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4,053
result(s) for
"Aliphatic compounds"
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Catalytic asymmetric hydroamination of unactivated internal olefins to aliphatic amines
by
Niu, Dawen
,
Liu, Peng
,
Shi, Shi-Liang
in
Agrochemicals
,
Aliphatic amines
,
Aliphatic compounds
2015
Catalytic assembly of enantiopure aliphatic amines from abundant and readily available precursors has long been recognized as a paramount challenge in synthetic chemistry. Here, we describe a mild and general copper-catalyzed hydroamination that effectively converts unactivated internal olefins—an important yet unexploited class of abundant feedstock chemicals—into highly enantioenriched α-branched amines (≥96% enantiomeric excess) featuring two minimally differentiated aliphatic substituents. This method provides a powerful means to access a broad range of advanced, highly functionalized enantioenriched amines of interest in pharmaceutical research and other areas.
Journal Article
COMPARATIVE STUDY OF IONIZATION CONSTANTS AND STRUCTURAL PROPERTIES OF OXIDATIVE AND PHENOLIC ACIDS USING AM1 AND DFT METHODS
A theoretical study of the ionization constant (Ka) of ten oximic and phenolic acids derived from aromatic and aliphatic compounds was conducted. The factors influencing the ionization constant were investigated using two quantum mechanical methods: semi-empirical calculations (Austin AM1) and ab initio calculations (DFT), both implemented in ChemOffice 2018. AM1 and DFT are valuable tools for calculating physical properties of oximic and phenolic acids. The validity of these methods was assessed by comparing the theoretically calculated variables. These variables (quantities susceptible to change within a mathematical context) were analyzed to determine which method provided more accurate results and to establish relationships between them. The calculated ionization constants were then correlated with experimental values through simple and multiple statistical analysis. The strong correlations obtained, indicated by high R2 values, validated the theoretical approach. Multiple statistical analysis revealed that the most influential variables for the ionization constant are the Highest Occupied Molecular Orbital (HOMO) energy, the Mulliken charge on the nitrogen atom at position 2 (MC-N2) and van der Waals interactions (Bend VDW). Other variables were excluded due to negligible or zero coefficients. These selected variables were used to establish a predictive relationship. The correlation coefficients obtained were 0.9902 for AM1 and 0.7306 for DFT. Comparison with experimental values demonstrated that the AM1 results closely matched the experimental data.
Journal Article
Catalyst-controlled doubly enantioconvergent coupling of racemic alkyl nucleophiles and electrophiles
by
Gorsline, Bradley J.
,
Huo, Haohua
,
Fu, Gregory C.
in
Aliphatic compounds
,
Amides
,
Aromatic compounds
2020
Stereochemical control in the construction of carbon-carbon bonds between an alkyl electrophile and an alkyl nucleophile is a persistent challenge in organic synthesis. Classical substitution reactions via SN1 and SN2 pathways are limited in their ability to generate carbon-carbon bonds (inadequate scope, due to side reactions such as rearrangements and eliminations) and to control stereochemistry when beginning with readily available racemic starting materials (racemic products). Here, we report a chiral nickel catalyst that couples racemic electrophiles (propargylic halides) with racemic nucleophiles (β-zincated amides) to form carbon-carbon bonds in doubly stereoconvergent processes, affording a single stereoisomer of the product from two stereochemical mixtures of reactants.
Journal Article
Direct arylation of strong aliphatic C–H bonds
by
Brewer, Thomas F.
,
Schultz, Danielle M.
