Explore the vast range of titles available.

We explored the power of 14 socioeconomic factors for predicting differences in traditional knowledge about palms (Arecaceae) at the personal, household, and regional levels in 25 locations in the Amazon, Andes, and Choco of northwestern South America. Using semistructured interviews, we gathered data on palm uses from 2050 informants in 53 communities and four countries (Colombia, Ecuador, Peru, and Bolivia ). We performed multilevel statistical analyses, which showed that the influence of each socioeconomic factor differed depending on whether the analysis was performed on the overall palm knowledge or on individual use categories. At the general palm knowledge level, gender was the only factor that had a significant association in all five subregions, and showed that men had more knowledge than women, and age had a positive significant association only in the lowlands. Most of the analyzed socioeconomic factors had a greater influence on the lowland ecoregions of the Amazon and Choco, although there were mixed trends in these ecoregions. Our results show that there are no regional patterns in the predictive power of socioeconomic factors and that their influence on palm-use knowledge is highly localized. We can conclude that (1) conservation strategies of traditional knowledge of palm use in the region should be developed mainly at the local level, and (2) large-scale comparable ethnoecological studies are necessary to understand indigenous communities' livelihoods at different scales.

Despite long-standing interest in the origin and maintenance of species diversity, little is known about historical drivers of species assemblage structure at large spatiotemporal scales. Here, we use global species distribution data, a dated genus-level phytogeny, and paleo-reconstructions of biomes and climate to examine Cenozoic imprints on the phylogenetic structure of regional species assemblages of palms (Arecaceae), a species-rich plant family characteristic of tropical ecosystems. We find a strong imprint on phylogenetic clustering due to geographic isolation and in situ diversification, especially in the Neotropics and on islands with spectacular palm radiations (e. g., Madagascar, Hawaii, and Cuba). Phylogenetic overdispersion on mainlands and islands corresponds to biotic interchange areas. Differences in the degree of phylogenetic clustering among biogeographic realms are related to differential losses of tropical rainforests during the Cenozoic, but not to the cumulative area of tropical rainforest over geological time. A largely random phylogenetic assemblage structure in Africa coincides with severe losses of rainforest area, especially after the Miocene. More recent events also appear to be influential: phylogenetic clustering increases with increasing intensity of Quaternary glacial-interglacial climatic oscillations in South America and, to a lesser extent, Africa, indicating that specific clades perform better in climatically unstable regions. Our results suggest that continental isolation (in combination with limited long-distance dispersal) and changing climate and habitat loss throughout the Cenozoic have had strong impacts on the phylogenetic structure of regional species assemblages in the tropics.

The ornamental palms represent a diverse species in the national botanical gardens, and roadsides; however, the accurate identification of the palm trees (Arecaceae) is a problematic due to the numerous overlapped morphological traits, especially with the environmental conditions. So, the objective of this study was to implement the different morphological traits, especially based on the pyrene morphology, with the molecular barcoding markers of the plastid rbcL on delineation and revising the taxonomical identification of the most common Palm trees in Egypt in addition to their pharmacological and Ethnobotanical applications. An obvious variation on the surface of pyrenes among the studied Palm taxa ranged from ovoid to globose or discoid, with brown to pale brown, was recorded. The pyrene's fruit dimensions were ranged with S. yaba Becc. (5.65 × 6.85 mm), Washingtonia robusta (7.19 × 4.4 mm) and Sabal palmetto (Walter) Lodd. ex Schult. & Schult.f. (7.24 × 9.58 mm), while Syagrus romanzoffiana (Cham.) Glassman is (19.8 × 12.15 mm). The color of the pyrene of W. robusta , S. romanzoffiana , and Livistona decora (W.Bull) Dowe was brown, while was dark brown in Butia capitata (Mart.) Becc . Sabal yapa and S. palmetto. The SEM analysis of the pyrene surface microsculpture, the studied taxa of S. palmetto, S. yaba, Livistona, Brahea, and Sabal could be easily delimited at the generic level. The taxonomical identification of plant taxa based on their morphological characteristics, such as color, surface smoothness, and geometric shapes, was confirmed based on their molecular barcoding. The Principal Component Analysis (PCA) scatter plot based on the morphological traits distinguishes the taxa of tribe Cocoeae, subfamily Arecoideae and taxa of tribe Corypheae, subfamily Coryphoideae. From the UPGMA dendrogram based on the micromorphological characteristics, the studied taxa were grouped into two major clusters (I, II), the cluster I includes S. palmatto, S, yaba and W. robusta which belongs to subtribe Sabalinae, tribe corypheae, while cluster II includes L. decora, L. chinensis, (Jacq.) R.Br. ex Mart.and B. armata which belongs to subtribe Livistoninae and tribe Corypheae. Thus, the classification of the experimental plants based on the morphological traits of pyrene fruit microsculpturing was closely matched with the molecular barcoding based on the rbcL sequences.

