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"Barley"
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The Genetic Basis of Composite Spike Form in Barley and ‘Miracle-Wheat’
2015
Inflorescences of the tribe Triticeae, which includes wheat (Triticum sp. L.) and barley (Hordeum vulgare L.) are characterized by sessile spikelets directly borne on the main axis, thus forming a branchless spike. ‘Compositum-Barley’ and tetraploid ‘Miracle-Wheat’ (T. turgidum convar. compositum (L.f.) Filat.) display noncanonical spike-branching in which spikelets are replaced by lateral branch-like structures resembling small-sized secondary spikes. As a result of this branch formation ‘Miracle-Wheat’ produces significantly more grains per spike, leading to higher spike yield. In this study, we first isolated the gene underlying spike-branching in ‘Compositum-Barley,’ i.e., compositum 2 (com2). Moreover, we found that COM2 is orthologous to the branched headt (bht) locus regulating spike branching in tetraploid ‘Miracle-Wheat.’ Both genes possess orthologs with similar functions in maize BRANCHED SILKLESS 1 (BD1) and rice FRIZZY PANICLE/BRANCHED FLORETLESS 1 (FZP/BFL1) encoding AP2/ERF transcription factors. Sequence analysis of the bht locus in a collection of mutant and wild-type tetraploid wheat accessions revealed that a single amino acid substitution in the DNA-binding domain gave rise to the domestication of ‘Miracle-Wheat.’ mRNA in situ hybridization, microarray experiments, and independent qRT-PCR validation analyses revealed that the branch repression pathway in barley is governed through the spike architecture gene Six-rowed spike 4 regulating COM2 expression, while HvIDS1 (barley ortholog of maize INDETERMINATE SPIKELET 1) is a putative downstream target of COM2. These findings presented here provide new insights into the genetic basis of spike architecture in Triticeae, and have disclosed new targets for genetic manipulations aiming at boosting wheat’s yield potential.
Journal Article
Brewing with malted barley or raw barley: what makes the difference in the processes?
2019
Malted barley is the main source for fermentable sugars used by yeasts in the traditional brewing of beers but its use has been increasingly substituted by unmalted barley and other raw grain adjuncts in recent years. The incorporation of raw grains is mainly economically driven, with the added advantage of improved sustainability, by reducing reliance on the malting process and its associated cost. The use of raw grains however, especially in high proportion, requires modifications to the brewing process to accommodate the lack of malt enzymes and the differences in structural and chemical composition between malted and raw grains. This review describes the traditional malting and brewing processes for the production of full malt beer, compares the modifications to these processes, namely milling and mashing, when raw barley or other grains are used in the production of wort—a solution of fermentable extracts metabolized by yeast and converted into beer, and discusses the activity of endogenous malt enzymes and the use of commercial brewing enzyme cocktails which enable high adjunct brewing.
Journal Article
Analysis of genetic diversity and population structure of some Ethiopian barley
by
Zewodu, Alemayehu
,
Mohammed, Wassu
,
Shiferaw, Eleni
in
Analysis
,
Barley
,
Ethylenediaminetetraacetic acid
2024
Understanding the genetic diversity of existing genetic resources at the DNA level is an effective approach for germplasm conservation and utilization in breeding programs. However, the patterns of genetic diversity and population structure remain poorly characterized, making germplasm conservation and breeding efforts difficult to succeed. Thus, this study is aimed to evaluate the genetic diversity and population structure of 49 barley accessions collected from different geographic origins in Ethiopia. Twelve SSR markers were used to analyze all accessions and a total of 61 alleles were found, with a mean of 5.08 alleles per locus. The analysis pointed out the existence of moderate to high values of polymorphic information content ranging from 0.39 to 0.91 and the mean Shannon diversity index(I) was 1.25, indicating that they were highly informative markers. The highest Euclidean distance (1.32) was computed between accession 9950 and two accessions (247011 and 9949), while the lowest Euclidean distance (0.00) was estimated between accessions 243191 and 243192. The result of molecular variance analysis revealed that the highest variation was found among accessions (47) relative to within accessions (44) and among geographic origins (9). Cluster analysis grouped the 49 barley accessions into three major clusters regardless of their geographic origin which could be due to the presence of considerable gene flow (2.72). The result of the STRUCTURE analysis was consistent with neighbor-joining clustering and principal coordinate analysis. Generally, this study concluded that the variation among accessions was more important than the difference in geographical regions to develop an appropriate conservation strategy and for parental selection to use in breeding programs. This information will be helpful for barley conservation and breeding, and it may speed up the development of new competing barley varieties.