,
DiRocco, Daniel A.
in
140/131
,
639/638/403/933
,
639/638/439/890
2018
Despite the widespread success of transition-metal-catalysed cross-coupling methodologies, considerable limitations still exist in reactions at
sp
3
-hybridized carbon atoms, with most approaches relying on prefunctionalized alkylmetal or bromide coupling partners
1
,
2
. Although the use of native functional groups (for example, carboxylic acids, alkenes and alcohols) has improved the overall efficiency of such transformations by expanding the range of potential feedstocks
3
–
5
, the direct functionalization of carbon–hydrogen (C–H) bonds—the most abundant moiety in organic molecules—represents a more ideal approach to molecular construction. In recent years, an impressive range of reactions that form C(
s
p
3
)–heteroatom bonds from strong C–H bonds has been reported
6
,
7
. Additionally, valuable technologies have been developed for the formation of carbon–carbon bonds from the corresponding C(
sp
3
)–H bonds via substrate-directed transition-metal C–H insertion
8
, undirected C–H insertion by captodative rhodium carbenoid complexes
9
, or hydrogen atom transfer from weak, hydridic C–H bonds by electrophilic open-shell species
10
–
14
. Despite these advances, a mild and general platform for the coupling of strong, neutral C(
s
p
3
)–H bonds with aryl electrophiles has not been realized. Here we describe a protocol for the direct C(
sp
3
) arylation of a diverse set of aliphatic, C–H bond-containing organic frameworks through the combination of light-driven, polyoxometalate-facilitated hydrogen atom transfer and nickel catalysis. This dual-catalytic manifold enables the generation of carbon-centred radicals from strong, neutral C–H bonds, which thereafter act as nucleophiles in nickel-mediated cross-coupling with aryl bromides to afford C(
sp
3
)–C(
sp
2
) cross-coupled products. This technology enables unprecedented, single-step access to a broad array of complex, medicinally relevant molecules directly from natural products and chemical feedstocks through functionalization at sites that are unreactive under traditional methods.
Direct coupling of aliphatic C–H nucleophiles to aryl electrophiles is described, through the combination of light-driven polyoxometalate hydrogen atom transfer and nickel catalysis.
Journal Article
Organic Matter Preserved in 3-Billion-Year-Old Mudstones at Gale Crater, Mars
by
Ming, Doug W.
,
Glavin, Daniel P.
,
Eigenbrode, Jennifer L.
in
Aliphatic compounds
,
Aromatic compounds
,
Astrophysics
2018
Establishing the presence and state of organic matter, including its possible biosignatures, in martian materials has been an elusive quest, despite limited reports of the existence of organic matter on Mars. We report the in situ detection of organic matter preserved in lacustrine mudstones at the base of the ~3.5-billion-year-old Murray formation at Pahrump Hills, Gale crater, by the Sample Analysis at Mars instrument suite onboard the Curiosity rover. Diverse pyrolysis products, including thiophenic, aromatic, and aliphatic compounds released at high temperatures (500° to 820°C), were directly detected by evolved gas analysis. Thiophenes were also observed by gas chromatography–mass spectrometry. Their presence suggests that sulfurization aided organic matter preservation. At least 50 nanomoles of organic carbon persists, probably as macromolecules containing 5% carbon as organic sulfur molecules.
Journal Article
Evaluation of Developmental Toxicity, Developmental Neurotoxicity, and Tissue Dose in Zebrafish Exposed to GenX and Other PFAS
by
Schmid, Judith
,
Gaballah, Shaza
,
Hines, Erin
in
Acids
,
Aliphatic compounds
,
Ammonium perfluorooctanoate
2020
Per- and polyfluoroalkyl substances (PFAS) are a diverse class of industrial chemicals with widespread environmental occurrence. Exposure to long-chain PFAS is associated with developmental toxicity, prompting their replacement with short-chain and fluoroether compounds. There is growing public concern over the safety of replacement PFAS.
We aimed to group PFAS based on shared toxicity phenotypes.
