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Sediments are sinks of nutrients in reservoirs, but may also act as temporary nutrient sources to the water column, leading to eutrophication during the warm season. Several abiotic and biotic factors at the water–sediment interface are known to influence the role of sediments as temporary nutrient sources. This study aimed at quantifying the effects of two factors (i.e., oxygenation and bioturbation) on fluxes of nutrients from the water–sediment interface of the reservoir. An experimental approach was developed in the laboratory to test three fauna conditions (no fauna, presence of tubificid worms, and chironomids larvae) and three conditions of water column oxygenation (aerobic, fluctuating, and anaerobic conditions). Chironomid larvae significantly increased concentrations of N (NH4+ + NO3−) and PO43− released from sediments by 3.7-fold and by 17-fold, whereas tubificid worms had a lesser effect (twofold for N and threefold for PO43−). Anaerobic conditions increased N by 56-fold and PO43− by 102-fold compared to the aerobic treatment. Thus, anaerobic conditions produced greater N and P fluxes than fauna. Nevertheless, fauna and anoxic conditions at the water–sediment interface should not be neglected when quantifying the role of sediments on nutrient dynamics in lakes and reservoirs.

Abstract Thiobencarb is a highly effective thiocarbamate herbicide frequently used in rice fields globally. In this study, three bacterial strains (Dechloromonas sp. Th1, Thauera sp. Th2, and Azoarcus sp. Th3) isolated from immobilized biomass were analyzed for thiobencarb degradation under anaerobic conditions, with nitrate serving as an electron acceptor. The experimental results showed that thiobencarb was transformed by Dechloromonas sp. Th1 and Thauera sp. Th2 to produce high concentrations of metabolites in a mineral medium. Dechloromonas sp. Th1 dechlorinated the herbicide to benzyl mercaptan, which was then degraded by Thauera sp. Th2 and Azoarcus sp. Th3. Azoarcus sp. Th3 effectively degraded intermediates, i.e. 4-chlorobenzyl alcohol, 4-chlorobenzoic acid, and benzoic acid, produced from the degradation by Dechloromonas sp. Th1 and Thauera sp. Th2. The cross-feeding, nutrient sharing, and cooperation of all isolates in the degradation process decreased the concentrations of intermediate products. The determination of the degradation kinetics showed that the utilization in the exponential phase of the mixed bacteria was consistent with the Michaelis–Menten model, with a maximum degradation rate of 1.56 ± 0.16 µM day−1. This study showed the degradation mechanisms in bacteria and the synergistic process in the degradation of thiobencarb and its metabolites. To the best of my knowledge, three bacterial isolates, namely, Dechloromonassp. Th1, Thauerasp. Th2, and Azoarcussp. Th3, were the first pure cultures exhibiting degradability toward thiobencarb and its metabolites under anaerobic conditions.

In this study, we investigated the feasibility of electrode-assisted ammonia oxidation and subsequent nitrite accumulation within an anaerobic microbial fuel cell (MFC). Our study focused on determining whether these processes could be effectively maintained in a strictly anaerobic environment, which would be critical for advancing nitrogen removal technologies in wastewater treatment. Although we demonstrated electrode-assisted ammonia oxidation and nitrite accumulation, the expected dominance of these reactions within the system was not achieved. In contrast, ammonia assimilation appeared to be the prevailing nitrogen removal pathway under our experimental conditions. The study did not identify the specific microbial communities responsible for these processes, however, illustrates an important area for future research. Our findings enhance the current understanding of nitrogen cycling in anaerobic MFCs and demonstrate the need for improved strategies to enrich nitrifying bacteria and optimize electrode-assisted nitrogen removal processes in wastewater treatment.

Having up-to-date knowledge on the mineralization of organic materials and release of nutrients is of paramount significance to ensure crops’ nutrient demands, increase nutrient use efficiency and ensure the right fertilizer application at the right time. This study seeks to evaluate the mineralization patterns of various manures viz. cowdung (CD), cowdung slurry (CDSL), trichocompost (TC), vermicompost (VC), poultry manure (PM), poultry manure slurry (PMSL), and mungbean residues (MR). The objective being to establish their efficiency in releasing nutrients under aerobic (field capacity) and anaerobic (waterlogging) conditions. The incubation experiment was designed using a Completely Randomized Design (CRD) that took into account three variables: Manures, soil moisture, and incubation period. The mineralization of carbon (C) and nitrogen (N) ranged from 11.2 to 100.1% higher under aerobic conditions rather than anaerobic ones. The first-order kinetic model was used to mineralize both elements. C mineralization was 45.8 to 498.1% higher in an amount from MR under both moisture conditions. For N release, MR and PM exerted maximum amounts in anaerobic and aerobic scenarios, respectively. However, the rate of C and N mineralization was faster in TC compared to other manures in both moisture conditions. Although TC was 1.4 to 37.7% more efficient in terms of rapidity of mineralization, MR and PM performed better concerning the quantity of nutrient release and soil fertility improvement. PM had 22–24% higher N mineralization potential than PMSL while CDSL had 46–56% higher N mineralization potential than CD. C and N mineralization in soil was greater under aerobic conditions compared to what occurred in the anaerobic context. Depending on mineralization potential, the proper type and amount of manure should be added to soil to increase crops’ nutrient use efficiency, which in turn should lead to better crop production.

