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Ecological traps occur when species choose to settle in lower‐quality habitats, even if this reduces their survival or productivity. This happens in situations of drastic environmental changes, resulting from anthropogenic pressures. In long term, this could mean the extinction of the species. We investigated the dynamics of occurrence and distribution of three canid species (Atelocynus microtis, Cerdocyon thous, and Spheotos venaticus) considering human threats to their habitats in the Amazon Rainforest. We analyzed the environmental thresholds for the occurrence of these species and related to the future projections of climatic niches for each one. All three species will be negatively affected by climate change in the future, with losses of up to 91% of the suitable area of occurrence in the Brazilian Amazon. A. microtis appear to be more forest‐dependent and must rely on the goodwill of decision‐makers to be maintained in the future. For C. thous and S. venaticus, climatic variables and those associated with anthropogenic disturbances that modulate their niches today may not act the same way in the future. Even though C. thous is least dependent on the Amazon Forest; this species may be affected in the future due to the ecological traps. S. venaticus, can also undergo the same process, but perhaps more drastically due to the lower ecological plasticity of this species compared to C. thous. Our results suggest that the ecological traps may put these two species at risk in the future. Using the canid species as a model, we had the opportunity to investigate these ecological effects that can affect a large part of the Amazonian fauna in the current scenario. Considering the high degree of environmental degradation and deforestation in the Amazon Rainforest, the theory of ecological traps must be discussed at the same level as the habitat loss, considering the strategies for preserving the Amazon biodiversity. Considering the evolutionary history of the species and the rapid changes in land use in the Amazon Forest, we suggest that anthropogenic environments may provide false clues for species adaptation, which could lead to an ecological trap in the future. For at least two of the three canid species studied, climatic variables and those associated with anthropogenic disturbances that modulate their niches today may not act in the same way in the future. Thus, rapid environmental changes can act as ecological traps for these species and, in the future, they may no longer survive in most areas considered suitable for them today. Using canid species as a model, we investigated ecological effects that could affect a large part of the Amazonian fauna in the current and future scenario.

Biodiversity inventories contain important information about species richness, community structure, and composition, and are the first step in developing any conservation and mitigation strategies. The Atlantic Forest of South America is home to around 334 species of small‐, medium‐, and large‐sized mammals, and is currently restricted to less than 12% of its original cover. Here, we present the ATLANTIC MAMMALS, an open data set on information on medium‐ and large‐sized mammal assemblages in the Atlantic Forest of Brazil, Paraguay, and Argentina. A total of 129 studies were compiled, including published and in press peer‐reviewed papers, book chapters, theses and unpublished data. We mapped 244 assemblages, eight orders, 63 genera, and 94 species (24 of which are classified as threatened by the IUCN Red List) distributed in 128 protected and 116 unprotected areas. Species richness of the mammalian assemblages varied from 1 to 39 species (mean 15). The most recorded species in the entire biome was Dasypus novemcinctus, followed by Cerdocyon thous and Procyon cancrivorous. These data can be useful in support of macroecological studies and conservation planning strategies. Please cite this data paper when the data are used in publications. We also request that researchers and teachers inform us of how they are using the data.

Habitat fragmentation reduces biodiversity and affects ecological processes that are fundamental for maintaining ecosystem services. We investigated how landscape structure—percent forest cover, patch density, percent cover by edge, perimeter-area ratio, and spatial heterogeneity—affects the diversity of mammalian carnivores at multiple extents within 22 Atlantic Forest landscapes. We hypothesized that 1) species richness of carnivores is positively related to forest cover; and 2) the occurrence of species will vary according to its sensitivity to forest loss and its preference for forest or open areas. Species richness, composition, and occurrence of mammalian carnivores were correlated with several landscape structure metrics. Due to a high correlation among the metrics, we adopted forest cover as the principal predictor variable. We compared a forest cover model to a null model using Akaike Information Criterion (AICc), and evaluated other fragmentation metrics using a redundancy analysis. Carnivore species richness was positively related to forest cover and negatively associated with other fragmentation metrics. However, the responses to landscape structure differed among species, possibly due to their differences in habitat use. Landscape configuration is an important factor influencing carnivore species composition. Forest cover can explain some, but not all, carnivore species occurrence. Our results reinforce the protection of forests as fundamental to the conservation of carnivore species and the ecological processes in which they participate.

