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"Barcode Index Number"
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First record of Malacosoma franconica in the Romanian fauna (Lepidoptera, Lasiocampidae)
by
Chiper, Cristian
,
Székely, Levente
,
Scotnițchi, Sasha-Andrei
in
Barcode index number
,
Danube shore
,
DNA barcoding
2025
Malacosoma franconica ([Denis & Schiffermüller], 1775) (Lepidoptera, Lasiocampidae) is reported for the first time in Romania based on a male specimen found in the south-west of the country, on the shore of the Danube, very close to the border with Serbia. DNA barcoding data confirms the morphology-based identification of the specimen and shows that it is genetically similar to other conspecifics from southern and central Europe. An overview of the species' distribution in Serbia and Bulgaria shows that, although the species has a fragmented range and very few records from those areas, its presence in Romania is not completely unexpected given the proximity of records from the above-mentioned countries. The sandy grassland where the Romanian specimen was found corresponds well to the preferred habitat of M. franconica . This site, as well as other potentially suitable areas in Romania, deserve further research to assess the distribution and conservation status of this local, often threatened, moth.
Journal Article
DNA Barcode Library of Megadiverse Lepidoptera in an Alpine Nature Park (Italy) Reveals Unexpected Species Diversity
2023
Species inventories are a prerequisite for biodiversity monitoring and conservation, particularly in protected areas. However, the possibilities of a standardized survey of species diversity using DNA barcoding have so far hardly been implemented, especially in species-rich groups. A first-time molecular-based and nearly complete inventory of the megadiverse insect order Lepidoptera in a protected area in the Alps (Cottian Alps, Italy) was intended to test the possibilities and reliability of DNA-based identifications. From voucher material collected between 2019 and 2022, we successfully sequenced 1213 morphospecies that grouped into 1204 BINs (barcode index numbers), whereas DNA barcoding failed for another 18 species. A total of 35 species shared a BIN with one or more taxa, but a majority of 19 species could still be discriminated by divergent sequences. A total of 12 morphospecies split into two BINs. These species and a further 22 taxa with unique BINs and barcode divergences >2% to the nearest neighbor require taxonomic re-assessment. Two additional cryptic species from the study area were described recently. Finally, 16 species are newly recorded for Italy. Our study, therefore, demonstrates the importance of DNA barcoding for both faunistics and the discovery of cryptic diversity, even in apparently well-studied protected areas.
Journal Article
An Incomplete European Barcode Library Has a Strong Impact on the Identification Success of Lepidoptera from Greece
by
Huemer, Peter
,
Mutanen, Marko
in
Barcode Index Number (BIN)
,
Data systems
,
Deoxyribonucleic acid
2022
Species identification by means of DNA barcodes depends essentially on the scope and quality of a relevant reference library. The first analysis of a large number (about 600 morphospecies) of southern European Lepidoptera (Greece: Peloponnese) shows both the advantages and disadvantages with regard to a reliable identification of Mediterranean species. We determined 946 DNA barcode sequences from 47 families, of which 929 sequences from 46 families were successfully assigned to a Barcode Index Number (BIN) in the global Barcode of Life Data Systems (BOLD) database. A species level identification for 485 BINs representing 477 Linnaean names was successful. These taxa include 34 new records for Greece. However, 128 BINs (c. 20% of the inventory) could not be attached to a Linnaean name from referenced sequences available in BOLD. Of these BINs, 99 are new and hence represent unique records for BOLD. Intra- and inter-BIN divergences are presented and discussed. An initial and preliminary in-depth analysis of randomly selected species indicates an incomplete DNA barcode library in terms of Linnean taxa, in addition to a considerable number of probably undescribed species. It is therefore strongly recommended that the already advanced European barcode library of Lepidoptera should be supplemented with not-yet-sequenced taxa from the Mediterranean.
Journal Article
Persistent Gaps of Knowledge for Naming and Distinguishing Multiple Species of Crown-of-Thorns-Seastar in the Acanthaster planci Species Complex
by
Haszprunar, Gerhard
,
Wörheide, Gert
,
Vogler, Catherine
in
Acanthaster planci
,
animal morphology
,
Bins
2017
Nearly a decade ago, DNA barcoding (partial mitochondrial COI gene sequences) showed that there are at least four species in the Indo-Pacific within what was previously conceived to be a single Crown-of-Thorns-Seastar (COTS) species, Acanthaster planci. Two of these species—A. planci Linnaeus, 1758, distributed in the North Indian Ocean, and A. mauritiensis de Loriol, 1885, distributed in the South Indian Ocean—have been already unequivocally named. In contrast, the Pacific COTS (proposed name: A. solaris (Schreber, 1795) and the COTS from the Red Sea (still to be named) require further taxonomic work. COI barcoding sequences and Barcode Identification Numbers (BINs) are available for all four COTS species in the global Barcode of Life Database (BOLD). We recommend depositing voucher specimens or tissue samples suitable for DNA analyses when studying any aspect of COTS, and use BINs to identify species, to ensure that no information is lost on species allocation until unequivocal Linnean names are available for the Pacific and Red Sea species as well. We also review the differences between COTS species with respect to morphology, ecology, and toxicity. Future studies should widen the current biogeographic coverage of the different COTS species by strategically sampling neglected areas, especially at the geographic distribution limits of each species, to enhance our understanding of the diversity of this reef coral predator.