Journal Article
Response of salt stress resistance in highland barley
2023
Highland barley (Hordeum vulgare L. var. nudum) is a grain crop that grows on the plateau under poor and high salt conditions. Therefore, to cultivate high-quality highland barley varieties, it is necessary to study the molecular mechanism of strong resistance in highland barley, which has not been clearly explained. In this study, a high concentration of NaCl (240 mmol/L), simulating the unfavorable environment, was used to spray the treated highland barley seeds. Transcriptomic analysis revealed that the expression of more than 8,000 genes in highland barley seed cells was significantly altered, suggesting that the metabolic landscape of the cells was deeply changed under salt stress. Through the KEGG analysis, the phenylpropane metabolic pathway was significantly up-regulated under salt stress, resulting in the accumulation of polyphenols, flavonoids, and lignin, the metabolites for improving the stress resistance of highland barley seed cells, being increased 2.71, 1.22, and 1.17 times, respectively. This study discovered that the phenylpropane metabolic pathway was a significant step forward in understanding the stress resistance of highland barley, and provided new insights into the roles of molecular mechanisms in plant defense.
Journal Article
Identification of novel QTL contributing to barley yellow mosaic resistance in wild barley (Hordeum vulgare spp. spontaneum)
2021
Background
Barley yellow mosaic disease (BYMD) caused by
Barley yellow mosaic virus
(BaYMV) and
Barley mild mosaic virus
(BaMMV) seriously threatens the production of winter barley. Cultivating and promoting varieties that carry disease-resistant genes is one of the most powerful ways to minimize the disease’s effect on yield. However, as the BYMD virus mutates rapidly, resistance conferred by the two cloned
R
genes to the virus had been overcome by new virus strains. There is an urgent need for novel resistance genes in barley that convey sustainable resistance to newly emerging virus strains causing BYMD.
Results
A doubled haploid (DH) population derived from a cross of SRY01 (BYMD resistant wild barley) and Gairdner (BYMD susceptible barley cultivar) was used to explore for QTL of resistance to BYMD in barley. A total of six quantitative trait loci (
qRYM-1H
,
qRYM-2Ha
,
qRYM-2Hb
,
qRYM-3H
,
qRYM-5H,
and
qRYM-7H
) related to BYMD resistance were detected, which were located on chromosomes 1H, 2H, 3H, 5H, and 7H. Both
qRYM-1H
and
qRYM-2Ha
were detected in all environments.
qRYM-1H
was found to be overlapped with
rym7,
a known
R
gene to the disease, whereas
qRYM-2Ha
is a novel QTL on chromosome 2H originated from SRY01, explaining phenotypic variation from 9.8 to 17.8%. The closely linked InDel markers for
qRYM-2Ha
were developed which could be used for marker-assisted selection in barley breeding.
qRYM-2Hb
and
qRYM-3H
were stable QTL for specific resistance to Yancheng and Yangzhou virus strains, respectively.
qRYM-5H
and
qRYM-7H
identified in Yangzhou were originated from Gairdner.
Conclusions
Our work is focusing on a virus disease (barley yellow mosaic) of barley. It is the first report on BYMD-resistant QTL from wild barley accessions. One novel major QTL (
qRYM-2Ha
) for the resistance was detected. The consistently detected new genes will potentially serve as novel sources for achieving pre-breeding barley materials with resistance to BYMD.
