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A central hypothesis of eco-immunology proposes trade-offs between immune defences and competing physiological and behavioural processes, leading to immunological variation within and among annual-cycle stages, as has been revealed for some species. However, few studies have simultaneously investigated patterns of multiple immune indices over the entire annual cycle in free-living birds, and none has investigated the consistency of seasonal patterns across multiple years. We quantified lysis, agglutination, haptoglobin, leukocyte profiles, and body mass in free-living skylarks (Alauda arvensis) through two complete annual cycles and within and between four breeding seasons. The skylarks' annual cycle is characterised by annually repeated changes in energy and time budgets, social structure and diet. If trade-offs relating to these cyclic changes shape evolution, predictable intra-annual immune patterns may result. Alternatively, intra-annual immune patterns may vary among years if fluctuating environmental changes affect the cost-benefit balances of immune function. We found significant variation in immune indices and body mass across the annual cycle, and these patterns differed between years. Immune parameters differed between four breeding seasons, and in all years, lysis and agglutination increased as the season progressed independent of average levels. Population-level patterns (intra-annual, inter-annual, within breeding season) were consistent with within-individual patterns based on repeated measurements. We found little evidence for sex differences, and only haptoglobin was correlated (negatively) with body mass. We conclude that immune modulation is not simply a pre-programmed phenomenon that reflects predictable ecological changes. Instead, fluctuating environmental conditions that vary among years likely contribute to the immunological variation that we observed.

Lunar cycle and moonlight exposure have significant impacts on animal behaviour and physiology. The presence or absence of moonlight, along with predictable changes in brightness throughout the lunar cycle, can shape reproduction, foraging, communication, and other aspects of an animal’s world. While it has been shown that invertebrates use the moonlight for orientation, little is known on the effect of the lunar cycle on migratory birds. We found that the lunar cycle affected the nocturnal migration activity of a diurnal songbird species, the Eurasian Skylark Alauda arvensis. The occurrence of birds increased with moon fraction, moonlight intensity and duration, while abundance correlated positively with increasing moonlight intensity. Our findings of increased migration activity in bright nights around full moon contradict previous assumptions that small bird migrants would avoid such nights due to increased predation pressure and decreased visibility of stars for orientation. We argue that migrants relying on visual cues for orientation might favour moonlit nights, while future studies should also test whether the position of the moon can be used for navigation by birds.

Many animal species have populations in which some individuals migrate and others remain on the breeding grounds. This phenomenon is called partial migration. Despite substantial theoretical work, empirical data on causes and consequences of partial migration remain scarce, mainly because of difficulties associated with tracking individuals over large spatial scales. We used stable hydrogen isotopes in claw material to determine whether skylarks Alauda arvensis from a single breeding population in the Netherlands had migrated or remained resident in the previous winter and investigated whether there were causes or consequences of either strategy. Age and sex had no influence on the propensity to migrate, but larger individuals were more likely to be residents. The wintering strategy was not fixed within individuals. Up to 45% of individuals measured in multiple years switched strategies. Reproductive parameters were not related to the wintering strategy, but individuals that wintered locally experienced lower future return rates, and this was directly correlated with two independent measures of immune function. Our results suggest that partial migration in skylarks is based neither on genetic dimorphism nor on an age- and sex-dependent condition. Instead, the wintering strategy is related to structural size and immune function. These new insights on causes and consequences of partial migration advance our understanding of the ecology, evolution, and coexistence of different life-history strategies.

Agent-based simulation models provide a viable approach for developing applied models of species and systems for predictive management. However, there has been some reluctance to use these models for policy applications due to complexity and the need for improved testing and communication of the models. We present the development and testing of a comprehensive model for Skylark (Alauda arvensis) in Danish agricultural landscapes. The model is part of the ALMaSS system, which considers not only individual skylarks, but also the detailed dynamic environment from which they obtain the information necessary to simulate their behaviour. Population responses emerge from individuals interacting with each other and the environment. Model development and testing was carried out using pattern-oriented modelling. The testing procedure was based on the model's ability to represent detailed real world patterns of distribution and density, reproductive performance and seasonal changes in territory numbers. Data to support this was collected over a 13-year period and comprised detailed field observations of breeding birds and intensive surveys. The model was able to recreate the real world data patterns accurately; it was also able to simultaneously fit a number of other secondary system properties which were not formally a part of the testing procedure. The correspondence of model output to real world data and sensitivity analysis are presented and discussed, and the model's description is provided in ODdox format (a formal description inter-linked to the program code). Detailed and stringent tests for model performance were carried out, and standardised model description and open access to the source code were provided to open development of the skylark model to others. Over and above documenting the utility of the model, this open process is essential to engender the user trust and ensure continued development of these comprehensive systems for applied purposes.