BACKGROUND: With more than 90 published studies of pollination mechanisms, the palm family is one of the better studied tropical families of angiosperms. Understanding palm–pollinator interactions has implications for tropical silviculture, agroforestry and horticulture, as well as for our understanding of palm evolution and diversification. We review the rich literature on pollination mechanisms in palms that has appeared since the last review of palm pollination studies was published 25 years ago. SCOPE AND CONCLUSIONS: Visitors to palm inflorescences are attracted by rewards such as food, shelter and oviposition sites. The interaction between the palm and its visiting fauna represents a trade-off between the services provided by the potential pollinators and the antagonistic activities of other insect visitors. Evidence suggests that beetles constitute the most important group of pollinators in palms, followed by bees and flies. Occasional pollinators include mammals (e.g. bats and marsupials) and even crabs. Comparative studies of palm–pollinator interactions in closely related palm species document transitions in floral morphology, phenology and anatomy correlated with shifts in pollination vectors. Synecological studies show that asynchronous flowering and partitioning of pollinator guilds may be important regulators of gene flow between closely related sympatric taxa and potential drivers of speciation processes. Studies of larger plant–pollinator networks point out the importance of competition for pollinators between palms and other flowering plants and document how the insect communities in tropical forest canopies probably influence the reproductive success of palms. However, published studies have a strong geographical bias towards the South American region and a taxonomic bias towards the tribe Cocoseae. Future studies should try to correct this imbalance to provide a more representative picture of pollination mechanisms and their evolutionary implications across the entire family.

We report the first whole genome sequence (WGS) assembly and annotation of a dwarf coconut variety, ‘Catigan Green Dwarf’ (CATD). The genome sequence was generated using the PacBio SMRT sequencing platform at 15X coverage of the expected genome size of 2.15 Gbp, which was corrected with assembled 50X Illumina paired-end MiSeq reads of the same genome. The draft genome was improved through Chicago sequencing to generate a scaffold assembly that results in a total genome size of 2.1 Gbp consisting of 7,998 scaffolds with N50 of 570,487 bp. The final assembly covers around 97.6% of the estimated genome size of coconut ‘CATD’ based on homozygous k-mer peak analysis. A total of 34,958 high-confidence gene models were predicted and functionally associated to various economically important traits, such as pest/disease resistance, drought tolerance, coconut oil biosynthesis, and putative transcription factors. The assembled genome was used to infer the evolutionary relationship within the palm family based on genomic variations and synteny of coding gene sequences. Data show that at least three (3) rounds of whole genome duplication occurred and are commonly shared by these members of the Arecaceae family. A total of 7,139 unique SSR markers were designed to be used as a resource in marker-based breeding. In addition, we discovered 58,503 variants in coconut by aligning the Hainan Tall (HAT) WGS reads to the non-repetitive regions of the assembled CATD genome. The gene markers and genome-wide SSR markers established here will facilitate the development of varieties with resilience to climate change, resistance to pests and diseases, and improved oil yield and quality.

