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Although low pathogenicity avian influenza viruses (LPAIV) are detected in shorebirds at Delaware Bay annually, little is known about affected species habitat preferences or the movement patterns that might influence virus transmission and spread. During the 5-wk spring migration stopover period during 2007–2008, we conducted a radiotelemetry study of often-infected ruddy turnstones (Arenaria interpres morinella; n = 60) and rarely infected sanderlings (Calidris alba; n = 20) to identify locations and habitats important to these species (during daytime and nighttime), determine the extent of overlap with other AIV reservoir species or poultry production areas, reveal possible movements of AIV around the Bay, and assess whether long-distance movement of AIV is likely after shorebird departure. Ruddy turnstones and sanderlings both fed on Bay beaches during the daytime. However, sanderlings used remote sandy points and islands during the nighttime while ruddy turnstones primarily used salt marsh harboring waterfowl and gull breeding colonies, suggesting that this environment supports AIV circulation. Shorebird locations were farther from agricultural land and poultry operations than were random locations, suggesting selection away from poultry. Further, there was no areal overlap between shorebird home ranges and poultry production areas. Only 37% (22/60) of ruddy turnstones crossed into Delaware from capture sites in New Jersey, suggesting partial site fidelity and AIV gene pool separation between the states. Ruddy turnstones departed en masse around June 1 when AIV prevalence was low or declining, suggesting that a limited number of birds could disperse AIV onto the breeding grounds. This study provides needed insight into AIV and migratory host ecology, and results can inform both domestic animal AIV prevention and shorebird conservation efforts.

The population of ruddy turnstones (Arenaria interpres morinella) that migrates through Delaware Bay has undergone severe declines in recent years, attributable to reduced availability of horseshoe crab (Limulus polyphemus) eggs at this critical spring migration stopover site. Concurrently, this population has experienced annual low pathogenicity avian influenza virus (AIV) epidemics at this same site. Using a prospective cohort study design with birds individually flagged during May–June 2006–2008, we evaluated resighting rates (a proxy for annual survival) between AIV-infected and uninfected birds at 1 yr after capture, testing, and measurement. Overall resighting rate was 46%, which varied by year and increased with relative mass of the bird when captured. Resighting rates were not different between AIV-infected and uninfected birds in any period. In multivariate analyses, infection status was also unrelated to resighting rate after controlling for year, day, state, sex, body size, mass index, or whether the bird was blood-sampled. Thus, apparent annual survival in ruddy turnstones was not reduced by AIV infection at this migratory stopover. However, it is unknown whether intestinal AIV infection might cause subtle reductions in weight gain which could negatively influence reproduction.

MicroRNAs (miRNAs) are highly conserved small noncoding RNAs that regulate gene expression post‐transcriptionally. Circulating miRNAs – miRNAs that have been released from cells and circulate in the bloodstream – are relatively stable and interesting molecules for wildlife research, where they may form a proxy for gene expression as a function of the animal's state under a variety of environmental challenges. Aiming at providing initial baseline data on the circulating miRNAome in avian wildlife, we assessed the miRNA profiles of wild ruddy turnstones Arenaria interpres on their Australian non‐breeding grounds. The ruddy turnstone is a long‐distant migrant and a significant reservoir species for low pathogenic avian influenza virus (LPAIV). We therefore investigated both LPAIV‐infected and uninfected individuals for their specific miRNA profiles to potentially elucidate the species' molecular mechanisms underlying its response to LPAIV infection. De novo miRNA characterisation in the ruddy turnstone genome identified 161 conserved and two novel, bird‐specific miRNAs, with liver‐enriched miRNA‐122 being the most abundant. Z chromosome‐linked miR‐2954‐3p was significantly more abundant in serum from males (ZZ) than from females (ZW). Furthermore, we found a sex‐ and age‐associated effect of LPAIV infection on miRNA abundance in serum samples, including one novel miRNA. This circulating miRNA signature may reflect sex‐ and age‐specific differences in the host response, indicating that circulating miRNAs could serve as a valuable non‐destructive analytical tool for enhancing our understanding of avian infections in a wildlife context and should be explored further.

Many shorebird populations are declining, and contaminants may be partly contributing to the decline by interfering with feeding, migration, and breeding success. The goal of our study was to determine whether there was a temporal change in concentrations of trace elements of red knot ( Calidris canutus rufa ), sanderling ( Calidris alba ), and ruddy turnstone ( Arenaria interpres ) during spring migration in Delaware Bay, New Jersey, USA. We sampled blood to 1) determine levels of trace elements in 2019, 2) compare 2019 trace element levels with those from shorebirds in 2011–2012, and 3) examine variability in blood levels of trace elements among species. In 2019: 1) trace element levels were significantly different among species (except cadmium[Cd]), 2) Cd was lowest in all species, and arsenic (As) and selenium (Se) were highest, and 3) sanderlings had the highest levels of As and Se, and knots had the highest levels of chromium (Cr) and lead (Pb). Se was higher in these shorebirds than reported for other shorebirds from elsewhere. As, mercury (Hg), and Se increased significantly between 2011–2012 and 2019 in all three species. There were no significant temporal changes in Cd. Chromium (Cr) decreased in knots and sanderling. The temporal increases in As, Se, and Hg bear watching as they are toxic in vertebrates, and each can decrease the toxicity of the others. The data indicate that shorebirds can be bioindicators of changing trace element levels in estuaries, potentially providing early warning of increasing levels of As, Hg, and Se in the environment.