Zebrafish were developmentally exposed to 4,8-dioxa-3H-perfluorononanoate (ADONA), perfluoro-2-propoxypropanoic acid (GenX Free Acid), perfluoro-3,6-dioxa-4-methyl-7-octene-1-sulfonic acid (PFESA1), perfluorohexanesulfonic acid (PFHxS), perfluorohexanoic acid (PFHxA), perfluoro-
-octanoic acid (PFOA), perfluorooctanesulfonic acid (PFOS), or 0.4% dimethyl sulfoxide (DMSO) daily from 0-5 d post fertilization (dpf). At 6 dpf, developmental toxicity and developmental neurotoxicity assays were performed, and targeted analytical chemistry was used to measure media and tissue doses. To test whether aliphatic sulfonic acid PFAS cause the same toxicity phenotypes, perfluorobutanesulfonic acid (PFBS; 4-carbon), perfluoropentanesulfonic acid (PFPeS; 5-carbon), PFHxS (6-carbon), perfluoroheptanesulfonic acid (PFHpS; 7-carbon), and PFOS (8-carbon) were evaluated.
PFHxS or PFOS exposure caused failed swim bladder inflation, abnormal ventroflexion of the tail, and hyperactivity at nonteratogenic concentrations. Exposure to PFHxA resulted in a unique hyperactivity signature. ADONA, PFESA1, or PFOA exposure resulted in detectable levels of parent compound in larval tissue but yielded negative toxicity results. GenX was unstable in DMSO, but stable and negative for toxicity when diluted in deionized water. Exposure to PFPeS, PFHxS, PFHpS, or PFOS resulted in a shared toxicity phenotype characterized by body axis and swim bladder defects and hyperactivity.
All emerging fluoroether PFAS tested were negative for evaluated outcomes. Two unique toxicity signatures were identified arising from structurally dissimilar PFAS. Among sulfonic acid aliphatic PFAS, chemical potencies were correlated with increasing carbon chain length for developmental neurotoxicity, but not developmental toxicity. This study identified relationships between chemical structures and
phenotypes that may arise from shared mechanisms of PFAS toxicity. These data suggest that developmental neurotoxicity is an important end point to consider for this class of widely occurring environmental chemicals. https://doi.org/10.1289/EHP5843.
Journal Article
Hydrogenation of fluoroarenes
by
Nairoukh, Zackaria
,
Li, Wei
,
Wiesenfeldt, Mario P.
in
Aliphatic compounds
,
Aromatic compounds
,
Benzofuran
2017
All-cis-multifluorinated cycloalkanes exhibit intriguing electronic properties. In particular, they display extremely high dipole moments perpendicular to the aliphatic ring, making them highly desired motifs in material science. Very few such motifs have been prepared, as their syntheses require multistep sequences from diastereoselectively prefunctionalized precursors. Herein we report a synthetic strategy to access these valuable materials via the rhodium–cyclic (alkyl)(amino)carbene (CAAC)–catalyzed hydrogenation of readily available fluorinated arenes in hexane. This route enables the scalable single-step preparation of an abundance of multisubstituted and multifluorinated cycloalkanes, including all-cis-1,2,3,4,5,6-hexafluorocyclohexane as well as cis-configured fluorinated aliphatic heterocycles.
Journal Article
Photo-produced aromatic compounds stimulate microbial degradation of dissolved organic carbon in thermokarst lakes
2023
Photochemical and biological degradation of dissolved organic carbon (DOC) and their interactions jointly contribute to the carbon dioxide released from surface waters in permafrost regions. However, the mechanisms that govern the coupled photochemical and biological degradation of DOC are still poorly understood in thermokarst lakes. Here, by combining Fourier transform ion cyclotron resonance mass spectrometry and microbial high-throughput sequencing, we conducted a sunlight and microbial degradation experiment using water samples collected from 10 thermokarst lakes along a 1100-km permafrost transect. We demonstrate that the enhancement of sunlight on DOC biodegradation is not associated with the low molecular weight aliphatics produced by sunlight, but driven by the photo-produced aromatics. This aromatic compound-driven acceleration of biodegradation may be attributed to the potential high abilities of the microbes to decompose complex compounds in thermokarst lakes. These findings highlight the importance of aromatics in regulating the sunlight effects on DOC biodegradation in permafrost-affected lakes.