Most of the defective/non-infectious enteric phages and viruses that end up in wastewater originate in human feces. Some of the causes of this high level of inactivity at the host stage are unknown. There is a significant gap between how enteric phages are environmentally transmitted and how we might design molecular tools that would only detect infectious ones. Thus, there is a need to explain the low proportion of infectious viral particles once replicated. By analyzing lysis plaque content, we were able to confirm that, under aerobic conditions, Escherichia coli produce low numbers of infectious MS2 phages (I) than the total number of phages indicated by the genome copies (G) with an I/G ratio of around 2%. Anaerobic conditions of replication and ROS inhibition increase the I/G ratio to 8 and 25%, respectively. These data cannot only be explained by variations in the total numbers of MS2 phages produced or in the metabolism of E. coli. We therefore suggest that oxidative damage impacts the molecular replication and assembly of MS2 phages.

Microcystins (MCs), which are produced by harmful cyanobacteria blooms, pose a serious threat to environmental health. However, the effect of MCs on the bacterial community under anaerobic conditions is still unclear. This study examined the dynamic changes of MC-degrading capacity, metabolic activity, and structure of the bacterial community in lake sediment repeatedly treated with 1 mg/L microcystin-LR (MC-LR) under anaerobic conditions. The results showed that the MC-degrading capacity of the bacterial community was increased nearly three-fold with increased treatment frequency. However, the metabolic profile behaved in exactly opposite trend, in which the overall carbon metabolic activity was inhibited by repeated toxin addition. Microbial diversity was suppressed by the first addition of MC-LR and then gradually recovered. The 16S amplicon sequencing showed that the dominant genera were changed from Exiguobacterium and Acinetobacter to Prosthecobacter, Dechloromonas, and Agrobacterium. Furthermore, the increase in the relative abundance of Dechloromonas, Pseudomonas, Hydrogenophaga, and Agrobacterium was positively correlated with the MC-LR treatment times. This indicates that they might be responsible for MC degradation under anaerobic conditions. Our findings reveal the relationship between MC-LR and the sediment bacterial community under anaerobic conditions and indicate that anaerobic biodegradation is an effective and promising method to remediate MCs pollution.

Helicobacter pylori protects itself from stressful environments by forming biofilms, changing its morphology, or invading eukaryotic cells, including yeast cells. There is little knowledge about the environmental factors that influence the endosymbiotic relationship between bacterium and yeasts. Here, we studied if oxygen availability stimulated the growth of H. pylori within Candida and if this was a bacterial- or yeast strain-dependent relationship. Four H. pylori strains and four Candida strains were co-cultured in Brucella broth plus 5% fetal bovine serum, and incubated under microaerobic, anaerobic, or aerobic conditions. Bacteria-like bodies (BLBs) within yeast cells (Y-BLBs) were detected by microscopy. H. pylori was identified by FISH and by PCR amplification of the 16S rRNA gene of H. pylori from total DNA extracted from Y-BLBs from H. pylori and Candida co-cultures. BLBs viability was confirmed by SYTO-9 fluorescence. Higher Y-BLB percentages were obtained under anaerobic conditions and using H. pylori J99 and C. glabrata combinations. Thus, the H. pylori–Candida endosymbiotic relationship is strain dependent. The FISH and PCR results identified BLBs as intracellular H. pylori. Conclusion: Stressful conditions such as an anaerobic environment significantly increased H. pylori growth within yeast cells, where it remained viable, and the bacterium–yeast endosymbiotic relationship was bacterial strain dependent with a preference for C. glabrata.

