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The Caribbean coral reef ecosystem has experienced a long history of deterioration due to various stressors. For instance, over-fishing of parrotfish – an important grazer of macroalgae that can prevent destructive overgrowth of macroalgae – has threatened reef ecosystems in recent decades and stimulated conservation efforts such as the formation of marine protected areas. Here we develop a mathematical model of coupled socio-ecological interactions between reef dynamics and conservation opinion dynamics to better understand how natural and human factors interact individually and in combination to determine coral reef cover. We find that the coupling opinion and reef systems generates complex dynamics that are difficult to anticipate without use of a model. For instance, instead of converging to a stable state of constant coral cover and conservationist opinion, the system can oscillate between low and high live coral cover as human opinion oscillates in a boom-bust cycle between complacency and concern. Out of various possible parameter manipulations, we also find that raising awareness of coral reef endangerment best avoids counter-productive nonlinear feedbacks and always increases and stabilizes live coral reef cover. In conclusion, an improved understanding of coupled opinion-reef dynamics under anthrogenic stressors is possible using coupled socio-ecological models, and such models should be further researched.

In many coastal areas, marine ecosystems have shifted into contrasting states having reduced ecosystem services (hereafter called degraded). Such degraded ecosystems may be slow to revert to their original state due to new ecological feedbacks that reinforce the degraded state. A better understanding of the way human actions influence the strength and direction of feedbacks, how different feedbacks could interact, and at what scales they operate, may be necessary in some cases for successful management of marine ecosystems. Here we synthesize interactions of critical feedbacks of the degraded states from six globally distinct biomes: coral reefs, kelp forests, seagrass beds, shallow soft sediments, oyster reefs, and coastal pelagic food webs. We explore to what extent current management captures these feedbacks and propose strategies for how and when (that is, windows of opportunity) to influence feedbacks in ways to break the resilience of the degraded ecosystem states. We conclude by proposing some challenges for future research that could improve our understanding of these issues and emphasize that management of degraded marine states will require a broad social—ecological approach to succeed.

Reef restoration activities have proliferated in response to the need to mitigate coral declines and recover lost reef structure, function, and ecosystem services. Here, we describe the recent shift from costly and complex engineering solutions to recover degraded reef structure to more economical and efficient ecological approaches that focus on recovering the living components of reef communities. We review the adoption and expansion of the coral gardening framework in the Caribbean and Western Atlantic where practitioners now grow and outplant 10,000’s of corals onto degraded reefs each year. We detail the steps for establishing a gardening program as well as long-term goals and direct and indirect benefits of this approach in our region. With a strong scientific basis, coral gardening activities now contribute significantly to reef and species recovery, provide important scientific, education, and outreach opportunities, and offer alternate livelihoods to local stakeholders. While challenges still remain, the transition from engineering to ecological solutions for reef degradation has opened the field of coral reef restoration to a wider audience poised to contribute to reef conservation and recovery in regions where coral losses and recruitment bottlenecks hinder natural recovery.

Coral reef ecosystems are at the forefront of biodiversity loss and climate change-mediated transformations. This is expected to have profound consequences for the functioning of these ecosystems. However, assessments of ecosystem function on reefs are often spatially limited, within biogeographic realms, or rely on presumed proxies such as traits. To address these shortcomings and assess the effects of biogeography and fish presence on the critical ecosystem function of macroalgal removal, we used assays of six algal genera across three reef habitats in two biogeographically distinct locations: Little Cayman in the Caribbean and Lizard Island on the Great Barrier Reef (GBR). Patterns of fish feeding and realised ecosystem function were strikingly similar between the two geographic locations, despite a threefold difference in the local diversity of nominally herbivorous fishes, a 2.4-fold difference in the diversity of fishes feeding and differences in the biogeographic history of the two locations. In both regions, a single species dominated the function: a surgeonfish, Naso unicornis, at the GBR location and, surprisingly, a triggerfish, Melichthys niger, at the Caribbean location. Both species, especially M. niger, were relatively rare, compared to other nominally herbivorous fishes, in censuses covering more than 14,000 m2 at each location. Our study provides novel insights into the critical function of macroalgal removal in hyperdiverse coral reef ecosystems, highlighting: (a) that function can transcend biogeographic, taxonomic and historical constraints; and (b) shortcomings in our assumptions regarding fish presence and realised ecosystem function on coral reefs.