Avian influenza (AI) is a zoonotic disease significant to both public and animal health, caused by influenza virus A, and affects domestic poultry, wild birds, and mammals including humans. Aquatic birds are considered the natural reservoir of this virus. In 2016, Morocco experienced the first occurrence of low pathogenic H9N2 avian influenza virus (AIV) in poultry; however, no cases were reported in wild birds. The present study aimed to monitor the presence of AIV in wild birds in Morocco in order to trace the possible sources of the viruses affecting poultry. Between 2016 and 2019, 967 samples obtained from 480 birds representing 56 different wild bird species, 20 families, and 8 orders, mostly from Charadriiformes, Anseriformes, Pelecaniformes, and Passeriformes, were collected from various wetlands and relevant ornithologic sites in Morocco. These field samples consisted of 374 cloacal swabs, 321 tracheal swabs, 54 fecal samples, and 218 organ pools including the trachea, lung, liver, spleen, heart, intestine, and brain. The samples were examined for the presence of AIV using TaqMan-based real-time reverse transcriptase-PCR (rRT-PCR) targeting the matrix gene, followed by further subtyping rRT-PCR tests targeting the H1–H16 genes. The AI matrix gene was detected in 18 out of 967 samples (1.86%); positive samples were detected in 17 birds belonging to 10 bird species: two redshanks (Tringa totanus), one little stint (Calidris minuta), one ruddy turnstone (Arenaria interpres), one common snipe (Gallinago gallinago), one common greenshank (Tringa nebularia), one black-winged stilt (Himantopus himantopus), two black-headed gulls (Chroicocephalus ridibundus), one slender-billed gull (Chroicocephalus genei), six cattle egrets (Bubulcus ibis), and one Eurasian coot (Fulica atra). AIV was detected in 2 wetlands and 1 ornithologic site (Sidi Moussa Oualidia Complex, Smir lagoon and El Jadida Coast) and the highest positivity was revealed in fresh fecal samples (11.1%), indicating the suitability of this matrix for wild bird surveillance. Our results highlight that waders, gulls, and cattle egrets are the most affected species and may represent a potential risk for AI introduction in the poultry sector in Morocco. Regular monitoring of wild birds in Morocco, focusing in particular in the areas and species identified in this study as a high risk of virus circulation, should be implemented to anticipate and prevent possible AIV spread.

This study was carried out in the Kızılırmak Delta Cernek Bird Ringing Station, Central Black Sea Region, during August and September 2020, to survey the louse species found on shorebirds (Aves: Charadriiformes). A total of 241 birds belonging to 13 species were searched for chewing lice. Eleven species in six genera of the family Scolopacidae ( Actitis hypoleucos, Arenaria interpres, Calidris alba, Calidris alpina, Calidris falcinellus, Calidris ferruginea, Calidris minuta, Gallinago gallinago, Tringa glareola, Tringa totanus, Xenus cinereus ) and two species in one genus of the family Charadriidae ( Charadrius dubius, Charadrius hiaticula ) were examined. Birds were caught alive with mist-nets, ringed, searched for lice, and released. A total of 153 birds (63.49%) were infested with lice belonging to 16 species, five amblycerans: Actornithophilus bicolor, Actornithophilus ochraceus, Actornithophilus totani, Actornithophilus umbrinus, Austromenopon lutescens , and eleven ischnocerans: Carduiceps fulvofasciatus, Carduiceps meinertzhageni, Carduiceps zonarius, Lunaceps actophilus, Lunaceps falcinellus, Lunaceps schismatus, Quadraceps hiaticulae, Quadraceps obscurus, Quadraceps ravus, Quadraceps strepsilaris and Saemundssonia platygaster frater . These eight species are new records for Turkey: Ac. bicolor, Ac. ochraceus, Ca. fulvofasciatus, Lu. falcinellus, Lu. schismatus, Qu. ravus, Qu. strepsilaris and Sa. platygaster frater . In addition, Qudraceps hiaticulae was recorded from Little ringed plovers ( Charadrius dubius ) for the first time in the world in this study. According the lice checklist of wild birds in Turkey, a total of 188 bird species examined and 122 of them were infested, and a total of 217 chewing lice species has been recorded.

