Catalogue Search | MBRL
Search Results Heading
Explore the vast range of titles available.
MBRLSearchResults
-
DisciplineDiscipline
-
Is Peer ReviewedIs Peer Reviewed
-
Item TypeItem Type
-
SubjectSubject
-
YearFrom:-To:
-
More FiltersMore FiltersSourceLanguage
Done
Filters
Reset
528
result(s) for
"CCM"
Sort by:
Responses of macroalgae to CO2 enrichment cannot be inferred solely from their inorganic carbon uptake strategy
by
McGraw, Christina M.
,
Virtue, Patti
,
Britton, Damon
in
carbon dioxide‐concentrating mechanism
,
carbon uptake strategy
,
CO2 enrichment
2019
Increased plant biomass is observed in terrestrial systems due to rising levels of atmospheric CO2, but responses of marine macroalgae to CO2 enrichment are unclear. The 200% increase in CO2 by 2100 is predicted to enhance the productivity of fleshy macroalgae that acquire inorganic carbon solely as CO2 (non‐carbon dioxide‐concentrating mechanism [CCM] species—i.e., species without a carbon dioxide‐concentrating mechanism), whereas those that additionally uptake bicarbonate (CCM species) are predicted to respond neutrally or positively depending on their affinity for bicarbonate. Previous studies, however, show that fleshy macroalgae exhibit a broad variety of responses to CO2 enrichment and the underlying mechanisms are largely unknown. This physiological study compared the responses of a CCM species (Lomentaria australis) with a non‐CCM species (Craspedocarpus ramentaceus) to CO2 enrichment with regards to growth, net photosynthesis, and biochemistry. Contrary to expectations, there was no enrichment effect for the non‐CCM species, whereas the CCM species had a twofold greater growth rate, likely driven by a downregulation of the energetically costly CCM(s). This saved energy was invested into new growth rather than storage lipids and fatty acids. In addition, we conducted a comprehensive literature synthesis to examine the extent to which the growth and photosynthetic responses of fleshy macroalgae to elevated CO2 are related to their carbon acquisition strategies. Findings highlight that the responses of macroalgae to CO2 enrichment cannot be inferred solely from their carbon uptake strategy, and targeted physiological experiments on a wider range of species are needed to better predict responses of macroalgae to future oceanic change. In this detailed physiological study, we tested the hypothesis that the responses of macroalgae to CO2 enrichment can be predicted by their carbon uptake strategy, by comparing growth, productivity, and biochemical responses of a macroalgal species with a carbon dioxide‐concentrating mechanism (CCM) with a species lacking this mechanism (non‐CCM). Growth and photosynthetic rates in the non‐CCM species were unaffected by CO2 enrichment, whereas for the CCM species, growth rates increased—opposite to current dogma. These experimental results, together with a new analysis of literature, reveal that carbon uptake strategy is a poor indicator of the responses of macroalgae to CO2 enrichment.
Journal Article
The Chlamydomonas CO2-concentrating mechanism and its potential for engineering photosynthesis in plants
2018
To meet the food demands of a rising global population, innovative strategies are required to increase crop yields. Improvements in plant photosynthesis by genetic engineering show considerable potential towards this goal. One prospective approach is to introduce a CO2-concentrating mechanism into crop plants to increase carbon fixation by supplying the central carbon-fixing enzyme, Rubisco, with a higher concentration of its substrate, CO2. A promising donor organism for the molecular machinery of this mechanism is the eukaryotic alga Chlamydomonas reinhardtii. This review summarizes the recent advances in our understanding of carbon concentration in Chlamydomonas, outlines the most pressing gaps in our knowledge and discusses strategies to transfer a CO2-concentrating mechanism into higher plants to increase photosynthetic performance.