Stony coral tissue loss disease (SCTLD) is destructive and poses a significant threat to Caribbean coral reef ecosystems. Characterized by the acute loss of coral tissue, SCTLD has impacted over 22 stony coral species across the Caribbean region, leading to visible declines in reef health. Based on the duration, lethality, host range, and spread of this disease, SCTLD is considered the most devastating coral disease outbreak ever recorded. Researchers are actively investigating the cause and transmission of SCTLD, but the exact mechanisms, triggers, and etiological agent(s) remain elusive. If left unchecked, SCTLD could have profound implications for the health and resilience of coral reefs worldwide. To summarize what is known about this disease and identify potential knowledge gaps, this review provides a holistic overview of SCTLD research, including species susceptibility, disease transmission, ecological impacts, etiology, diagnostic tools, host defense mechanisms, and treatments. Additionally, future research avenues are highlighted, which are also relevant for other coral diseases. As SCTLD continues to spread, collaborative efforts are necessary to develop effective strategies for mitigating its impacts on critical coral reef ecosystems. These collaborative efforts need to include researchers from diverse backgrounds and underrepresented groups to provide additional perspectives for a disease that requires creative and urgent solutions.

The arrival of large masses of drifting Sargassum since 2011 has caused changes in the natural dynamics of Caribbean coastal ecosystems. In the summer of 2015, unprecedented and massive mats of S. fluitans and S. natans have been observed throughout the Mexican Caribbean including exceptional accumulations ashore. This study uses stable isotopes to assess the impact of Sargassum blooms on the trophic dynamics of the Diadema antillarum sea urchin, a keystone herbivore on many Caribbean reefs. Bayesian models were used to estimate the variations in the relative proportions of carbon and nitrogen of assimilated algal resources. At three lagoon reef sites, the niche breadth of D. antillarum was analysed and compared under massive influx of drifting Sargassum spp. vs. no influx of Sargassum blooms. The effects of the leachates generated by the decomposition of Sargassum led to hypoxic conditions on these reefs and reduced the taxonomic diversity of macroalgal food sources available to D. antillarum . Our trophic data support the hypothesis that processes of assimilation of carbon and nitrogen were modified under Sargassum effect. Isotopic signatures of macroalgae associated with the reef sites exhibited significantly lower values of δ 15 N altering the natural herbivory of D . antillarum . The Stable Isotopes Analysis in R (SIAR) indicated that, under the influence of Sargassum blooms, certain algal resources ( Dictyota , Halimeda and Udotea ) were more assimilated due to a reduction in available algal resources. Despite being an abundant available resource, pelagic Sargassum was a negligible contributor to sea urchin diet. The Stable Isotope Bayesian Ellipses in R (SIBER) analysis displayed differences between sites, and suggests a reduction in trophic niche breadth, particularly in a protected reef lagoon. Our findings reveal that Sargassum blooms caused changes in trophic characteristics of D. antillarum with a negative impact by hypoxic conditions. These dynamics, coupled with the increase in organic matter in an oligotrophic system could lead to reduce coral reef ecosystem function.

Coral reefs are among the world's most endangered ecosystems. Coral mortality can result from ocean warming or other climate-related events such as coral bleaching and intense hurricanes. While resilient coral reefs can recover from these impacts as has been documented in coral reefs throughout the tropical Indo-Pacific, no similar reef-wide recovery has ever been reported for the Caribbean. Climate change-related coral mortality is unavoidable, but local management actions can improve conditions for regrowth and for the establishment of juvenile corals thereby enhancing the recovery resilience of these ecosystems. Previous research has determined that coral reefs with sufficient herbivory limit macroalgae and improve conditions for coral recruitment and regrowth. Management that reduces algal abundance increases the recovery potential for both juvenile and adult corals on reefs. Every other year on the island of Bonaire, Dutch Caribbean, we quantified patterns of distribution and abundance of reef fish, coral, algae, and juvenile corals along replicate fixed transects at 10 m depth at multiple sites from 2003 to 2017. Beginning with our first exploratory study in 2002 until 2007 coral was abundant (45% cover) and macroalgae were rare (6% cover). Consecutive disturbances, beginning with Hurricane Omar in October 2008 and a coral bleaching event in October 2010, resulted in a 22% decline in coral cover and a sharp threefold increase in macroalgal cover to 18%. Juvenile coral densities declined to about half of their previous abundance. Herbivorous parrotfishes had been declining in abundance but stabilized around 2010, the year fish traps were phased out and fishing for parrotfish was banned. The average parrotfish biomass from 2010 to 2017 was more than twice that reported for coral reefs of the Eastern Caribbean. During this same period, macroalgae declined and both juvenile coral density and total adult coral cover returned to pre-hurricane and bleaching levels. To our knowledge, this is the first example of a resilient Caribbean coral reef ecosystem that fully recovered from severe climate-related mortality events.

