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Phytopathogenic fungi frequently contain dispensable chromosomes, some of which contribute to host range or pathogenicity. In Leptosphaeria maculans, the stem canker agent of oilseed rape (Brassica napus), the minichromosome was previously suggested to be dispensable, without evidence for any role in pathogenicity. Using genetic and genomic approaches, we investigated the inheritance and molecular determinant of an L. maculans-Brassica rapa incompatible interaction.Single gene control of the resistance was found, while all markers located on the L. maculans minichromosome, absent in the virulent parental isolate, co-segregated with the avirulent phenotype. Only one candidate avirulence gene was identified on the minichromosome, validated by complementation experiments and termed AvrLm11. The minichromosome was frequently lost following meiosis, but the frequency of isolates lacking it remained stable in field populations sampled at a 10-yr time interval, despite a yearly sexual stage in the L. maculans life cycle.This work led to the cloning of a new 'lost in the middle of nowhere' avirulence gene of L. maculans, interacting with a B. rapa resistance gene termed Rlm11 and introgressed into B. napus. It demonstrated the dispensability of the L. maculans minichromosome and suggested that its loss generates a fitness deficit.

Plants can recruit beneficial rhizomicrobes to combat environmental stimuli, but the upstream signaling through which plants sense stress to initiate rhizomicrobial recruitment still remains unclear. This study elucidates the role of long-distance ROS signaling in driving the recruitment of beneficial rhizobacteria to establish systemic acclimation following local organic pollutant stress. Plant leaves sense various organic pollutants to generate ROS, followed by the occurrence of a long-distance ROS wave from leaves to roots via a Ca 2+ -RBOH-ROS signaling module. Elevated ROS in roots plays dual functions. First, ROS stimulates plant carbon release into the rhizosphere by increasing the permeability of root cell membranes. The released carbon flux enriches plant-beneficial bacterial genera, which in turn promotes plant growth and pollutant degradation. Second, NO acts downstream of ROS to loosen root cell walls, facilitating rhizobacterial colonization. Our findings show how plants deploy systemic signaling acquire help from rhizomicrobes, extending our understanding of plant environmental adaptability. Here the authors show a role for long-distance ROS signaling in driving the recruitment and colonization of beneficial rhizobacteria by plants. This allows plants to establish acclimation in systemic tissues following local organic pollutant stress.

Rapeseed is one of the most important oil crops in the world. Its yield and quality are severely restricted by biotic stress and abiotic stress. Rapeseed seeds play a crucial role in the propagation process, and the microorganisms in the seeds can be vertically passed on to the next generation, which greatly affects the quality, yield and growth of rapeseed. However, from a group perspective, there is currently a lack of systematic research on the composition of seed-associated microbiome within rapeseed seeds. This study utilized the transcriptome data of 218 rapeseed seeds that have been published, focusing on analyzing and comparing the dynamic changes and functional differences in the composition of seed-associated microbiome in rapeseed seeds under normal growth and development, biologic stress and abiotic stress conditions. Since we used public transcriptome data without surface sterilisation control, we refered to the detected microorganisms as seed-associated microbiome. The advantage of this study lies in its application of this method to a large-scale sample of rapeseed populations, which systematically revealed the response characteristics of seed-associated microbiome under different stress conditions. Interestingly, some widely distributed genera were not detected, while rare taxa were found under specific conditions, warranting further verification. Since these microorganisms originated from the seeds, their compatibility with plants and colonization ability may far exceed those of soil-derived agents. In the future, high-throughput screening of strains with excellent antagonistic or repellent effects against major diseases and pests of rapeseed can be conducted from these unique seed-associated microbiome. These strains that were confirmed by culture-based, amplicon or metagenomic approaches can then be used to develop seed coating agents or soil inoculants.