Journal Article
Systematics of Slovenian Dahlica Enderlein, 1912, subgenus Brevantennia Sieder, 1953 (Lepidoptera, Psychidae)
by
Rekelj, Jurij
,
Huemer, Peter
,
Lopez-Vaamonde, Carlos
in
barcode index number
,
cryptic d
,
Females
2022
The subgenus Brevantennia Sieder, 1953 of the genus Dahlica Enderlein, 1912 (Psychidae: Dahlicini) is represented by a group of 10 bagworm moth species, distributed in south-west and south-east Europe northwards to the Alps and Carpathians. This study is a revision of the subgenus Brevantennia species occurring in Slovenia based on our own comprehensive field studies, DNA barcoding and morphological analysis. Dahlica (B.) santicensis (Sieder, 1957) is established as bona spec. and D. (B.) gorskikotarica Weidlich, 2015, syn. nov. is synonymised with D. (B.) santicensis. Both D. (B.) adriatica (Rebel, 1919) and D. (B.) triglavensis (Rebel, 1919) are confirmed to occur in Slovenia. D. (B.) styriaca (Meier, 1957) is excluded from the checklist of Slovenian Lepidoptera fauna.
Journal Article
A DNA barcode library for katydids, cave crickets, and leaf-rolling crickets (Tettigoniidae, Rhaphidophoridae and Gryllacrididae) from Zhejiang Province, China
2022
Barcode libraries are generally assembled with two main objectives in mind: specimen identification and species discovery/delimitation. In this study, the standard COI barcode region was sequenced from 681 specimens belonging to katydids (Tettigoniidae), cave crickets (Rhaphidophoridae), and leaf-rolling crickets (Gryllacrididae) from Zhejiang Province, China. Of these, four COI-5P sequences were excluded from subsequent analyses because they were likely NUMTs (nuclear mitochondrial pseudogenes). The final dataset consisted of 677 barcode sequences representing 90 putative species-level taxa. Automated cluster delineation using the Barcode of Life Data System (BOLD) revealed 118 BINs (Barcodes Index Numbers). Among these 90 species-level taxa, 68 corresponded with morphospecies, while the remaining 22 were identified based on reverse taxonomy using BIN assignment. Thirteen of these morphospecies were represented by a single barcode (so-called singletons), and each of 19 morphospecies were split into more than one BIN. The consensus delimitation scheme yielded 55 Molecular Operational Taxonomic Units (MOTUs). Only four morphospecies ( I max > DNN) failed to be recovered as monophyletic clades (i.e., Elimaea terminalis , Phyllomimus klapperichi , Sinochlora szechwanensis and Xizicus howardi ), so it is speculated that these may be species complexes. Therefore, the diversity of katydids, cave crickets, and leaf-rolling crickets in Zhejiang Province is probably slightly higher than what current taxonomy would suggest.
Journal Article
DNA barcoding of the leaf-miner flies (Diptera, Agromyzidae) of Mitaraka, French Guiana
2022
Species level identification of Agromyzidae based on morphology is often challenging due to their small size and morphological homogeneity. DNA barcoding has been used regularly to assist with the identification of economically important species of Agromyzidae, but rarely as a tool for species delineation or identification in biodiversity surveys. The main objective of this study was to investigate whether DNA barcoding and the BIN (Barcoding Index) system could assist with species identification, species delineation, male/ female association, and diversity assessment of Agromyzidae material previously determined to morphospecies from Mitaraka, French Guiana. Amplification success was low, with sequences over 400 bp recovered for only 24 (48%) of the selected specimens. Sequences assigned to 17 morphospecies formed 16 distinct branches or clusters separated by very high (minimum of 10%) sequence divergence. Following the reassessment and subsequent reassignment of one specimen, congruence between morphology and DNA barcodes was high with a single instance of two morphospecies sharing identical sequences. While DNA barcoding did not assist with identification (none of our sequences matched those of named taxa in BOLD or GenBank), it did provide support for most of our morphospecies concepts, including male/female associations. The BIN system also provided access to information about the distribution and habitat preferences of several taxa. We conclude that DNA barcoding was a useful approach to study the species diversity of our samples but that much work remains to be done before it can be used as an identification tool for the Agromyzidae fauna of Mitaraka and the rest of the Neotropical region.
