotometry. The antiproliferative activity of both ligands L1–4 and copper(II) compounds C1–4 were evaluated using an MTT assay on four human cancer cell lines, A375 (melanoma), HepG2 (hepatoma), LS-180 (colon cancer) and T98G (glioblastoma), and a non-cancerous cell line, CCD-1059Sk (human normal skin fibroblasts). Complexes C1–4 showed greater potency against HepG2, LS180 and T98G cancer cell lines than etoposide (IC50 = 5.04–14.89 μg/mL vs. IC50 = 43.21–>100 μg/mL), while free ligands L1–4 remained inactive in all cell lines. The prominent copper(II) compound C2 appeared to be more selective towards cancer cells compared with normal cells than compounds C1, C3 and C4. The treatment of HepG2 and T98G cells with complex C2 resulted in sub-G1 and G2/M cell cycle arrest, respectively, which was accompanied by DNA degradation. Moreover, the non-cytotoxic doses of C2 synergistically enhanced the cytotoxic effects of chemotherapeutic drugs, including etoposide, 5-fluorouracil and temozolomide, in HepG2 and T98G cells. The antimicrobial activities of ligands L2–4 and their copper(II) complexes C2–4 were evaluated using different types of Gram-positive bacteria, Gram-negative bacteria and yeast species. No correlation was found between the results of the antiproliferative and antimicrobial experiments. The antioxidant activities of all compounds were determined using the DPPH and ABTS radical scavenging methods. Antiradical tests revealed that among the investigated compounds, copper(II) complex C4 possessed the strongest antioxidant properties. Finally, the ADME technique was used to determine the physicochemical and drug-likeness properties of the obtained complexes.
Journal Article
In Silico ADME and Toxicity Prediction of Benzimidazole Derivatives and Its Cobalt Coordination Compounds. Synthesis, Characterization and Crystal Structure
by
Czylkowska, Agnieszka
,
Gobis, Katarzyna
,
Świątkowski, Marcin
in
benzimidazole derivatives
,
Benzimidazoles - chemistry
,
cancer chemotherapy
2022
As a result of the synthesis, three new solids, cobalt (II) coordination compounds with benzimidazole derivatives, and chlorides were obtained. The ligands that were used in the synthesis were specially synthesized and were commercially unavailable. During the synthesis, a single crystal of the complex with the L1 ligand was obtained and the crystal structure was refined. All coordination compounds were characterized by elemental analysis, infrared spectroscopy, and thermogravimetric analysis. All the obtained data allowed one to determine the formulas of the new compounds, as well as to determine the method of metal–ligand coordination. Thermal analysis allowed to know the temperature stability of the compounds, solids intermediate and final products of pyrolysis. Additionally, volatile decomposition and fragmentation products have been identified. The toxicity of the compounds and their bioavailability were determined using in silico methods. By predicting activity on cell lines, the potential use of compounds as chemotherapeutic agents has been specified. The blood-brain barrier crossing and the gastrointestinal absorption were defined. Pharmaceutical biodistribution was also simulated.
Journal Article