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Mobile genetic elements (MGEs) are the DNA sequences capable of moving inside the host genome. As a result of ongoing mutation processes and low natural selection pressure, the evolutionary diversity of MGEs is constantly increasing. Eukaryotic DNA transposons represent a very large and diverse group of MGEs. This work was focused on the study of the pogo DNA transposons in three genomes of jellyfish in the genus Aurelia : Aurelia aurita , Aurelia coerulea , and Aurelia aurita complex sp. In this work, the local alignment method (BLASTn) was used to search for the pogo group MGEs. Multiple amino-acid sequence alignment was performed using MAFFT. It was demonstrated that the majority of pogo elements were represented by the Fot/Fot-like family elements. Two new subfamilies, auFLE1 and auFLE2 , were identified in this group. The Jelly group including two elements was also detected in jellyfish. No potentially functional DNA transposons were found among the detected pogo elements. Analysis of the identified pogo elements showed that no active DNA transposons were preserved in the studied jellyfish genomes: all elements are damaged by mutations or have deletions and are not represented by full-size copies. This allowed us to suggest that the activity peak for these transposons took place relatively long ago.

Climate change is linked to changes in the distribution and phenology of plankton through several trophic levels, with potential impacts on pelagic food webs. Global warming and other anthropogenic stresses have also been implicated in proposed large-scale increases in jellyfish numbers. We have analyzed a 1992 to 2011 time series on occurrence of common scyphozoan jellyfish at a Skagerrak location for changes in their abundance and phenology, and attempted to relate these observations to environmental and climatic variables including temperature, salinity, chl a concentration, zooplankton prey biomass and the North Atlantic Oscillation index using generalized linear models (GLMs). Cyanea spp. abundances showed no significant trend during the study period. Their fluctuations were positively related to temperature and prey availability, with possible impacts on the polyp generation. The central tendency of annual Cyanea spp. abundance showed a borderline significant shift towards a later date, while zooplankton biomass showed the opposite trend, suggesting potential change in trophic match. Aurelia aurita abundance exhibited a considerable decline and 5-yr cyclicity, but neither pattern was explained by any of the investigated explanatory variables. Unidentified factors causing cyclicity may include predatory interactions or density-dependent processes, possibly involving the benthic stages. Observed changes in abundance may also be related to a possible regime shift in the Norwegian Skagerrak area around the turn of the millennia. Our results highlight the importance of considering changes in jellyfish abundances with regard to locality and species. Improved understanding of polyp ecology seems necessary for understanding fluctuations in jellyfish numbers.

Clearance rates of the hydromedusaeSarsia tubulosa, Rathkea octopunctataandBougainvillea superciliarisand the scyphomedusaAurelia auritawere measured in the laboratory. Gut contents analyses ofA. auritawere also collectedin situand subsequently used for estimation of clearance rate. The clearance rate ofA. auritavaried widely with prey organisms. Large crustacean prey with low escape capabilities (Artemia salinanauplii and cirripede larvae) were cleared at high rates, whereas copepodites were cleared at lower rates, and clearance rates of small bivalve larvae and copepod nauplii were comparatively low. These data were used to assess the impact of jellyfish predation upon zooplankton and fish larvae in Limfjorden, Denmark. Repeated sampling of zooplankton, fish larvae and medusae was undertaken during the first half of 2003. Nine taxa of hydromedusae and 4 taxa of scyphomedusae were identified. Abundance estimates were combined with estimated clearance rates of individual medusae to calculate potential jellyfish-induced mortality on prey in Limfjorden. Copepoda was used as a model prey group to estimate the collective predation impact by all medusae. Medusa species with unknown clearance potential were given assumed clearance rate values, but the collective predation potential by these species was evaluated to be small. Hydromedusae dominated numerically and had their highest potential clearance impact in spring, but overall jellyfish clearance potential on copepods was low during this period. From MayA. auritawas the most abundant jellyfish and the potential jellyfish predation impact became totally dominated by this scyphomedusa. Clearance potential was locally high on some prey, and predation byA. auritaprobably controlled the abundance of cirripede larvae and fish larvae in Limfjorden. For these prey groups, half-life expectancy was less than 1 d at several locations.