Rapeseed (Brassica napus) is an essential oil resource, but its yield can be significantly compromised by Sclerotinia sclerotiorum (S. sclerotiorum) infection. Due to the absence of rapeseed strains that are highly or completely immune to S. sclerotiorum, enhancing rapeseed resistance through genetic approaches is challenging. In this study, we developed a novel method to enhance rapeseed resistance to S. sclerotiorum using β-ocimene. Our results demonstrated that β-ocimene treatment significantly strengthened the defense capabilities of rapeseed. β-ocimene treatment can simultaneously activate multiple defense-related signaling pathways, including jasmonic acid signaling, salicylic acid signaling, and MAPK signaling, in rapeseed, while also inducing the accumulation of secondary metabolites coniferyl aldehyde—a key secondary metabolite in the phenylpropanoid pathway critical for plant defense responses. Furthermore, applying coniferyl aldehyde to the leaves of rapeseed can remarkably enhance its resistance to sclerotinia disease. Collectively, these findings confirm that β-ocimene activates the defense system of rapeseed, elevates the content of coniferyl aldehyde, and thereby enables rapeseed to effectively combat sclerotinia disease. The metabolomics data are available via MetaboLights under the identifier MTBLS12510. In conclusion, this study not only uncovers the mechanism by which β-ocimene induces rapeseed resistance to sclerotinia disease but also presents a novel approach for its prevention and control.

Organic liquid fertilizers from livestock manure are increasingly recognized as sustainable amendments influencing soil bacterial communities. Yet, their direct impacts on bacterial composition and crop functionality remain unclear. Addressing this gap, we developed a bio-liquid fertilizer (LBF) by culturing Chlorella fusca in a purified pig manure-based medium. We compared its effects with chemical (CLF) and fermented (FLM) liquid fertilizers on Chinese cabbage ( Brassica rapa subsp. pekinensis ). We aimed to determine how organic bio-liquid fertilizers enhance crop health and soil bacterial balance, contributing to sustainable agricultural practices. Although LBF did not surpass CLF in promoting growth, it significantly increased antioxidant compounds (polyphenols, flavonoids), sugars, and antioxidant activities, including nitrite-scavenging capacity and reducing power. Soil bacterial communities were strongly correlated with key chemical properties (Na, K, NO 3 – -N, Ca, pH). Notably, Litorilinea decreased under CLF, and Sphingomonas and Nocardioides declined under FLM, whereas LBF treatment increased all three genera, suggesting improved bacterial conditions. These findings demonstrate that a well-designed organic bio-liquid fertilizer can bridge knowledge gaps by enhancing plant functionality and promoting beneficial soil bacteria. This approach supports more efficient nutrient recycling and may foster greater resilience and sustainability in modern farming systems.

Selenium (Se) is an essential trace element that plays a critical role in human tissue formation, metabolism, and physiological functions. However, many individuals worldwide suffer from Se deficiency diseases. This study aims to evaluate the impact of Se-tolerant LF-17 agents and exogenous Na 2 SeO 3 application on the growth, enzyme activity, and metabolic characteristics of rape seedlings. Treatment LF-3 (inoculation of Se-tolerant LF-17 agent and exogenous Na 2 SeO 3, with the soil Se concentration of 5 mg/kg) led to a 38.62% increase in plant height and a 116.7% increase in fresh weight. And the Se-tolerant LF-17 agent in treatment LF-3 also reduced the oxidative stress induced by exogenous Na 2 SeO 3 compared to that of treatment LF-2 (with the same amount exogenous Na 2 SeO 3 only), as evidenced by the lower activities of SOD, POD, and CAT, as well as less content of malondialdehyde. Furthermore, the upregulation of metabolic pathways such as “cuticle, suberine, and wax biosynthesis” “flavonoid biosynthesis,” and “terpenoid backbone biosynthesis” enhanced the plant’s stress resistance as revealed by non-targeted metabolomics sequencing method. This approach offers promising applications for improving Se bioavailability in crops, mitigating Se toxicity, addressing global Se deficiency challenges and is expected to contribute to fulfilling the Se supplementation needs of the population.

Below-ground microbial communities influence plant diversity, plant productivity, and plant community composition. Given these strong ecological effects, are interactions with below-ground microbes also important for understanding natural selection on plant traits? Here, we manipulated below-ground microbial communities and the soil moisture environment on replicated populations of Brassica rapa to examine how microbial community structure influences selection on plant traits and mediates plant responses to abiotic environmental stress. In soils with experimentally simplified microbial communities, plants were smaller, had reduced chlorophyll content, produced fewer flowers, and were less fecund when compared with plant populations grown in association with more complex soil microbial communities. Selection on plant growth and phenological traits also was stronger when plants were grown in simplified, less diverse soil microbial communities, and these effects typically were consistent across soil moisture treatments. Our results suggest that microbial community structure affects patterns of natural selection on plant traits. Thus, the below-ground microbial community can influence evolutionary processes, just as recent studies have demonstrated that microbial diversity can influence plant community and ecosystem processes.

