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To the Editor: Pellerin et al. (Jan. 12 issue) 1 reported a dominant FGF14 GAA repeat expansion in persons with late-onset cerebellar ataxia. They also identified persons who were homozygous or compound heterozygous for expansions of at least 250 GAA repeats ([GAA] ≥250 ), a finding consistent with the possibility of codominance at this locus (with both alleles expressed simultaneously). Here, we report two siblings with early-onset cerebellar ataxia from a consanguineous Chinese family who carried biallelic FGF14 GAA repeat expansions. One of the siblings initially had episodic gait imbalance at 21 years of age; progressive dysarthria, postural tremor, spasticity, and downbeat nystagmus . . .

Loss of plant diversity with increased anthropogenic nitrogen (N) deposition in grasslands has occurred globally. In most cases, competitive exclusion driven by preemption of light or space is invoked as a key mechanism. Here, we provide evidence from a 9‐yr N‐addition experiment for an alternative mechanism: differential sensitivity of forbs and grasses to increased soil manganese (Mn) levels. In Inner Mongolia steppes, increasing the N supply shifted plant community composition from grass–forb codominance (primarily Stipa krylovii and Artemisia frigida, respectively) to exclusive dominance by grass, with associated declines in overall species richness. Reduced abundance of forbs was linked to soil acidification that increased mobilization of soil Mn, with a 10‐fold greater accumulation of Mn in forbs than in grasses. The enhanced accumulation of Mn in forbs was correlated with reduced photosynthetic rates and growth, and is consistent with the loss of forb species. Differential accumulation of Mn between forbs and grasses can be linked to fundamental differences between dicots and monocots in the biochemical pathways regulating metal transport. These findings provide a mechanistic explanation for N‐induced species loss in temperate grasslands by linking metal mobilization in soil to differential metal acquisition and impacts on key functional groups in these ecosystems.

Respiratory syncytial virus (RSV) bronchiolitis is not only the leading cause of hospitalization in U.S. infants, but also a major risk factor for asthma development. While emerging evidence suggests clinical heterogeneity within RSV bronchiolitis, little is known about its biologically-distinct endotypes. Here, we integrated clinical, virus, airway microbiome (species-level), transcriptome, and metabolome data of 221 infants hospitalized with RSV bronchiolitis in a multicentre prospective cohort study. We identified four biologically- and clinically-meaningful endotypes: A) clinical classic microbiome M. nonliquefaciens inflammation IFN-intermediate , B) clinical atopic microbiome S. pneumoniae / M. catarrhalis inflammation IFN-high , C) clinical severe microbiome mixed inflammation IFN-low , and D) clinical non-atopic microbiome M.catarrhalis inflammation IL-6 . Particularly, compared with endotype A infants, endotype B infants—who are characterized by a high proportion of IgE sensitization and rhinovirus coinfection, S. pneumoniae/M. catarrhalis codominance, and high IFN-α and -γ response—had a significantly higher risk for developing asthma (9% vs. 38%; OR, 6.00: 95%CI, 2.08–21.9; P = 0.002). Our findings provide an evidence base for the early identification of high-risk children during a critical period of airway development. Respiratory syncytial virus (RSV) bronchiolitis during infancy is a major risk factor for asthma development. Here, Raita et al. integrate clinical data with airway microbiome, transcriptome, and metabolome data and identity four endotypes with differential risks for developing asthma.