Journal Article
Experimental Study and CFD Modeling of Fluid Flow and Heat Transfer Characteristics in a Mini-Channel Heat Sink Using Simcenter STAR-CCM+ Software
by
Piasecka, Magdalena
,
Piasecki, Artur
,
Dadas, Norbert
in
Finite volume method
,
flow
,
Heat exchangers
2022
The present work describes an experimental study and CFD modeling of fluid flow and heat transfer characteristics in a heat sink with several asymmetrical heated mini-channels. The data from the experimental research were the basis for numerical calculations. During experiments, the temperature measurement of the outer heater surface was performed by infrared thermography to verify the results of numerical calculations performed in Simcenter STAR-CCM+ software. The main objective was to determine the values of the parameters tested to evaluate the intensity of the heat transfer processes. In the numerical simulations, important variables, mainly the working fluid, heater material, the spatial orientation of the test section, and the number of mini-channels, were assumed. The results of the numerical computations were discussed. Due to simulations, it was possible to indicate which parameters tested in terms of heat transfer turned out to be the most effective. Furthermore, a mesh dependency analysis based on the grid convergence index (GCI) was performed. The residuals, as good indicators of convergence, achieved low values. Generally, the data presented showed satisfactory convergence of the results achieved as a result of the computational procedure.
Journal Article
Bottom-up linkages between primary production, zooplankton, and fish in a shallow, hypereutrophic lake
by
Matsuzaki, Shin-Ichiro S.
,
Takamura, Noriko
,
Nakagawa, Megumi
in
Abundance
,
Animals
,
Aquatic ecosystems
2018
Nutrient supply is a key bottom-up control of phytoplankton primary production in lake ecosystems. Top-down control via grazing pressure by zooplankton also constrains primary production and primary production may simultaneously affect zooplankton. Few studies have addressed these bidirectional interactions. We used convergent cross-mapping (CCM), a numerical test of causal associations, to quantify the presence and direction of the causal relationships among environmental variables (light availability, surface water temperature, NO3-N, and PO4-P), phytoplankton community composition, primary production, and the abundances of five functional zooplankton groups (large cladocerans, small cladocerans, rotifers, calanoids, and cyclopoids) in Lake Kasumigaura, a shallow, hypereutrophic lake in Japan. CCM suggested that primary production was causally influenced by NO3-N and phytoplankton community composition; there was no detectable evidence of a causal effect of zooplankton on primary production. Our results also suggest that rotifers and cyclopoids were forced by primary production, and cyclopoids were further influenced by rotifers. However, our CCM suggested that primary production was weakly influenced by rotifers (i.e., bidirectional interaction). These findings may suggest complex linkages between nutrients, primary production, and rotifers and cyclopoids, a pattern that has not been previously detected or has been neglected. We used linear regression analysis to examine the relationships between the zooplankton community and pond smelt (Hypomesus nipponensis), the most abundant planktivore and the most important commercial fish species in Lake Kasumigaura. The relative abundance of pond smelt was significantly and positively correlated with the abundances of rotifers and cyclopoids, which were causally influenced by primary production. This finding suggests that bottom-up linkages between nutrient, primary production, and zooplankton abundance might be a key mechanism supporting high planktivore abundance in eutrophic lakes. Because increases in primary production and cyanobacteria blooms are likely to occur simultaneously in hypereutrophic lakes, our study highlights the need for ecosystem management to resolve the conflict between good water quality and high fishery production.
Journal Article
Rubisco and carbon-concentrating mechanism co-evolution across chlorophyte and streptophyte green algae
by
Carmo-Silva, Elizabete
,
Müller, Karin H.
,
Orr, Douglas J.
in
Affinity
,
Algae
,
Amino acid sequence
2020
• Green algae expressing a carbon-concentrating mechanism (CCM) are usually associated with a Rubisco-containing micro-compartment, the pyrenoid. A link between the small subunit (SSU) of Rubisco and pyrenoid formation in Chlamydomonas reinhardtii has previously suggested that specific RbcS residues could explain pyrenoid occurrence in green algae.
RbcS A phylogeny of RbcS was used to compare the protein sequence and CCM distribution across the green algae and positive selection in RbcS was estimated. For six streptophyte algae, Rubisco catalytic properties, affinity for CO₂ uptake (K
0.5), carbon isotope discrimination (δ13C) and pyrenoid morphology were compared.
• The length of the βA–βB loop in RbcS provided a phylogenetic marker discriminating chlorophyte from streptophyte green algae. Rubisco kinetic properties in streptophyte algae have responded to the extent of inducible CCM activity, as indicated by changes in inorganic carbon uptake affinity, δ13C and pyrenoid ultrastructure between high and low CO₂ conditions for growth.