The mechanism of photochemical and biological degradation of DOC is unclear, especially in thermokarst lakes. Here, the authors find that photo-produced aromatic compounds rather than aliphatic compounds stimulate the microbial degradation of DOC.
Journal Article
The merger of decatungstate and copper catalysis to enable aliphatic C(sp3)–H trifluoromethylation
by
Sarver, Patrick J
,
DiRocco, Daniel A
,
Bacauanu Vlad
in
Aliphatic compounds
,
Amines
,
Biological properties
2020
The introduction of a trifluoromethyl (CF3) group can dramatically improve a compound’s biological properties. Despite the well-established importance of trifluoromethylated compounds, general methods for the trifluoromethylation of alkyl C–H bonds remain elusive. Here we report the development of a dual-catalytic C(sp3)–H trifluoromethylation through the merger of light-driven, decatungstate-catalysed hydrogen atom transfer and copper catalysis. This metallaphotoredox methodology enables the direct conversion of both strong aliphatic and benzylic C–H bonds into the corresponding C(sp3)–CF3 products in a single step using a bench-stable, commercially available trifluoromethylation reagent. The reaction requires only a single equivalent of substrate and proceeds with excellent selectivity for positions distal to unprotected amines. To demonstrate the utility of this new methodology for late-stage functionalization, we have directly derivatized a broad range of approved drugs and natural products to generate valuable trifluoromethylated analogues. Preliminary mechanistic experiments reveal that a ‘Cu–CF3’ species is formed during this process and the critical C(sp3)–CF3 bond-forming step involves the copper catalyst.Despite the importance of trifluoromethylated compounds, direct catalytic methods for the conversion of C(sp3)–H bonds into the corresponding C(sp3)–CF3 analogues have remained elusive. This transformation has now been achieved by the merger of copper catalysis with decatungstate photocatalysis, enabling the C(sp3)–H trifluoromethylation of abundant feedstocks, natural products and pharmaceuticals.
Journal Article
Characterization and engineering of a plastic-degrading aromatic polyesterase
by
Omari, Kamel El
,
Rorrer, Nicholas A.
,
Allen, Mark D.
in
09 BIOMASS FUELS
,
Aliphatic compounds
,
Amino acids
2018
Poly(ethylene terephthalate) (PET) is one of the most abundantly produced synthetic polymers and is accumulating in the environment at a staggering rate as discarded packaging and textiles. The properties that make PET so useful also endow it with an alarming resistance to biodegradation, likely lasting centuries in the environment. Our collective reliance on PET and other plastics means that this buildup will continue unless solutions are found. Recently, a newly discovered bacterium, Ideonella sakaiensis 201-F6, was shown to exhibit the rare ability to grow on PET as a major carbon and energy source. Central to its PET biodegradation capability is a secreted PETase (PET-digesting enzyme). Here, we present a 0.92 Å resolution X-ray crystal structure of PETase, which reveals features common to both cutinases and lipases. PETase retains the ancestral α/β-hydrolase fold but exhibits a more open active-site cleft than homologous cutinases. By narrowing the binding cleft via mutation of two active-site residues to conserved amino acids in cutinases, we surprisingly observe improved PET degradation, suggesting that PETase is not fully optimized for crystalline PET degradation, despite presumably evolving in a PET-rich environment. Additionally, we show that PETase degrades another semiaromatic polyester, polyethylene-2,5-furandicarboxylate (PEF), which is an emerging, bioderived PET replacement with improved barrier properties. In contrast, PETase does not degrade aliphatic polyesters, suggesting that it is generally an aromatic polyesterase. These findings suggest that additional protein engineering to increase PETase performance is realistic and highlight the need for further developments of structure/activity relationships for biodegradation of synthetic polyesters.
Journal Article