Aim: Metacommunity assembly mechanisms have been traditionally considered stable through time. However, in highly dynamic systems with varying local environmental conditions and patch connectivity, communities are likely to experience temporal shifts in their assembly mechanisms. Here, we used a set of perennial (PR) and intermittent (IR) rivers to assess if assembly mechanisms vary seasonally in response to flow intermittence. Location: Mediterranean climate region (100,000 km2), Spain. Methods: We used a modelling approach to assess the relative effect of environmental sorting and dispersal-based processes on aquatic invertebrate metacommunities within and across river types at four distinct hydrological periods. We used local environmental variables to assess environmental sorting, and considered geographical, network and topographical distances as different dispersal surrogates. Linear mixed effect models accounting for the non-independence of pairwise distances were used to assess the relationships between community dissimilarity and distance matrices. Results: Assembly mechanisms were more temporally stable in PR than in IR. In PR, community dissimilarities were equally related to environmental and geographical distances suggesting codominance of species sorting and dispersal-based assembly mechanisms. In IR, environmental distance best explained community dissimilarities during the dry period when flow cessation imposes strong environmental sorting, whereas meta-community organization was much more stochastic during the rewetting period when high flows may randomly reorganize communities. Dispersal processes dominated assembly mechanisms between PR and IR during the rewetting period suggesting an increase in recolonization processes linking both river types following the dry period. Geographical and topographical distances best explained community variability, suggesting that overland dispersal dominates in river networks fragmented by drying events. Main conclusions: Aquatic invertebrate metacommunity assembly mechanisms vary seasonally in response to changes in hydrological conditions. The temporal dimension should be better incorporated into metacommunity studies in highly dynamic systems such as intermittent rivers.

Walter (Jahrb Wiss Bot 87:750—860, 1939) proposed a two-layer hypothesis, an equilibrium explanation for coexistence of savanna trees and grasses. This hypothesis relies on vertical niche partitioning and assumed that grasses are more water-use efficient than trees and use subsurface water while trees also have access to deeper water sources. Thus, in open savannas, grasses were predicted to predominate because of their water use efficiency and access to subsurface water. This hypothesis has been a prominent part of the savanna literature since first proposed. We review the literature on Walter's hypothesis and reconsider his original intentions. Walter intended this hypothesis to be restricted to dry savannas. In his opinion, mesic and humid savannas were controlled by biotic factors and disturbances. We surveyed the global savanna literature for records of vertical niche partitioning by grasses and trees. We find that, within the scope of Walter's original intentions, this hypothesis works remarkably well, and in some cases is appropriate for deserts as well as for dry temperate systems and even some mesic savannas.

In recent years, molecular markers have been utilized for a variety of applications including examination of genetic relationships between individuals, mapping of useful genes, construction of linkage maps, marker assisted selections and backcrosses, population genetics and phylogenetic studies. Among the available molecular markers, microsatellites or simple sequence repeats (SSRs) which are tandem repeats of one to six nucleotide long DNA motifs, have gained considerable importance in plant genetics and breeding owing to many desirable genetic attributes including hypervariability, multiallelic nature, codominant inheritance, reproducibility, relative abundance, extensive genome coverage including organellar genomes, chromosome specific location and amenability to automation and high throughput genotyping. High degree of allelic variation revealed by microsatellite markers results from variation in number of repeat-motifs at a locus caused by replication slippage and/or unequal crossing-over during meiosis. In spite of limited understanding of the functions of the SSR motifs within the plant genes, SSRs are being widely utilized in plant genome analysis. Microsatellites can be developed directly from genomic DNA libraries or from libraries enriched for specific microsatellites. Alternatively, microsatellites can also be found by searching public databases such as GenBank and EMBL or through cross-species transferability. At present, EST databases are an important source of candidate genes, as these can generate markers directly associated with a trait of interest and may be transferable in close relative genera. A large number of SSR based techniques have been developed and a quantum of literature has accumulated regarding the applicability of SSRs in plant genetics and genomics. In this review we discuss the recent developments (last 4-5 years) made in plant genetics using SSR markers.

Fifty-seven accessions of torch ginger (Etlingera elatior) collected from seven states in Peninsular Malaysia were evaluated for their molecular characteristics using ISSR and SSR markers to assess the pattern of genetic diversity and association among the characteristics. Diversity study through molecular characterization showed that high variability existed among the 57 torch ginger accessions. ISSR and SSR molecular markers revealed the presence of high genetic variability among the torch ginger accessions. The combination of different molecular markers offered reliable and convincing information about the genetic diversity of torch ginger germplasm. This study found that SSR marker was more informative compared to ISSR marker in determination of gene diversity, polymorphic information content (PIC), and heterozygosity in this population. SSR also revealed high ability in evaluating diversity levels, genetic structure, and relationships of torch ginger due to their codominance and rich allelic diversity. High level of genetic diversity discovered by SSR markers showed the effectiveness of this marker to detect the polymorphism in this germplasm collection.