• We conclude that the Rubisco catalytic properties found in streptophyte algae have coevolved and reflect the strength of any CCM or degree of pyrenoid leakiness, and limitations to inorganic carbon in the aquatic habitat, whereas Rubisco in extant land plants reflects more recent selective pressures associated with improved diffusive supply of the terrestrial environment.
Journal Article
Familial CCM Genes Might Not Be Main Drivers for Pathogenesis of Sporadic CCMs-Genetic Similarity between Cancers and Vascular Malformations
2023
Cerebral cavernous malformations (CCMs) are abnormally dilated intracranial capillaries that form cerebrovascular lesions with a high risk of hemorrhagic stroke. Recently, several somatic “activating” gain-of-function (GOF) point mutations in PIK3CA (phosphatidylinositol-4, 5-bisphosphate 3-kinase catalytic subunit p110α) were discovered as a dominant mutation in the lesions of sporadic forms of cerebral cavernous malformation (sCCM), raising the possibility that CCMs, like other types of vascular malformations, fall in the PIK3CA-related overgrowth spectrum (PROS). However, this possibility has been challenged with different interpretations. In this review, we will continue our efforts to expound the phenomenon of the coexistence of gain-of-function (GOF) point mutations in the PIK3CA gene and loss-of-function (LOF) mutations in CCM genes in the CCM lesions of sCCM and try to delineate the relationship between mutagenic events with CCM lesions in a temporospatial manner. Since GOF PIK3CA point mutations have been well studied in reproductive cancers, especially breast cancer as a driver oncogene, we will perform a comparative meta-analysis for GOF PIK3CA point mutations in an attempt to demonstrate the genetic similarities shared by both cancers and vascular anomalies.
Journal Article
Advances in Understanding Carboxysome Assembly in Prochlorococcus and Synechococcus Implicate CsoS2 as a Critical Component
by
Heinhorst, Sabine
,
Cannon, Gordon
,
Dou, Zhicheng
in
assembly
,
BASIC BIOLOGICAL SCIENCES
,
carboxysome
2015
The marine Synechococcus and Prochlorococcus are the numerically dominant cyanobacteria in the ocean and important in global carbon fixation. They have evolved a CO2-concentrating-mechanism, of which the central component is the carboxysome, a self-assembling proteinaceous organelle. Two types of carboxysome, α and β, encapsulating form IA and form IB d-ribulose-1,5-bisphosphate carboxylase/oxygenase, respectively, differ in gene organization and associated proteins. In contrast to the β-carboxysome, the assembly process of the α-carboxysome is enigmatic. Moreover, an absolutely conserved α-carboxysome protein, CsoS2, is of unknown function and has proven recalcitrant to crystallization. Here, we present studies on the CsoS2 protein in three model organisms and show that CsoS2 is vital for α-carboxysome biogenesis. The primary structure of CsoS2 appears tripartite, composed of an N-terminal, middle (M)-, and C-terminal region. Repetitive motifs can be identified in the N- and M-regions. Multiple lines of evidence suggest CsoS2 is highly flexible, possibly an intrinsically disordered protein. Based on our results from bioinformatic, biophysical, genetic and biochemical approaches, including peptide array scanning for protein-protein interactions, we propose a model for CsoS2 function and its spatial location in the α-carboxysome. Analogies between the pathway for β-carboxysome biogenesis and our model for α-carboxysome assembly are discussed.
Journal Article
Synopsis of Guidelines for the Clinical Management of Cerebral Cavernous Malformations: Consensus Recommendations Based on Systematic Literature Review by the Angioma Alliance Scientific Advisory Board Clinical Experts Panel
by
Kondziolka, Douglas
,
Whitehead, Kevin
,
A. Awad, Issam
in
Advisory Committees - standards
,
Ccm Care Guidelines
,
Central Nervous System Neoplasms - diagnosis
2017
Abstract
BACKGROUND: Despite many publications about cerebral cavernous malformations (CCMs), controversy remains regarding diagnostic and management strategies.
OBJECTIVE: To develop guidelines for CCM management.