A main objective of ethnobotany is to document traditional knowledge about plants before it disappears. However, little is known about the coverage of past ethnobotanical studies and thus about how well the existing literature covers the overall traditional knowledge of different human groups. To bridge this gap, we investigated ethnobotanical data-collecting efforts across four countries (Colombia, Ecuador, Peru, Bolivia), three ecoregions (Amazon, Andes, Choco), and several human groups (including Amerindians, mestizos, and Afro-Americans). We used palms (Arecaceae) as our model group because of their usefulness and pervasiveness in the ethnobotanical literature. We carried out a large number of field interviews (n = 2201) to determine the coverage and quality of palm ethnobotanical data in the existing ethnobotanical literature (n = 255) published over the past 60 years. In our fieldwork in 68 communities, we collected 87,886 use reports and documented 2262 different palm uses and 140 useful palm species. We demonstrate that traditional knowledge on palm uses is vastly under-documented across ecoregions, countries, and human groups. We suggest that the use of standardized data-collecting protocols in wide-ranging ethnobotanical fieldwork is a promising approach for filling critical information gaps. Our work contributes to the Aichi Biodiversity Targets and emphasizes the need for signatory nations to the Convention on Biological Diversity to respond to these information gaps. Given our findings, we hope to stimulate the formulation of clear plans to systematically document ethnobotanical knowledge in northwestern South America and elsewhere before it vanishes.

Fruit provide essential nutrients and vitamins for the human diet. Not only is the lipid-rich fleshy mesocarp tissue of the oil palm (Elaeis guineensis) fruit the main source of edible oil for the world, but it is also the richest dietary source of provitamin A. This study examines the transcriptional basis of these two outstanding metabolic characters in the oil palm mesocarp. Morphological, cellular, biochemical, and hormonal features defined key phases of mesocarp development. A 454 pyrosequencing-derived transcriptome was then assembled for the developmental phases preceding and during maturation and ripening, when high rates of lipid and carotenoid biosynthesis occur. A total of 2,629 contigs with differential representation revealed coordination of metabolic and regulatory components. Further analysis focused on the fatty acid and triacylglycerol assembly pathways and during carotenogenesis. Notably, a contig similar to the Arabidopsis (Arabidopsis thaliana) seed oil transcription factor WRINKLED1 was identified with a transcript profile coordinated with those of several fatty acid biosynthetic genes and the high rates of lipid accumulation, suggesting some common regulatory features between seeds and fruits. We also focused on transcriptional regulatory networks of the fruit, in particular those related to ethylene transcriptional and GLOBOSA/PISTILLATA-like proteins in the mesocarp and a central role for ethylene-coordinated transcriptional regulation of type VII ethylene response factors during ripening. Our results suggest that divergence has occurred in the regulatory components in this monocot fruit compared with those identified in the dicot tomato (Solarium lycopersicum) fleshy fruit model.

Industrial agricultural plantations are a rapidly increasing yet largely unmeasured source of tropical land cover change. Here, we evaluate impacts of oil palm plantation development on land cover, carbon flux, and agrarian community lands in West Kalimantan, Indonesian Borneo. With a spatially explicit land change/carbon bookkeeping model, parameterized using high-resolution satellite time series and informed by socioeconomic surveys, we assess previous and project future plantation expansion under five scenarios. Although fire was the primary proximate cause of 1989–2008 deforestation (93%) and net carbon emissions (69%), by 2007–2008, oil palm directly caused 27% of total and 40% of peatland deforestation. Plantation land sources exhibited distinctive temporal dynamics, comprising 81% forests on mineral soils (1994–2001), shifting to 69% peatlands (2008–2011). Plantation leases reveal vast development potential. In 2008, leases spanned ∼65% of the region, including 62% on peatlands and 59% of community-managed lands, yet <10% of lease area was planted. Projecting business as usual (BAU), by 2020 ∼40% of regional and 35% of community lands are cleared for oil palm, generating 26% of net carbon emissions. Intact forest cover declines to 4%, and the proportion of emissions sourced from peatlands increases 38%. Prohibiting intact and logged forest and peatland conversion to oil palm reduces emissions only 4% below BAU, because of continued uncontrolled fire. Protecting logged forests achieves greater carbon emissions reductions (21%) than protecting intact forests alone (9%) and is critical for mitigating carbon emissions. Extensive allocated leases constrain land management options, requiring trade-offs among oil palm production, carbon emissions mitigation, and maintaining community landholdings.