The increasing amounts of artificial marine substrates, in many parts of the world have been proposed as a potential driver of Aurelia spp. blooms, on account of providing extra habitats for the settlement and the proliferation of the benthic stage (polyps). Previous experiments have mainly focused on the substrate choices of Aurelia spp. planulae. However, substrate preferences for the proliferation and immigration of polyps have not been reported. We monitored the propagation and immigration of Aurelia aurita (s. l.) polyps on two natural and nine artificial substrates at constant temperature (20±0.5°C) and salinity (30±0.5) in beakers and a glass aquarium in the laboratory, respectively. The results showed that, among artificial substrates, the highest number for polyp proliferation and immigration was found on nets, rigid polyvinyl chloride plates (RPVC), and wood. The lowest density of polyps was present on iron plates. Among natural substrates, the asexual reproduction rate of polyps on Patinopecten yessoensis (Jay, 1857) shells was significantly higher than Azumapecten farreri (Jones & Preston, 1904). On the account of the distinction in the roughness, chemical properties and biofilms of these material surfaces, bare artificial or natural substrates discriminatively affect the proliferation and the immigration of Aurelia spp. polyps at laboratory. These observations suggest that, even in the natural environment, different materials and texture may influence the composition and the abundance of the fouling communities and the assemblages of polyps and, indirectly, have effects on the amounts of released medusae.

What happens when an animal is injured and loses important structures? Some animals simply heal the wound, whereas others are able to regenerate lost parts. In this study, we report a previously unidentified strategy of self-repair, where moon jellyfish respond to injuries by reorganizing existing parts, and rebuilding essential body symmetry, without regenerating what is lost. Specifically, in response to arm amputation, the young jellyfish of Aurelia aurita rearrange their remaining arms, recenter their manubria, and rebuild their muscular networks, all completed within 12 hours to 4 days. We call this process symmetrization. We find that symmetrization is not driven by external cues, cell proliferation, cell death, and proceeded even when foreign arms were grafted on. Instead, we find that forces generated by the muscular network are essential. Inhibiting pulsation using muscle relaxants completely, and reversibly, blocked symmetrization. Furthermore, we observed that decreasing pulse frequency using muscle relaxants slowed symmetrization, whereas increasing pulse frequency by lowering the magnesium concentration in seawater accelerated symmetrization. A mathematical model that describes the compressive forces from the muscle contraction, within the context of the elastic response from the mesoglea and the ephyra geometry, can recapitulate the recovery of global symmetry. Thus, self-repair in Aurelia proceeds through the reorganization of existing parts, and is driven by forces generated by its own propulsion machinery. We find evidence for symmetrization across species of jellyfish ( Chrysaora pacifica , Mastigias sp., and Cotylorhiza tuberculata ). Significance Animals are endowed with the capacity to repair injuries. In this study, we found that, upon amputation, the moon jellyfish Aurelia aurita rearranges existing body parts and recovers radial symmetry within a few days. This unique strategy of self-repair, which we call symmetrization, requires mechanical forces generated by the muscle-based propulsion machinery. We observed a similar strategy in a number of other jellyfish species. This finding may contribute to understanding the evolutionary pressures governing biological self-repair strategies. Beyond biology, this finding may inspire a mechanically driven, self-organizing machinery that recovers essential geometry without regenerating precise forms.