Subject to hurricane disturbance for millennia, natural ecosystems of Puerto Rico exhibit clear patterns of resistance (e.g., many tree species have little immediate storm‐related mortality) and resilience (e.g., leaf litterfall and stream chemistry returned to pre‐hurricane levels in as little as five years). Contemporaneous studies of near‐shore areas also suggested no long‐term impacts of hurricanes; however, anthropogenic effects (coral bleaching, sedimentation) dominate the long‐term condition of marine systems in Puerto Rico, many of which have slowly evolved into novel ecosystems. A key characteristic of novel marine ecosystems is their long‐term loss of benefits and resilience, coupled to declining biodiversity and loss of structural or functional redundancy, signaling increased vulnerability to subsequent hurricanes. Human systems are also strongly affected by cyclonic storms, as evidenced by the recent impacts of Hurricanes Irma and Maria in the Caribbean. The lack of short‐term recovery from disturbance by coral reef ecosystems, coupled with an increasing recurrence of anthropogenic impacts, increasing hurricane frequency or severity, and sea‐level rise, may have irreversible long‐term socioeconomic consequences for coastal social–ecological systems and for community livelihoods. A comprehensive social–ecological understanding of hurricane effects in Puerto Rico is lacking in part because hurricane effects on human populations are not comprehensively followed. Although some studies suggest a path forward, finding effective methods to link measurements of storm intensity to the diverse components of tropical social–ecological systems remains a challenge.

The importance of animals for mediating ecosystem processes has long been recognized by ecologists. Traditionally, consumer-mediated dynamics have been considered through consumptive pathways such as predation and herbivory. Yet, consumers also play critical roles in mediating “bottom-up” pathways associated with nutrient dynamics. Foundational research demonstrated the importance of these dynamics in terrestrial, freshwater, and pelagic marine ecosystems, and introduced novel perspectives on the role of animals such as wilde-beest, lacustrine fishes, and zooplankton, respectively, for providing an important source of nutrients that limit primary production. This research inspired a substantial body of research on the importance of consumer-mediated nutrient dynamics for ecosystem function. Despite this, only recently have ecologists begun to extend this line of thinking toward coastal marine ecosystems. The data presented herein is a comprehensive study of consumer nutrient dynamics from invertebrates and fishes that live in subtropical and tropical Caribbean coastal marine waters, including mangroves, seagrass beds, and coral reefs. This data set represents the largest, to my knowledge, published nutrient stoichiometry data set from a single system, including estimates of excretion rates (n = 900 individuals total; n = 667 individual fish, size range 0.14–2,597 g [2–107 cm]; n = 233 invertebrates, size range 0.04–487 g), and somatic nutrient content analyses (n = 658 individuals total, n = 494 vertebrates, n = 164 invertebrates). These data also include δ13C and δ15N stable isotopes of whole body, body mass (wet mass), taxonomic identification to class-level, and functional group classification. These data have been used to test basic ecological theory, to scale individual-level processes to coral reef, mangrove, and seagrass ecosystems, and to understand the role of human impacts for mitigating consumer-mediated nutrient dynamics. While these findings have helped improve our understanding of nutrient dynamics in tropical coastal ecosystems, these data offer a wealth of additional promise for advancing ecological theory and applied science in tropical marine ecosystems and beyond. Users are free to use and analyze the data. Attribution should be given to this presentation of the data.

Despite general declines in coral reef ecosystems in the tropical western Atlantic, some reefs, including mesophotic reefs (30–150 m), are hypothesized to function as coral refugia due to their relative isolation from anthropogenic stressors. Understanding the connectivity dynamics among these putative refugia and more degraded reefs is critical to develop effective management strategies that promote coral metapopulation persistence and recovery. This study presents a geographically broad assessment of shallow (<30 m) and mesophotic (>30 m) connectivity dynamics of the depth‐generalist coral species Montastraea cavernosa. Over 750 coral genets were collected across the Northwest and Southern Gulf of Mexico, Florida, Cuba, and Belize, and ~5000 SNP loci were generated to quantify high‐resolution genetic structure and connectivity among these populations. Generally, shallow and mesophotic populations demonstrated higher connectivity to distant populations within the same depth zone than to adjacent populations across depth zones. However, exceptions to this pattern include the Northwest Gulf of Mexico and the Florida Keys which exhibited relatively high vertical genetic connectivity. Furthermore, estimates of recent gene flow emphasize that mesophotic M. cavernosa populations are not significant sources for their local shallow counterparts, except for the Northwest Gulf of Mexico populations. Location‐based differences in vertical connectivity are likely a result of diverse oceanographic and environmental conditions that may drive variation in gene flow and depth‐dependent selection. These results highlight the need to evaluate connectivity dynamics and refugia potential of mesophotic coral species on a population‐by‐population basis and to identify stepping‐stone populations that warrant incorporation in future international management approaches. We assessed the population genetic connectivity of shallow and mesophotic Montastraea cavernosa corals using a 2bRAD sequencing approach across the Gulf of Mexico and western Caribbean. We found that there was generally significant genetic structuring between shallow and mesophotic depth zones and between the Gulf of Mexico and western Caribbean populations. While the deep reef refugia potential is limited to certain reefs, horizontal connectivity across international boundaries is fairly high in some cases.