Invasive ecosystem engineers both positively and negatively affect their recipient ecosystems by generating novel habitats. Many studies have focused on alterations to ecosystem properties and to native species diversity and abundance caused by invasive engineers. However, relatively few studies have documented the extent to which behaviors of native species are affected. The red seaweed Gracilaria vermiculophylla (Rhodophyta) invaded estuaries of the southeastern United States within the last few decades and now provides abundant aboveground vegetative cover on intertidal mudflats that were historically devoid of seaweeds. We hypothesized that G. vermiculophylla would affect the foraging behavior of native shorebirds positively for birds that target seaweed-associated invertebrates or negatively for birds that target prey on or within the sediment now covered with seaweed. Visual surveys of mudflats >1 ha in size revealed that more shorebirds occurred on mudflats with G. vermiculophylla relative to mudflats without G. vermiculophylla. This increased density was consistent across 7 of 8 species, with the one exception being the semipalmated plover Charadrius semipalmatus. A regression-based analysis indicated that while algal presence predicted shorebird density, densities of some bird species depended on sediment composition and infaunal invertebrate densities. At smaller spatial scales (200 m² and <1 m²), experimental removals and additions of G. vermiculophylla and focal observations showed strong variation in behavioral response to G. vermiculophylla among bird species. Birds preferentially foraged in bare mud (e.g., C. semipalmatus), in G. vermiculophylla (e.g., Arenaria interpres), or displayed no preference for either habitat (e.g., Tringa semipalmata). Thus, while the presence of the invasive ecosystem engineer on a mudflat appeared to attract greater numbers of these predators, shorebird species differed in their behavioral responses at the smaller spatial scales that affect their foraging. Our research illuminates the need to account for species identity, individual behavior, and scale when predicting the impacts of invasive species on native communities.

Since 1985, avian influenza virus surveillance has been conducted annually from mid-May to early June in charadriiform species from the families Scolopacidae and Laridae (shorebirds and gulls) at Delaware Bay in the northeast United States. The mass migrations of shorebirds, gulls and horseshoe crabs (Limulus polyphemus) coincide at that time, and large numbers of migrating birds pause at Delaware Bay to feed on horseshoe crab eggs deposited at the high-tide line. Influenza viruses are consistently isolated from charadriiform birds at Delaware Bay, at an overall rate approximately 17 times the combined rate of isolation at all other surveillance sites worldwide (490 isolates/9474 samples, 5.2% versus 49 isolates per 15 848 samples, 0.3%, respectively; Proportion test, p < 0.0001). The likelihood of isolating influenza viruses at Delaware Bay is dependent on the presence of ruddy turnstone (Arenaria interpres) at the sampling site (G-test of independence, p < 0.001). The convergence of host factors and environmental factors results in a unique ecological ‘hot spot’ for influenza viruses in Charadriiformes.

Correlations between transequatorial migratory bird routes and bipolar biogeographic disjunctions in bryophytes suggest that disjunctions between northern and southern high latitude regions may result from bird-mediated dispersal; supporting evidence is, however, exclusively circumstantial. Birds disperse plant units (diaspores) internally via ingestion (endozoochory) or externally by the attachment of diaspores to the body (ectozoochory). Endozoochory is known to be the primary means of bird-mediated dispersal for seeds and invertebrates at local, regional, and continental scales. Data supporting the role of bird-mediated endozoochory or ectozoochory in the long distance dispersal of bryophytes remain sparse, however, despite the large number of bryophytes displaying bipolar disjunctions. To determine if transequatorial migrant shorebirds may play a role in the ectozoochory of bryophyte diaspores, we developed a method for screening feathers of wild birds. We provide the first evidence of microscopic bryophyte diaspores, as well as those from non-bryophyte lineages, embedded in the plumage of long distance transequatorial migrant birds captured in their arctic breeding grounds. The number of diaspores recovered suggests that entire migratory populations may be departing their northern breeding grounds laden with potentially viable plant parts and that they could thereby play significant roles in bipolar range expansions of lineages previously ignored in the migrant bird dispersal literature.

Migratory aquatic birds play an important role in the maintenance and spread of avian influenza viruses (AIV). Many species of aquatic migratory birds tend to use similar migration routes, also known as flyways, which serve as important circuits for the dissemination of AIV. In recent years there has been extensive surveillance of the virus in aquatic birds in the Northern Hemisphere; however in contrast only a few studies have been attempted to detect AIV in wild birds in South America. There are major flyways connecting South America to Central and North America, whereas avian migration routes between South America and the remaining continents are uncommon. As a result, it has been hypothesized that South American AIV strains would be most closely related to the strains from North America than to those from other regions in the world. We characterized the full genome of three AIV subtype H11N9 isolates obtained from ruddy turnstones (Arenaria interpres) on the Amazon coast of Brazil. For all gene segments, all three strains consistently clustered together within evolutionary lineages of AIV that had been previously described from aquatic birds in North America. In particular, the H11N9 isolates were remarkably closely related to AIV strains from shorebirds sampled at the Delaware Bay region, on the Northeastern coast of the USA, more than 5000 km away from where the isolates were retrieved. Additionally, there was also evidence of genetic similarity to AIV strains from ducks and teals from interior USA and Canada. These findings corroborate that migratory flyways of aquatic birds play an important role in determining the genetic structure of AIV in the Western hemisphere, with a strong epidemiological connectivity between North and South America.