Journal Article
Plant density modifies root system architecture in spring barley
2019
Previously, we showed that sowing density influences root length density (RLD), specific root length (SRL) especially in the topsoil, and shallowness of fine roots of field grown spring barley (Hordeum vulagre L.). Here, we ask which trait components may explain these observed changes. We grew two spring barley cultivars at contrasting sowing densities in both field trials and rhizotrons, and excavated root crowns and imaged root growth. In the field, tiller and nodal root numbers per plant decreased with increasing sowing density, however, nodal roots per tiller, seminal roots per plant, and lateral branching frequencies were not affected. Branching angle did not or only slightly declined with increasing sowing density. In rhizotrons, aboveground only tiller number was affected by sowing density. Root growth rates and counts were not (or only slightly) affected. Greater RLD at high sowing densities is largely explained by greater main root number per area. The altered seminal to nodal root ratio might explain observed increases in SRL. We conclude that sowing density is a modifier of root system architecture with probable functional consequences, and thereby an important factor to be considered in root studies or the development of root ideotypes for agriculture.
Journal Article
Novel resistance to the Bymovirus BaMMV established by targeted mutagenesis of the PDIL5‐1 susceptibility gene in barley
2023
Summary The Potyviridae are the largest family of plant‐pathogenic viruses. Members of this family are the soil‐borne bymoviruses barley yellow mosaic virus (BaYMV) and barley mild mosaic virus (BaMMV), which, upon infection of young winter barley seedlings in autumn, can cause yield losses as high as 50%. Resistance breeding plays a major role in coping with these pathogens. However, some viral strains have overcome the most widely used resistance. Thus, there is a need for novel sources of resistance. In ancient landraces and wild relatives of cultivated barley, alleles of the susceptibility factor PROTEIN DISULFIDE ISOMERASE LIKE 5–1 (PDIL5‐1) were identified to confer resistance to all known strains of BaYMV and BaMMV. Although the gene is highly conserved throughout all eukaryotes, barley is thus far the only species for which PDIL5‐1‐based virus resistance has been reported. Whereas introgression by crossing to the European winter barley breeding pool is tedious, time‐consuming and additionally associated with unwanted linkage drag, the present study exemplifies an approach to targeted mutagenesis of two barley cultivars employing CRISPR‐associated endonuclease technology to induce site‐directed mutations similar to those described for PDIL5‐1 alleles that render certain landraces resistant. Homozygous primary mutants were produced in winter barley, and transgene‐free homozygous M2 mutants were produced in spring barley. A variety of mutants carrying novel PDIL5‐1 alleles were mechanically inoculated with BaMMV, by which all frameshift mutations and certain in‐frame mutations were demonstrated to confer resistance to this virus. Under greenhouse conditions, virus‐resistant mutants showed no adverse effects in terms of growth and yield.
Journal Article
Competition between Two Species of the Genus ISitophilus/I on Wheat and Barley
2023
Species can coexist and infest stored products at different population densities. We evaluated the population growth of Sitophilus oryzae (L.) and Sitophilus granarius (L.) (Coleoptera: Curculionidae) on wheat and barley in laboratory conditions. Ten adults of each species were placed in vials containing wheat or barley alone or in combination, and the number of adults was counted after 65 and 120 days. These tests were performed at 25 and 30 °C. Moreover, the number of damaged grain kernels and the weight of frass produced were also recorded. In general, the simultaneous presence of both species had a negative effect on the population growth of either S. oryzae or S. granarius. Nevertheless, no significant differences were noted regarding the number of damaged kernels and the weight of frass in most of the combinations tested. Moreover, the temperature seems to have a negative effect if both species were combined, especially at 30 °C. Our results showed that there was competition in the progeny production capacity when both species were together, but this competition was temperature and commodity-mediated.
Journal Article