Journal Article
DNA barcoding of the horsefly fauna (Diptera, Tabanidae) of Croatia with notes on the morphology and taxonomy of selected species from Chrysopsinae and Tabaninae
by
Krčmar, Stjepan
,
Kučinić, Mladen
,
Pezzi, Marco
in
Central Europe
,
Eastern Europe
,
Identification key
2022
In the Croatian fauna, horseflies (Tabanidae) are represented by 78 species belonging to two subfamilies, five tribes, and 10 genera. Identification of these species is based on morphological characteristics. In this study, 43 species of horseflies were analyzed. The highest number of species (19) belongs to the genus Tabanus , followed by the genera Hybomitra with seven species, Haematopota with six species, Chrysops with four species, Atylotus and Philipomyia with two species each, and the genera Silvius , Dasyrhamphis , and Heptatoma with one species each. The standard DNA barcoding region of the mitochondrial cytochrome c oxidase gene, subunit I (COI), was sequenced and compared to the Barcode of Life Database (BOLD). Our analyses confirmed our morphological identifications and added 16 new Barcode Index Numbers (BINs) for Tabanidae to BOLD. Potential problems in the systematics and taxonomy of this family are highlighted.
Journal Article
Biodiversity inventories in high gear: DNA barcoding facilitates a rapid biotic survey of a temperate nature reserve
by
Mouttet, Raphaëlle
,
Layton, Kara
,
Monkhouse, Norman
in
Animalia
,
Barcode Index Numbers
,
Biodiversity
2015
Comprehensive biotic surveys, or ‘all taxon biodiversity inventories’ (ATBI), have traditionally been limited in scale or scope due to the complications surrounding specimen sorting and species identification. To circumvent these issues, several ATBI projects have successfully integrated DNA barcoding into their identification procedures and witnessed acceleration in their surveys and subsequent increase in project scope and scale. The Biodiversity Institute of Ontario partnered with the rare Charitable Research Reserve and delegates of the 6th International Barcode of Life Conference to complete its own rapid, barcode-assisted ATBI of an established land trust in Cambridge, Ontario, Canada. The existing species inventory for the rare Charitable Research Reserve was rapidly expanded by integrating a DNA barcoding workflow with two surveying strategies – a comprehensive sampling scheme over four months, followed by a one-day bioblitz involving international taxonomic experts. The two surveys resulted in 25,287 and 3,502 specimens barcoded, respectively, as well as 127 human observations. This barcoded material, all vouchered at the Biodiversity Institute of Ontario collection, covers 14 phyla, 29 classes, 117 orders, and 531 families of animals, plants, fungi, and lichens. Overall, the ATBI documented 1,102 new species records for the nature reserve, expanding the existing long-term inventory by 49%. In addition, 2,793 distinct Barcode Index Numbers (BINs) were assigned to genus or higher level taxonomy, and represent additional species that will be added once their taxonomy is resolved. For the 3,502 specimens, the collection, sequence analysis, taxonomic assignment, data release and manuscript submission by 100+ co-authors all occurred in less than one week. This demonstrates the speed at which barcode-assisted inventories can be completed and the utility that barcoding provides in minimizing and guiding valuable taxonomic specialist time. The final product is more than a comprehensive biotic inventory – it is also a rich dataset of fine-scale occurrence and sequence data, all archived and cross-linked in the major biodiversity data repositories. This model of rapid generation and dissemination of essential biodiversity data could be followed to conduct regional assessments of biodiversity status and change, and potentially be employed for evaluating progress towards the Aichi Targets of the Strategic Plan for Biodiversity 2011–2020.
Journal Article
DNA barcoding for bio-surveillance of emerging pests and species identification in Afrotropical Prioninae (Coleoptera, Cerambycidae)
by
Grobbelaar, Elizabeth
,
Javal, Marion
,
Terblanche, John
in
Africa
,
Afrotropical region
,
Barcode Index Number (BIN)
2021
DNA barcoding has been succesfully used for bio-surveillance of forest and agricultural pests in temperate areas, but has few applications in the tropics and particulary in Africa. Cacosceles newmannii (Coleoptera: Cerambycidae) is a Prioninae species that is locally causing extensive damage in commercially-grown sugarcane in the KwaZulu-Natal Province in South Africa. Due to the risk of spread of this species to the rest of southern Africa and to other sugarcane growing regions, clear and easy identification of this pest is critical for monitoring and for phytosanitary services. The genus Cacosceles Newman, 1838 includes four species, most being very similar in morphology. The damaging stage of the species is the larva, which is inherently difficult to distinguish morphologically from other Cerambycidae species. A tool for rapid and reliable identification of this species was needed by plant protection and quarantine agencies to monitor its potential abundance and spread. Here, we provide newly-generated barcodes for C. newmannii that can be used to reliably identify any life stage, even by non-trained taxonomists. In addition, we compiled a curated DNA barcoding reference library for 70 specimens of 20 named species of Afrotropical Prioninae to evaluate DNA barcoding as a valid tool to identify them. We also assessed the level of deeply conspecific mitochondrial lineages. Sequences were assigned to 42 different Barcode Index Numbers (BINs), 28 of which were new to BOLD. Out of the 20 named species barcoded, 11 (52.4%) had their own unique Barcode Index Number (BIN). Eight species (38.1%) showed multiple BINs with no morphological differentiation. Amongst them, C. newmannii showed two highly divergent genetic clusters which co-occur sympatrically, but further investigation is required to test whether they could represent new cryptic species.
Journal Article