METHODS: The Angioma Alliance (www.angioma.org), the patient support group in the United States advocating on behalf of patients and research in CCM, convened a multidisciplinary writing group comprising expert CCM clinicians to help summarize the existing literature related to the clinical care of CCM, focusing on 5 topics: (1) epidemiology and natural history, (2) genetic testing and counseling, (3) diagnostic criteria and radiology standards, (4) neurosurgical considerations, and (5) neurological considerations. The group reviewed literature, rated evidence, developed recommendations, and established consensus, controversies, and knowledge gaps according to a prespecified protocol.
RESULTS: Of 1270 publications published between January 1, 1983 and September 31, 2014, we selected 98 based on methodological criteria, and identified 38 additional recent or relevant publications. Topic authors used these publications to summarize current knowledge and arrive at 23 consensus management recommendations, which we rated by class (size of effect) and level (estimate of certainty) according to the American Heart Association/American Stroke Association criteria. No recommendation was level A (because of the absence of randomized controlled trials), 11 (48%) were level B, and 12 (52%) were level C. Recommendations were class I in 8 (35%), class II in 10 (43%), and class III in 5 (22%).
CONCLUSION: Current evidence supports recommendations for the management of CCM, but their generally low levels and classes mandate further research to better inform clinical practice and update these recommendations. The complete recommendations document, including the criteria for selecting reference citations, a more detailed justification of the respective recommendations, and a summary of controversies and knowledge gaps, was similarly peer reviewed and is available on line www.angioma.org/CCMGuidelines.
Journal Article
A visual meaningful encryption and hiding algorithm for multiple images
2024
To protect the privacy of multiple images simultaneously in the digital information era, this paper proposes a novel multi-image encryption and hiding algorithm (MiEHA) with the help of a new three-dimensional coupled chaotic model (3D-CCM), cross-plane confusion, diffusion and a three-dimensional discrete cosine transform (3D-DCT). First, to address security concerns arising from the limited performance of the current chaotic system, a new 3D-CCM is presented with a designed three-dimensional coupled map using Logistic map and Iterative chaotic map (3D-LICM). In addition, a novel key acquisition model is also developed to generate pseudo-random keystream. Next, the secret plain images are reorganized into three matrices of the same size together with the keystream. Then, the proposed algorithm implements cross-plane confusion, 3D Zigzag confusion-diffusion and cross-plane diffusion to achieve encryption for the former three matrices, resulting in a cipher image. Finally, execute a 3D-DCT transformation on a color carrier image, followed by an embedding operation of the cipher image into DCT coefficients, resulting in a carrier image containing secrets, i.e., visually meaningful cipher image. Fortunately, the proposed multi-image encryption can address the issue of requiring multiple rounds of encryption to different images. Different from noise-like cipher image, the proposed MiEHA has a better capability of encrypting and hiding secret images, with a high visual effect for carrier image before and after being embedded.
Journal Article
The Effectiveness of Peer Group Support Model Based on Chronic Care Model on Antiretroviral Compliance, Increasing Immunity (CD4, Viral Load, Opportunistic Infections), and Quality of Life of People with HIV (PLHIV)
2024
Introduction: The role of peer groups is very important in the treatment process for HIV/AIDS patients which determines the health condition and quality of life of HIV/AIDS patients, however, peer group support has not been integrated with health services. Aim: This study aims to analyze the effectiveness of peer group support based on the chronic care model (CCM) on ARV treatment adherence, level of immunity, and quality of life for HIV/AIDS patients. Method: This research used a quasi-experimental design (pre-post test with control group design). The research population was patients with HIV/AIDS with a sample of 30 people in each control and intervention group. Data was collected using questionnaires and blood samples from PLHIV, then analyzed using the Chi-Square test, Wilcoxon Signed Rank Test, and Mann Whitney. Results: Effect test results show that there is a significant influence of chronic care model-based peer group support on ARV treatment adherence (0.000), CD4 count (0.000), Viral Load (0.000), Opportunistic Infections (0.000) and quality of life (0.000) in HIV patients /AIDS. Conclusion: Peer group support based on the chronic care model affects ARV treatment adherence, level of immunity, and quality of life for HIV/AIDS patients. Peer group support based on the chronic care model increases adherence to ARV treatment, increases CD4 counts, increases viral load, reduces the incidence of opportunistic infections, and improves quality of life in HIV/AIDS patients.
Journal Article