The temporal dynamics of rhizosphere and root microbiota composition was compared between healthy and infected Chinese cabbage plants by the pathogen Plasmodiophora brassicae. When inoculated with P. brassicae, disease was measured at five sampling dates from early root hair infection to late gall development. The first symptoms of clubroot disease appeared 14 days after inoculation (DAI) and increased drastically between 14 and 35 DAI. The structure of microbial communities associated to rhizosphere soil and root from healthy and inoculated plants was characterized through high-throughput DNA sequencing of bacterial (16S) and fungal (18S) molecular markers and compared at each sampling date. In healthy plants, Proteobacteria and Bacteroidetes bacterial phyla dominated the rhizosphere and root microbiota of Chinese cabbage. Rhizosphere bacterial communities contained higher abundances of Actinobacteria and Firmicutes compared to the roots. Moreover, a drastic shift of fungal communities of healthy plants occurred between the two last sampling dates, especially in plant roots, where most of Ascomycota fungi dominated until they were replaced by a fungus assigned to the Chytridiomycota phylum. Parasitic invasion by P. brassicae disrupted the rhizosphere and root-associated community assembly at a late step during the root secondary cortical infection stage of clubroot disease. At this stage, Flavisolibacter and Streptomyces in the rhizosphere, and Bacillus in the roots, were drastically less abundant upon parasite invasion. Rhizosphere of plants colonized by P. brassicae was significantly more invaded by the Chytridiomycota fungus, which could reflect a mutualistic relationship in this compartment between these two microorganisms.

Background The modification of protein substrates by small ubiquitin-related modifier (SUMO) plays a vital role in plants subjected to biotic and abiotic stresses. However, its role in the stress responses of Brassica plants remains poorly understood. Results A genome-wide analysis revealed the presence of 30 SUMOylation genes in the Caixin genome. These results demonstrated that the Caixin genome contains all the necessary components for SUMOylation. Analysis of the cis -acting elements revealed that the promoters of SUMOylation genes presented diverse combinations of developmental and stress-related cis -regulatory elements. The RNA-seq data indicated that 23 SUMOylation genes presented relatively high expression levels under normal conditions and exhibited a notable decrease in expression following Pectobacterium carotovorum subsp. carotovorum ( Pcc ) infection. Additionally, dynamic alterations in SUMO conjugates were observed in response to Pcc infection. Conclusions The Caixin genome contains genes involved in SUMOylation. The majority of these genes presented multiple copies, and analyses of their transcription and protein profiles indicate that they may play a role in the response to Pcc infection.

Blackleg disease, caused by Leptosphaeria spp. fungi, is one of the most important diseases of Brassica napus, responsible for severe yield losses worldwide. Blackleg resistance is controlled by major R genes and minor quantitative trait loci (QTL). Due to the high adaptation ability of the pathogen, R-mediated resistance can be easily broken, while the resistance mediated via QTL is believed to be more durable. Thus, the identification of novel molecular markers linked to blackleg resistance for B. napus breeding programs is essential. In this study, 183 doubled haploid (DH) rapeseed lines were assessed in field conditions for resistance to Leptosphaeria spp. Subsequently, DArTseq-based Genome-Wide Association Study (GWAS) was performed to identify molecular markers linked to blackleg resistance. A total of 133,764 markers (96,121 SilicoDArT and 37,643 SNP) were obtained. Finally, nine SilicoDArT and six SNP molecular markers were associated with plant resistance to Leptosphaeria spp. at the highest significance level, p < 0.001. Importantly, eleven of these fifteen markers were found within ten genes located on chromosomes A06, A07, A08, C02, C03, C06 and C08. Given the immune-related functions of the orthologues of these genes in Arabidopsis thaliana, the identified markers hold great promise for application in rapeseed breeding programs.