Mortality from collision with vehicles is the most visible impact of road traffic on wildlife. Mortality due to roads (hereafter road-kill) can affect the dynamic of populations of many species and can, therefore, increase the risk of local decline or extinction. This is especially true in Brazil, where plans for road network upgrading and expansion overlaps biodiversity hotspot areas, which are of high importance for global conservation. Researchers, conservationists and road planners face the challenge to define a national strategy for road mitigation and wildlife conservation. The main goal of this dataset is a compilation of geo-referenced road-kill data from published and unpublished road surveys. This is the first Data Paper in the BRAZIL series (see ATLANTIC, NEOTROPICAL, and BRAZIL collections of Data Papers published in Ecology), which aims make public road-kill data for species in the Brazilian Regions. The dataset encompasses road-kill records from 45 personal communications and 26 studies published in peer-reviewed journals, theses and reports. The road-kill dataset comprises 21,512 records, 83% of which are identified to the species level (n = 450 species). The dataset includes records of 31 amphibian species, 90 reptile species, 229 bird species, and 99 mammal species. One species is classified as Endangered, eight as Vulnerable and twelve as Near Threatened. The species with the highest number of records are: Didelphis albiventris (n = 1,549), Volatinia jacarina (n = 1,238), Cerdocyon thous (n = 1,135), Helicops infrataeniatus (n = 802), and Rhinella icterica (n = 692). Most of the records came from southern Brazil. However, observations of the road-kill incidence for non-Least Concern species are more spread across the country. This dataset can be used to identify which taxa seems to be vulnerable to traffic, analyze temporal and spatial patterns of road-kill at local, regional and national scales and also used to understand the effects of road-kill on population persistence. It may also contribute to studies that aims to understand the influence of landscape and environmental influences on road-kills, improve our knowledge on road-related strategies on biodiversity conservation and be used as complementary information on large-scale and macroecological studies. No copyright or proprietary restrictions are associated with the use of this data set other than citation of this Data Paper.

Our understanding of mammal ecology has always been hindered by the difficulties of observing species in closed tropical forests. Camera trapping has become a major advance for monitoring terrestrial mammals in biodiversity rich ecosystems. Here we compiled one of the largest datasets of inventories of terrestrial mammal communities for the Neotropical region based on camera trapping studies. The dataset comprises 170 surveys of medium to large terrestrial mammals using camera traps conducted in 144 areas by 74 studies, covering six vegetation types of tropical and subtropical Atlantic Forest of South America (Brazil and Argentina), and present data on species composition and richness. The complete dataset comprises 53,438 independent records of 83 species of mammals, includes 10 species of marsupials, 15 rodents, 20 carnivores, eight ungulates and six armadillos. Species richness averaged 13 species (±6.07 SD) per site. Only six species occurred in more than 50% of the sites: the domestic dog Canis familiaris, crab-eating fox Cerdocyon thous, tayra Eira barbara, south American coati Nasua nasua, crab-eating raccoon Procyon cancrivorus and the nine-banded armadillo Dasypus novemcinctus. The information contained in this dataset can be used to understand macroecological patterns of biodiversity, community, and population structure, but also to evaluate the ecological consequences of fragmentation, defaunation, and trophic interactions.

Context Human activities are reducing the amount and quality of natural landscapes. Understanding how such changes affect the spatial and temporal ecology of mammal populations will enable us to foresee how communities will be structured in the Anthropocene. Objectives Here, we evaluated how the occupancy, intensity of use, and activity patterns of the mesopredator canid Cerdocyon thous are affected by topographic variation, habitat amount, fragmentation and chronic anthropogenic disturbances. Methods Camera trapping data were obtained between May and September 2014 in 179 sampling points within ten priority areas for conservation in a seasonally dry tropical forest (Caatinga) in Brazil, totaling an effort of 6,701 camera.days. We use occupancy models for analyzed occupancy, generalized linear models (GLM) for the intensity of use and kernel density curve for activity pattern. Results Cerdoyon thous benefited from human disturbance, showing greater occupancy and intensity of use near anthropogenic habitats, fragmentation, human density and cattle density. Moreover, temporal analyses showed that it modulates its daily activity according to habitat amount, human density, cattle density and altitude. However, C. thous tends to avoid areas with excess of fire, logging and infrastructures. Conclusions These results allow us to understand the mechanisms that contribute to the dominance of generalist mesocarnivores in human-dominated environments.

Activity patterns reflect adaptations to local biological and physical conditions. We estimated the activity patterns of 3 mesocarnivore species in a semiarid environment in northeastern Brazil: the ocelot (Leopardus pardalis), crab-eating fox (Cerdocyon thous), and oncilla (Leopardus tigrinus). We compared the overlap of daily activity among these species and to apex predators. We also estimated nighttime activity of these mesocarnivores during 2 years and compared activity peaks with those of apex predators and potential prey. All 3 mesocarnivores were nocturnal, with ocelots having only 1 record during daytime. Coefficients of overlap with larger predators were high (Δ1 > 0.7) for all pairwise comparisons, since all species were very nocturnal. Nighttime-only activity comparisons (Kolmogorov–Smirnov tests) showed that activity of oncillas differed from that of both larger mesocarnivores and jaguar activity, suggesting temporal segregation. Contrary to our expectations, rodent activity was dissimilar from that of ocelots and crab-eating foxes, but activity of rodents and oncillas was relatively synchronous. Activity of both cat species seems limited to the cooler nighttime, and nocturnal behavior of oncillas more likely reflects activity of potential prey rather than regulation by intraguild predators. Future studies in arid regions should consider climatic factors when estimating activity patterns.