The selection of grass mixtures with appropriate visual and functional parameters for sowing football fields is a key element in shaping the sports infrastructure, ensuring the spectacularity of a match and comfort for players. The aim of the research was to investigate the properties of lawn grass mixtures and their suitability for football pitches. The experiment was conducted at the Toya Golf & Country Club (51° 20′ E, 17° 07′ N), Wrocław, Poland, between 2007 and 2009. 12 grass mixtures were selected, mainly based on red fescue, Kentucky bluegrass, and perennial ryegrass. The assessment was carried out using a nine-point scale, according to the Plant Variety Office methodology for crops and turf grass. Six features of sports turf were studied: appearance, density, colour, leaf fineness, overwintering, and susceptibility to disease and they significantly varied, depending on the grass mixture and the year of research. Our study showed that mixtures based on the dominance of meadow grass were characterized by higher values of the general visual aspect, colour and slenderness of the leaf blade and these based on the dominance of perennial ryegrass and co-dominance of perennial ryegrass and meadow grass were the most useful in terms of wintering, resistance to diseases and sodding.

Aquatic ecosystems occasionally show ecological thresholds, defined as the point at which there is a sudden shift in production, trait or biomass or where changes in an environmental driver create nonlinear responses at the ecosystem level. Previous studies of lakes have mainly focused on how reduction in particularly phosphorus (P) concentrations helps to create a shift in lakes from a turbid to a clear state (re-oligotrophication), whereas the effect of nitrogen (N) reduction is less well studied. Here, by analysing a 28-year monthly monitoring dataset (from December 1991 to November 2019) from the subtropical, large eutrophic Lake Taihu, China, we identified a sudden shift in phytoplankton biomass and composition that coincided with a pronounced change in ecosystem functions, for example, resource use efficiency (RUE), during a period with reduction of the external nutrient loading. The changes were particularly strong in winter–spring where a sudden decrease in N concentrations was accompanied by a sudden increase in diatom biomass and phytoplankton RUE and a shift from green algae and flagellate co-dominance to dominance of diatoms. Structural equation modelling further indicated that ammonium reduction led directly to increases in winter–spring phytoplankton RUE and diatom biomass. Repeated fish stocking likely also contributed to the changes in biomass and RUE. Our study provides new insight into the ecological responses to N loading reduction and contributes to the understanding of lake responses to early re-oligotrophication, which was pronounced mainly in the colder seasons in subtropical Lake Taihu, similar to findings in the early phase of re-oligotrophication in numerous temperate lakes.

Cities are increasingly focused on expanding tree canopy cover as a means to improve the urban environment by, for example, reducing heat island effects, promoting better air quality, and protecting local habitat. The majority of efforts to expand canopy cover focus on planting street trees or on planting native tree species and removing nonnatives in natural areas through reforestation. Yet many urban canopy assessments conducted at the city-scale reveal co-dominance by nonnative trees, fueling debates about the value of urban forests and native-specific management targets. In contrast, assessments within cities at site or park scales find that some urban forest stands harbor predominantly native biodiversity. To resolve this apparent dichotomy in findings, about the extent to which urban forests are native dominated, between the city-scale canopy and site-level assessments, we measure forest structure and composition in 1,124 plots across 53 parks in New York City’s 2,497 ha of natural area forest. That is, we assess urban forests at the city-scale and deliberately omit sampling trees existing outside of forest stands but which are enumerated in citywide canopy assessments. We find that on average forest stand canopy is comprised of 82% native species in New York City forests, suggesting that conclusions that the urban canopy is co-dominated by nonnatives likely results from predominantly sampling street trees in prior city-scale assessments. However, native tree species’ proportion declines to 75% and 53% in the midstory and understory, respectively, suggesting potential threats to the future native dominance of urban forest canopies. Furthermore, we find that out of 57 unique forest types in New York City, the majority of stands (81%) are a native type. We find that stand structure in urban forest stands is more similar to rural forests in New York State than to stand structure reported for prior assessments of the urban canopy at the city scale. Our results suggest the need to measure urban forest stands apart from the entire urban canopy. Doing so will ensure that city-scale assessments return data that align with conservation policy and management strategies that focus on maintaining and growing native urban forests rather than individual trees.