All multicellular organisms are associated with a diverse and specific community of microorganisms; consequently, the microbiome is of fundamental importance for health and fitness of the multicellular host. However, studies on microbiome contribution to host fitness are in their infancy, in particular, for less well-established hosts such as the moon jellyfish Aurelia aurita . Here, we studied the impact of the native microbiome on the asexual reproduction and on further fitness traits (health, growth, and feeding) of the basal metazoan due to induced changes in its microbiome. We observed significant impact on all fitness traits analyzed, in particular, in the absence of the protective microbial shield and when challenged with marine potentially pathogenic bacterial isolates. Notable is the identified crucial importance of the native microbiome for the generation of offspring, consequently affecting life cycle decisions. Thus, we conclude that the microbiome is essential for the maintenance of a healthy metaorganism. All multicellular organisms are associated with microbial communities, ultimately forming a metaorganism. Several studies conducted on well-established model organisms point to immunological, metabolic, and behavioral benefits of the associated microbiota for the host. Consequently, a microbiome can influence the physiology of a host; moreover, microbial community shifts can affect host health and fitness. The present study aimed to evaluate the significance and functional role of the native microbiota for life cycle transitions and fitness of the cnidarian moon jellyfish Aurelia aurita . A comprehensive host fitness experiment was conducted studying the polyp life stage and integrating 12 combinations of treatments with microbiota modification (sterile conditions, foreign food bacteria, and potential pathogens). Asexual reproduction, e.g., generation of daughter polyps, and the formation and release of ephyrae were highly affected in the absence of the native microbiota, ultimately resulting in a halt of strobilation and ephyra release. Assessment of further fitness traits showed that health, growth, and feeding rate were decreased in the absence and upon community changes of the native microbiota, e.g., when challenged with selected bacteria. Moreover, changes in microbial community patterns were detected by 16S rRNA amplicon sequencing during the course of the experiment. This demonstrated that six operational taxonomic units (OTUs) significantly correlated and explained up to 97% of fitness data variability, strongly supporting the association of impaired fitness with the absence/presence of specific bacteria. Conclusively, our study provides new insights into the importance and function of the microbiome for asexual reproduction, health, and fitness of the basal metazoan A. aurita . IMPORTANCE All multicellular organisms are associated with a diverse and specific community of microorganisms; consequently, the microbiome is of fundamental importance for health and fitness of the multicellular host. However, studies on microbiome contribution to host fitness are in their infancy, in particular, for less well-established hosts such as the moon jellyfish Aurelia aurita . Here, we studied the impact of the native microbiome on the asexual reproduction and on further fitness traits (health, growth, and feeding) of the basal metazoan due to induced changes in its microbiome. We observed significant impact on all fitness traits analyzed, in particular, in the absence of the protective microbial shield and when challenged with marine potentially pathogenic bacterial isolates. Notable is the identified crucial importance of the native microbiome for the generation of offspring, consequently affecting life cycle decisions. Thus, we conclude that the microbiome is essential for the maintenance of a healthy metaorganism.

Recent development of environmental DNA (eDNA) analysis allows us to survey underwater macro-organisms easily and cost effectively; however, there have been no reports on eDNA detection or quantification for jellyfish. Here we present the first report on an eDNA analysis of marine jellyfish using Japanese sea nettle (Chrysaora pacifica) as a model species by combining a tank experiment with spatial and temporal distribution surveys. We performed a tank experiment monitoring eDNA concentrations over a range of time intervals after the introduction of jellyfish, and quantified the eDNA concentrations by quantitative real-time PCR. The eDNA concentrations peaked twice, at 1 and 8 h after the beginning of the experiment, and became stable within 48 h. The estimated release rates of the eDNA in jellyfish were higher than the rates previously reported in fishes. A spatial survey was conducted in June 2014 in Maizuru Bay, Kyoto, in which eDNA was collected from surface water and sea floor water samples at 47 sites while jellyfish near surface water were counted on board by eye. The distribution of eDNA in the bay corresponded with the distribution of jellyfish inferred by visual observation, and the eDNA concentration in the bay was ~13 times higher on the sea floor than on the surface. The temporal survey was conducted from March to November 2014, in which jellyfish were counted by eye every morning while eDNA was collected from surface and sea floor water at three sampling points along a pier once a month. The temporal fluctuation pattern of the eDNA concentrations and the numbers of observed individuals were well correlated. We conclude that an eDNA approach is applicable for jellyfish species in the ocean.