Anaplasmataceae agents are obligatory intracellular Gram-negative α-proteobacteria that are transmitted mostly by arthropod vectors. Although mammals of the Superorder Xenarthra (sloths, anteaters, and armadillos) have been implicated as reservoirs for several zoonotic agents, only few studies have sought to detect Anaplasmataceae agents in this group of mammals. This study aimed to investigate the occurrence and genetic diversity of Anaplasma spp. and Ehrlichia spp. in blood and spleen samples of free-living Xenarthra from four different states in Brazil (São Paulo, Mato Grosso do Sul, Rondônia, and Pará). Nested and conventional PCR screening assays were performed to detect the rrs and dsb genes of Anaplasma spp. and Ehrlichia spp., respectively. The assays were positive in 27.57% (91/330) of the Anaplasma spp. and 24.54% (81/330) of the Ehrlichia spp. Of the 91 positive Anaplasma spp. samples, 56.04% were positive in a conventional PCR assay targeting the 23S–5S intergenic region. Phylogenetic and distance analyses based on the rrs gene allocated Anaplasma sequences from sloths captured in Rondônia and Pará states in a single clade, which was closely related to the A. marginale , A. ovis, and A. capra clades. The sequences detected in southern anteaters from São Paulo were allocated in a clade closely related to sequences of Anaplasma spp. detected in Nasua nasua , Leopardus pardalis , and Cerdocyon thous in Brazil. These sequences were positioned close to A. odocoilei sequences. Genotype analysis corroborated previous findings and demonstrated the circulation of two distinct Anaplasma genotypes in animals from north and southeast Brazil. The first genotype was new. The second was previously detected in N. nasua in Mato Grosso do Sul state. The intergenic region analyses also demonstrated two distinct genotypes of Anaplasma . The sequences detected in Xenarthra from Pará and Rondônia states were closely related to those in A. marginale , A. ovis, and A. capra . Anaplasma spp. sequences detected in Xenarthra from São Paulo and were allocated close to those in A. phagocytophilum . The analyses based on the dsb gene grouped the Ehrlichia spp. sequences with sequences of E. canis (São Paulo, Mato Grosso do Sul, and Pará) and E. minasensis (Rondônia and Pará). The data indicate the occurrence of E. canis and E. minasensis and two possible new Candidatus species of Anaplasma spp. in free-living mammals of the Superorder Xenarthra in Brazil.

Zoonotic visceral leishmaniasis (ZVL) caused by Leishmania infantum is an important disease of humans and dogs. Here we review aspects of the transmission and control of ZVL. Whilst there is clear evidence that ZVL is maintained by sandfly transmission, transmission may also occur by non-sandfly routes, such as congenital and sexual transmission. Dogs are the only confirmed primary reservoir of infection. Meta-analysis of dog studies confirms that infectiousness is higher in symptomatic infection; infectiousness is also higher in European than South American studies. A high prevalence of infection has been reported from an increasing number of domestic and wild mammals; updated host ranges are provided. The crab-eating fox Cerdocyon thous, opossums Didelphis spp., domestic cat Felis cattus, black rat Rattus rattus and humans can infect sandflies, but confirmation of these hosts as primary or secondary reservoirs requires further xenodiagnosis studies at the population level. Thus the putative sylvatic reservoir(s) of ZVL remains unknown. Review of intervention studies examining the effectiveness of current control methods highlights the lack of randomized controlled trials of both dog culling and residual insecticide spraying. Topical insecticides (deltamethrin-impregnated collars and pour-ons) have been shown to provide a high level of individual protection to treated dogs, but further community-level studies are needed.

We investigated the home range size, habitat selection, as well as the spatial and activity overlap, of four mid-sized carnivore species in the Central Pantanal, Mato Grosso do Sul, Brazil. From December 2005 to September 2008, seven crab-eating foxes Cerdocyon thous, seven brown-nosed coatis Nasua nasua, and six ocelots Leopardus pardalis were radio-collared and monitored. Camera trap data on these species were also collected for the crab-eating raccoon Procyon cancrivorus. We hypothesized that there would be large niche differentiation in preferred habitat-type or active period between generalist species with similar diet, and higher similarity in habitat-type or activity time between the generalist species (crab-eating foxes and coatis) and the more specialized ocelot. Individual home ranges were estimated using the utilization distribution index (UD- 95% fixed Kernel). With data obtained from radio-collared individuals, we evaluated habitat selection using compositional analysis. Median home range size of ocelots was 8 km2. The proportion of habitats within the home ranges of ocelots did not differ from the overall habitat proportion in the study area, but ocelots preferentially used forest within their home range. The median home range size of crab-eating foxes was 1.4 km2. Foxes showed second-order habitat selection and selected savanna over shrub-savanna vegetation. The median home range size for coati was 1.5 km2. Coati home ranges were located randomly in the study area. However, within their home range, coatis occurred more frequently in savanna than in other vegetation types. Among the four species, the overlap in activity period was the highest (87%) between ocelots and raccoons, with the least overlap occurring between the ocelot and coati (25%). We suggest that temporal segregation of carnivores was more important than spatial segregation, notably between the generalist coati, crab-eating fox and crab-eating raccoon.