1. There has been a rapid increase in the development of renewable energy because of the need to combat climate change. One of the most widely used technologies has been onshore wind farms.These have the potential to affect birds through disturbance or collision, but the extent to which such developments cause general population declines, and therefore are of wider conservation concern, remains largely untested. 2. Monitoring data from wind farms located on unenclosed upland habitats in the UK were collated to test whether breeding densities of upland birds were reduced as a result of wind farm construction or during wind farm operation. 3. Data were available for ten species although none were raptors. Red grouse Lagopus lagopus scoticus, snipe Gallinago gallinago and curlew Numenius arquata densities all declined on wind farms during construction. Red grouse densities recovered after construction, but snipe and curlew densities did not. Post-construction curlew densities on wind farms were also significantly lower than reference sites. Conversely, densities of skylark A lauda arvensis and stonechat Saxícola torquata increased on wind farms during construction. 4. There was little evidence for consistent post-construction population declines in any species, suggesting for the first time that wind farm construction can have greater impacts upon birds than wind farm operation. 5. The impacts of wind farms were largely unaffected by technical specifications (turbine height, number or total generating power) and therefore are widely applicable. 6.Synthesis and applications.This study confirms that regulatory authorities and developers should particularly consider the likely impacts of wind farms on large waders. Greater weight should be given to the effects of construction on wildlife in impact assessments than at present. Mitigation measures during construction, including restricting construction activity to non-breeding periods, should be considered and tested as a means to reduce these negative effects.

Threats to biodiversity resulting from habitat destruction and deterioration have been documented for many species, whilst climate change is regarded as increasingly impacting upon species' distribution and abundance. However, few studies have disentangled the relative importance of these two drivers in causing recent population declines. We quantify the relative importance of both processes by modelling annual variation in population growth of 18 farmland bird species in the UK as a function of measures of land-use intensity and weather. Modelled together, both had similar explanatory power in accounting for annual fluctuations in population growth. When these models were used to retrodict population trends for each species as a function of annual variation in land-use intensity and weather combined, and separately, retrodictions incorporating land-use intensity were more closely linked to observed population trends than retrodictions based only on weather, and closely matched the UK farmland bird index from 1970 onwards. Despite more stable land-use intensity in recent years, climate change (inferred from weather trends) has not overtaken land-use intensity as the dominant driver of bird populations.

Background Working toward a general framework to understand the role of microbiota in animal biology requires the characterisation of animal-associated microbial communities and identification of the evolutionary and ecological factors shaping their variation. In this study, we described the microbiota in the cloaca, brood patch skin and feathers of two species of birds and the microbial communities in their nest environment. We compared patterns of resemblance between these microbial communities at different levels of biological organisation (species, individual, body part) and investigated the phylogenetic structure to deduce potential microbial community assembly processes. Results Using 16S rRNA gene amplicon data of woodlarks ( Lullula arborea ) and skylarks ( Alauda arvensis ), we demonstrated that bird- and nest-associated microbiota showed substantial OTU co-occurrences and shared dominant taxonomic groups, despite variation in OTU richness, diversity and composition. Comparing host species, we uncovered that sympatric woodlarks and skylarks harboured similar microbiota, dominated by Proteobacteria, Firmicutes, Actinobacteria, Bacteroidetes and Acidobacteria. Yet, compared with the nest microbiota that showed little variation, each species’ bird-associated microbiota displayed substantial variation. The latter could be partly (~ 20%) explained by significant inter-individual differences. The various communities of the bird’s body (cloaca, brood patch skin and feathers) appeared connected with each other and with the nest microbiota (nest lining material and surface soil). Communities were more similar when the contact between niches was frequent or intense. Finally, bird microbiota showed significant phylogenetic clustering at the tips, but not at deeper branches of the phylogeny. Conclusions Our interspecific comparison suggested that the environment is more important than phylogeny in shaping the bird-associated microbiotas. In addition, variation among individuals and among body parts suggested that intrinsic or behavioural differences among females and spatial heterogeneity among territories contributed to the microbiome variation of larks. Modest but significant phylogenetic clustering of cloacal, skin and feather microbiotas suggested weak habitat filtering in these niches. We propose that lark microbiota may be primarily, but not exclusively, shaped by horizontal acquisition from the regional bacterial pool at the breeding site. More generally, we hypothesise that the extent of ecological niche-sharing by avian (or other vertebrate) hosts may predict the convergence of their microbiota.