In addition to the adsorption and immobilization capacities of iron-modified biochars, these materials produce persistent free radicals (PFRs) that can carry out metal [i.e., Cr(VI)] redox transformations, but the primary forms and active species of PFRs involved are not well understood. Here, we investigated the key species of PFRs of α-Fe2O3-modified biochar (MBC) and their influence on Cr(VI) reduction under anaerobic conditions simulating paddy soil environments. MBC produced bulk phenoxyl PFRs that promoted Cr(VI) reduction due to the catalytic effect of the transition metal Fe. In addition, MBC was more efficient in reducing Cr(VI) under anaerobic conditions than under aerobic conditions due to the more active and accessible dissolved PFRs present in the dissolved organic matter (DOM). The electron transfer capacity of DOM was demonstrated by excitation-emission matrix (EEM) spectrophotometry combined with parallel factor analysis, which showed that the protein-like and humic-like components of DOM were involved in Cr(VI) reduction. Furthermore, Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) analysis indicated that reduced-S compounds (O/S < 4) and carboxylic acid (–COO) groups in the unsaturated aliphatic and lignin-like compounds are potentially the main active species accelerating Cr(VI) reduction under anaerobic conditions. Our results provide new insights into the role of dissolved PFRs from iron-modified biochar in promoting Cr(VI) reduction under anaerobic conditions such as flooded soils.Graphical AbstractIron modification promoted a 5.6-fold increase in the concentration of bulk phenoxyl PFRs over unmodified biochar.Dissolved PFRs in iron-biochar derived dissolved organic matter enhanced Cr(VI) reduction under anaerobic conditions.Reduced sulfur compounds and carboxylic acid groups were the major reducing species in the dissolved PFRs.

Soils represent the largest carbon reservoir within terrestrial ecosystems. The mechanisms controlling the amount of carbon stored and its feedback to the climate system, however, remain poorly resolved. Global carbon models assume that carbon cycling in upland soils is entirely driven by aerobic respiration; the impact of anaerobic microsites prevalent even within well-drained soils is missed within this conception. Here, we show that anaerobic microsites are important regulators of soil carbon persistence, shifting microbial metabolism to less efficient anaerobic respiration, and selectively protecting otherwise bioavailable, reduced organic compounds such as lipids and waxes from decomposition. Further, shifting from anaerobic to aerobic conditions leads to a 10-fold increase in volume-specific mineralization rate, illustrating the sensitivity of anaerobically protected carbon to disturbance. The vulnerability of anaerobically protected carbon to future climate or land use change thus constitutes a yet unrecognized soil carbon–climate feedback that should be incorporated into terrestrial ecosystem models. Mechanisms controlling soil carbon storage and feedbacks to the climate system remain poorly constrained. Here, the authors show that anaerobic microsites stabilize soil carbon by shifting microbial metabolism to less efficient anaerobic respiration and protecting reduced organic compounds from decomposition.

The gut microbiota affects human health, but we are only just beginning to develop a mechanistic understanding of some of the host-microbe interactions involved. Litvak et al. review how host colon epithelial cells mediate the symbiosis. Healthy colonocytes maintain anaerobic conditions in the gut lumen because their metabolism ensures rapid oxygen consumption. Such conditions select for obligate anaerobic organisms. These tend to be those that consume dietary fiber and produce short-chain fatty acids beneficial to the host. If there is a shift in colonocyte metabolism—because of disease, diet, or other damage—the epithelium becomes oxygenated. The presence of oxygen allows expansion of facultative aerobic organisms. Microbes in genera that include pathogens are often oxygen-tolerant, and dysbiosis can be the result. Science , this issue p. eaat9076 An imbalance in the colonic microbiota might underlie many human diseases, but the mechanisms that maintain homeostasis remain elusive. Recent insights suggest that colonocyte metabolism functions as a control switch, mediating a shift between homeostatic and dysbiotic communities. During homeostasis, colonocyte metabolism is directed toward oxidative phosphorylation, resulting in high epithelial oxygen consumption. The consequent epithelial hypoxia helps to maintain a microbial community dominated by obligate anaerobic bacteria, which provide benefit by converting fiber into fermentation products absorbed by the host. Conditions that alter the metabolism of the colonic epithelium increase epithelial oxygenation, thereby driving an expansion of facultative anaerobic bacteria, a hallmark of dysbiosis in the colon. Enteric pathogens subvert colonocyte metabolism to escape niche protection conferred by the gut microbiota. The reverse strategy, a metabolic reprogramming to restore colonocyte hypoxia, represents a promising new therapeutic approach for rebalancing the colonic microbiota in a broad spectrum of human diseases.