Nematocytes, the stinging cells of cnidarians, are the most evolutionarily ancient venom apparatus. These nanosyringe-like weaponry systems reach pressures of approximately 150 atmospheres before discharging and punching through the outer layer of the prey or predator at accelerations of more than 5 million g, making them one of the fastest biomechanical events known. To gain better understanding of the function of the complex, phylum-specific nematocyst organelle, and its venom payload, we compared the soluble nematocyst’s proteome from the sea anemone Anemonia viridis, the jellyfish Aurelia aurita, and the hydrozoan Hydra magnipapillata, each belonging to one of the three basal cnidarian lineages which diverged over 600 Ma. Although the basic morphological and functional characteristics of the nematocysts of the three organisms are similar, out of hundreds of proteins identified in each organism, only six are shared. These include structural proteins, a chaperone which may help maintain venon activity over extended periods, and dickkopf, an enigmatic Wnt ligand which may also serve as a toxin. Nevertheless, many protein domains are shared between the three organisms’ nematocyst content suggesting common proteome functionalities. The venoms of Hydra and Aurelia appear to be functionally similar and composed mainly of cytotoxins and enzymes, whereas the venom of the Anemonia is markedly unique and based on peptide neurotoxins. Cnidarian venoms show evidence for functional recruitment, yet evidence for diversification through positive selection, common to other venoms, is lacking. The final injected nematocyst payload comprises a mixture of dynamically evolving proteins involved in the development, maturation, maintenance, and discharge of the nematocysts, which is unique to each organism and potentially to each nematocyst type.

To gain understanding and predict how jellyfish populations will respond to anthropogenic changes, we first need to understand the factors that influence the distribution and abundance of current and historical populations. Hence, we have developed the first bioenergeticsbased population model for the ubiquitous jellyfish Aurelia spp. that incorporates both benthic and pelagic life history stages. This model tracks cohorts of both life stages with temperature- and/or consumption-driven relationships for growth, reproduction and mortality. We present an initial model application to test hypotheses for the environmental factors that control the initiation of strobilation and inter-annual variability in bloom timing and magnitude in Gulf of Mexico jellyfish populations between 1982 and 2007. To recreate the autumnal blooms of Aurelia spp. in the Gulf of Mexico, strobilation must commence while zooplankton biomass is increasing after the annual minimum. Under this scenario, the model simulated seasonal and inter-annual variability of Aurelia spp. biomass that corresponded well with observations. Markedly larger blooms in anomalously warm, high zooplankton years resulted from enhanced ephyrae production compounded by enhanced medusa growth under these conditions. This model confirms the importance of the polyp-to-ephyrae transition in regulating jellyfish bloom magnitude and provides a mechanistic model framework which can examine how future jellyfish populations might respond to climate change.

Marine collagen sources are potent alternatives due to abundant yield, low pathogen infection risk, high biocompatibility, and any religious and ethical restrictions compared to terrestrial collagen sources. In this research, we aim to investigate the biomaterials potential of the collagen from Aurelia aurita , which is a native jellyfish species in the Marmara Sea. Spectroscopic techniques were used to investigate the structure of jellyfish collagen (JCol) from acid-soluble fraction and compared to Jellagen® from Rhizostoma pulmo. MALDI-TOF showed the main peak of Jellagen® at 276,765.161 Da and jellyfish collagen at 276,761.687 Da. SDS-PAGE indicated α1 and α2 bands at about 122 kDa and 140 kDa, respectively. In FTIR and Raman spectra, the locations of amide bands of both species were almost the same. The pI of JCol was determined as 4.46. The particle size decreased abruptly at 43  o C from 890 to 290 nm. Water, organic and inorganic ratios of collagen were determined at 7.14%, 63.59, and 29.27 respectively. In DSC, the denaturation temperature (Td) of JCol was found at 43.7  o C and found to be higher than that of the collagens from jellyfishes that have been reported so far in the literature. Biocompatibility testing by metabolic assay revealed significantly higher fibroblast proliferation on collagen film than on the Tissue Culture Plate. To conclude, Aurelia aurita collagen would be a suitable source of collagen when biomaterials are needed to have high biocompatibility and unique macromolecular properties such as high denaturation temperatures.