Enhancement of light harvesting in annual crops has successfully led to yield increases since the green revolution. Such an improvement has mainly been achieved by selecting plants with optimal canopy architecture for specific agronomic practices. For perennials such as oil palm, breeding programmes were focused more on fruit yield, but now aim at exploring more complex traits. The aim of the present study is to investigate potential improvements in light interception and carbon assimilation in the study case of oil palm, by manipulating leaf traits and proposing architectural ideotypes. Sensitivity analyses (Morris method and metamodel) were performed on a functional-structural plant model recently developed for oil palm which takes into account genetic variability, in order to virtually assess the impact of plant architecture on light interception efficiency and potential carbon acquisition. The most sensitive parameters found over plant development were those related to leaf area (rachis length, number of leaflets, leaflet morphology), although fine attributes related to leaf geometry showed increasing influence when the canopy became closed. In adult stands, optimized carbon assimilation was estimated on plants with a leaf area index between 3.2 and 5.5 m2 m-2 (corresponding to usual agronomic conditions), with erect leaves, short rachis and petiole, and high number of leaflets on the rachis. Four architectural ideotypes for carbon assimilation are proposed based on specific combinations of organ dimensions and arrangement that limit mutual shading and optimize light distribution within the plant crown. A rapid set-up of leaf area is critical at young age to optimize light interception and subsequently carbon acquisition. At the adult stage, optimization of carbon assimilation could be achieved through specific combinations of architectural traits. The proposition of multiple morphotypes with comparable level of carbon assimilation opens the way to further investigate ideotypes carrying an optimal trade-off between carbon assimilation, plant transpiration and biomass partitioning.

The propagation of oil palm through somatic embryogenesis is the most effective method of cloning this palm tree; however, in vitro cultivation can lead to abnormalities in plant tissue, such as hyperhydricity. The present study aimed to evaluate the difference in anatomical, morphological, and histochemical characteristics, and gene expression in normal (Nm) and hyperhydric (Hh) somatic embryos of oil palm. For this purpose, Nm and Hh somatic embryos were collected from the differentiation medium and were submitted to anatomical and histochemical analyses to assess the nucleus/cytoplasm ratio (toluidine blue), starch (Lugol), and proteins (XP), as well as ultrastructural analyses via transmission electron microscopy. Additionally, gene expression analyses were performed to gain a better understanding on the molecular aspect of hyperhydric abnormality. A higher quantity of differentiated Nm somatic embryos per explant was observed, with a germination rate close to zero in Hh somatic embryos. Additionally, a higher accumulation of proteins and starch was found in Nm somatic embryos when compared to Hh embryos. It was also noted that in Nm somatic embryos, protein reserves were primarily located in the proximal region (embryonic axis), whereas starch reserves were mainly accumulated in the distal region of the somatic embryos. Hh somatic embryos exhibit insignificant starch reserves, and a greater number of intercellular spaces were observed compared to Nm somatic embryos. However, some Hh somatic embryos displayed histochemical characteristics similar to Nm, which could explain the occurrence of reversions from the Hh state to the Nm state observed in this study. Regarding molecular analyses, the gene expression results obtained showed that out of the 19 genes analyzed, 17 were upregulated in hyperhydric embryos when compared to the control condition (normal somatic embryos). Genes involved in stress response, energy metabolism, defense, membrane transport, hormonal regulation, and development were positively regulated, especially those involved in ethylene synthesis and energetic metabolism. To the best of our knowledge, this is the first in-depth study addressing hyperhydricity in oil palm during somatic embryogenesis.