We describe and discuss species of Plasmodium with four nuclei arranged in doublets or forming a maltese cross and loose, residual cytoplasm, described from Passer hispaniolensis in Algeria. The following species are described: Plasmodium rouxi from Alauda arvensis , from France Plasmodium mohammedi sp. nov. from Passer domesticus biblicus and Plasmodium pachysomum sp. nov. from Anthus campestris , from Israel, Plasmodium pfefferi sp. nov. from Pica pica and Plasmodium sergentorum sp. nov. from Alauda arvensis and Pica pica from France and Plasmodium stellatum sp. nov. from Muscicapa striata from Israel. All species vary in the spatial position of their four nuclei and the presence or absence of refractile, blue-staining globules. All of the described species differ from P. vaughani Novy et Mac Neal, 1904 and its siblings (example: P. vaughani merulae Corradetti et Scanga, 1973) in their number of merozoites (always four versus four to eight in the latter) and their spatial arrangement in the schizont.

1. Increasing concern over the environmental impact of agriculture in Europe has led to the introduction of agri-environment schemes. These schemes compensate farmers financially for any loss of income associated with measures that aim to benefit the environment or biodiversity. There are currently agri-environment schemes in 26 out of 44 European countries. 2. Agri-environment schemes vary markedly between countries even within the European Union. The main objectives include reducing nutrient and pesticide emissions, protecting biodiversity, restoring landscapes and preventing rural depopulation. In virtually all countries the uptake of schemes is highest in areas of extensive agriculture where biodiversity is still relatively high and lowest in intensively farmed areas where biodiversity is low. 3. Approximately €24.3 billion has been spent on agri-environment schemes in the European Union (EU) since 1994, an unknown proportion of it on schemes with biodiversity conservation aims. We carried out a comprehensive search for studies that test the effectiveness of agri-environment schemes in published papers or reports. Only 62 evaluation studies were found originating from just five EU countries and Switzerland (5). Indeed 76% of the studies were from the Netherlands and the United Kingdom, where until now only c. 6% of the EU agri-environmental budget has been spent. Other studies were from Germany (6), Ireland (3) and Portugal (1). 4. In the majority of studies, the research design was inadequate to assess reliably the effectiveness of the schemes. Thirty-one percent did not contain a statistical analysis. Where an experimental approach was used, designs were usually weak and biased towards giving a favourable result. The commonest experimental design (37% of the studies) was a comparison of biodiversity in agri-environment schemes and control areas. However, there is a risk of bias if either farmers or scheme co-ordinators select the sites for agri-environment schemes. In such cases the sites are likely to have a higher biodiversity at the outset compared to the controls. This problem may be addressed by collecting baseline data (34% of studies), comparing trends (32%) or changes (26%) in biodiversity between areas with and without schemes or by pairing scheme and control sites that experience similar environmental conditions (16%). 5. Overall, 54% of the examined species (groups) demonstrated increases and 6% decreases in species richness or abundance compared with controls. Seventeen percent showed increases for some species and decreases for other species, while 23% showed no change at all in response to agri-environment schemes. The response varied between taxa. Of 19 studies examining the response of birds that included a statistical analysis, four showed significant increases in species richness or abundance, two showed decreases and nine showed both increases and decreases. Comparative figures for 20 arthropod studies yielded 11 studies that showed an increase in species richness or abundance, no study showed a decrease and three showed both increases and decreases. Fourteen plant studies yielded six studies that showed increases in species richness or abundance, two showed decreases and no study showed both increases and decreases. 6. Synthesis and applications. The lack of robust evaluation studies does not allow a general judgement of the effectiveness of European agri-environment schemes. We suggest that in the future, ecological evaluations must become an integral part of any scheme, including the collection of baseline data, the random placement of scheme and control sites in areas with similar initial conditions, and sufficient replication. Results of these studies should be collected and disseminated more widely, in order to identify the approaches and prescriptions that best deliver biodiversity enhancement and value for money from community support.

Field research techniques are constantly evolving to meet the needs of the scientific community. There is a growing need for field biology studies to shift towards increasing efficiency and quality of results while simultaneously decreasing cost in both the researcher's time and resources. I tested the efficacy of using multiple recorded birdcall lures (n = 172 species) to improve mist-net captures at a subtropical African savanna setting. Capture success was compared between passive and birdcall enhanced mist-nets during winter and summer seasons. Results suggest that the use of birdcalls does significantly increase the total number of birds caught in both seasons and also increases the diversity of passerine species. Conventional passive mist-nets without an audio lure were initially productive but their capture rate subsequently decreased as sampling days progressed. Birdcall lure enhanced mist-nets had a constant capture output during the summer season. The most responsive birds to audio lures were gregarious species (e.g. Pycnonotus barbatus, Dryoscopus cubla, Prionops plumatus, Phoeniculus purpureus, Turdoides jardineii and Lamprotornis chalybaeus) and the aggressive Dicrurus adsimilis and Acridotheres tristis. I conclude that birdcall lures can be used in summer and winter seasons to improve mist-net captures especially for studies focusing on gregarious and aggressive passerine species in a sub-tropical African savanna setting.