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The relationships between soil biodiversity and ecosystem functions are an important yet poorly understood topic in microbial ecology. This study presents an exploratory effort to gain predictive understanding of the factors driving the relationships between microbial diversity and potential soil nutrient cycling in complex terrestrial ecosystems. Biodiversity is important for supporting ecosystem functioning. To evaluate the factors contributing to the strength of microbial diversity-function relationships in complex terrestrial ecosystems, we conducted a soil survey over different habitats, including an agricultural field, forest, wetland, grassland, and desert. Soil microbial multidiversity was estimated by the combination of bacterial and fungal diversity. Soil ecosystem functions were evaluated using a multinutrient cycling index (MNC) in relation to carbon, nitrate, phosphorus, and potassium cycling. Significant positive relationships between soil multidiversity and multinutrient cycling were observed in all habitats, except the grassland and desert. Specifically, community compositions showed stronger correlations with multinutrient cycling than α-diversity, indicating the crucial role of microbial community composition differences on soil nutrient cycling. Importantly, we revealed that changes in both the neutral processes (Sloan neutral modeling) and the proportion of negative bacterial-fungal associations were linked to the magnitude and direction of the diversity-MNC relationships. The habitats less governed by neutral processes and dominated by negative bacterial-fungal associations exhibited stronger negative microbial α -diversity–MNC relationships. Our findings suggested that the balance between positive and negative bacterial-fungal associations was connected to the link between soil biodiversity and ecosystem function in complex terrestrial ecosystems. This study elucidates the potential factors influencing diversity-function relationships, thereby enabling future studies to forecast the effects of belowground biodiversity on ecosystem function. IMPORTANCE The relationships between soil biodiversity and ecosystem functions are an important yet poorly understood topic in microbial ecology. This study presents an exploratory effort to gain predictive understanding of the factors driving the relationships between microbial diversity and potential soil nutrient cycling in complex terrestrial ecosystems. Our structural equation modeling and random forest analysis revealed that the balance between positive and negative bacterial-fungal associations was clearly linked to the strength of the relationships between soil microbial diversity and multiple nutrients cycling across different habitats. This study revealed the potential factors underpinning diversity-function relationships in terrestrial ecosystems and thus helps us to manage soil microbial communities for better provisioning of key ecosystem services.

Ecological disturbances are often hypothesized to alter community assembly processes that influence variation in community composition (β‐diversity). Disturbance can cause convergence in community composition (low β‐diversity) by increasing niche selection of disturbance‐tolerant species. Alternatively, disturbance can cause divergence in community composition (high β‐diversity) by increasing habitat filtering across environmental gradients. However, because disturbance may also influence β‐diversity through random sampling effects owing to changes in the number of individuals in local communities (community size) or abundances in the regional species pool, observed patterns of β‐diversity alone cannot be used to unambiguously discern the relative importance of community assembly mechanisms. We compared β‐diversity of woody plants and inferred assembly mechanisms among unburned forests and forests managed with prescribed fires in the Missouri Ozarks, USA. Using a null‐model approach, we compared how environmental gradients influenced β‐diversity after controlling for differences in local community size and regional species abundances between unburned and burned landscapes. Observed β‐diversity was higher in burned landscapes. However, this pattern disappeared or reversed after controlling for smaller community size in burned landscapes. β‐diversity was higher than expected by chance in both landscapes, indicating an important role for processes that create clumped species distributions. Moreover, fire appeared to decrease clumping of species at broader spatial scales, suggesting homogenization of community composition through niche selection of disturbance‐tolerant species. Environmental variables, however, explained similar amounts of variation in β‐diversity in both landscapes, suggesting that disturbance did not alter the relative importance of habitat filtering. Our results indicate that contingent responses of communities to fire reflect a combination of fire‐induced changes in local community size and scale‐dependent effects of fire on species clumping across landscapes. Synthesis. Although niche‐based mechanisms of community assembly are often invoked to explain changes in community composition following disturbance, our results suggest that these changes also arise through random sampling effects owing to the influence of disturbance on community size. Comparative studies of these processes across disturbed ecosystems will provide important insights into the ecological conditions that determine when disturbance alters the interplay of deterministic and stochastic processes in natural and human‐modified landscapes.

Summary Post‐dispersal seed predators contribute substantially to seed loss across many ecosystems. Most research has focused on understanding sources of variation in seed loss, without appreciating the implications of seed predation for plant coexistence, community assembly and broader community theory. Meanwhile, research aimed at understanding coexistence and community assembly processes in plant communities has focused on axes of dispersal and resource competition and the traits influencing these processes, without accounting for the role of generalist seed predators. We review the unique features of post‐dispersal seed predation and assess the implications of seed loss on three critical components of plant community organization – coexistence, community structure and plant invasions – pointing to both important gaps in theory and empirical knowledge. We highlight how understanding fundamental controls on plant recruitment is central to determining how seed predation affects plant recruitment and coexistence. We discuss how accounting for seed predator foraging strategies may shift trait‐based inferences of community assembly. Synthesis. We argue that seed predation by generalist consumers, which is pervasive in temperate communities, should be better incorporated into plant community theory. Experiments that specifically incorporate the presence and attributes of the seed predator community and that follow seed fate would fill important knowledge gaps. Particularly needed are studies focused on strengthening the connections between seed removal and plant establishment and linking selective and density‐dependent foraging strategies to plant traits. Advancing our understanding of the processes regulating plant coexistence and community assembly requires that future research not only acknowledge but also incorporate generalist consumers’ effects on plant communities. A lay summary is available for this article. Lay Summary

1. Functional trait diversity can reveal mechanisms of species coexistence in plant communities. Few studies have tested whether functional diversity for foliar traits related to resource-use strategy increases or decreases with declining soil phosphorus (P) in forest communities. 2. We quantified tree basal area and four foliar functional traits (i. e. nitrogen (N), phosphorus (P), thickness and tissue density) for all woody species along the c. 120 000 year Franz Josef soil chronosequence in cool temperate rain forest, where strong shifts occur in light and soil nutrient availability (i. e. total soil P declines from 805 to 100 mg kg⁻¹). We combined the abundance and trait data in functional diversity indices to quantify trait convergence and divergence, in an effort to determine whether mechanisms of coexistence change with soil fertility. 3. Relationships between species trait means and total soil N and P were examined using multiple regression, with and without weighting of species abundances. We used Rao's quadratic entropy to quantify functional diversity at the plot scale, then compared this with random expectation, using a null model that randomizes abundances across species within plots. Taxonomic diversity was measured using Simpson's Diversity. Relationships between functional and taxonomic diversity and total soil P were examined using jackknife linear regression. 4. Leaf N and P declined and leaf thickness and density increased monotonically with declining total soil P along the sequence; these relationships were unaffected by abundance weighting of species in the analyses. Inclusion of total soil N did not improve predictions of trait means. All measures of diversity calculated from presence/absence data were unrelated to total soil N and P. There was no evidence for a relationship between Rao values using quantitative abundances and total soil P. However, there was a strong positive relationship between Rao, expressed relative to random expectation, and total soil P, indicating trait convergence of dominant species as soil P declined. 5. Synthesis: Our results demonstrate that at high fertility locally dominant species differ in resource-use strategy, but as soil fertility declines over the long term, dominant species increasingly converge on a resource-retentive strategy. This suggests that differentiation in resource-use strategy is required for coexistence at high-fertility but not in low-fertility ecosystems.

There is increasing recognition that community assembly theory can offer valuable insights for ecological restoration. We studied community assembly processes following tropical forest restoration efforts, using dung beetles (Scarabaeinae) as a focal taxon to investigate taxonomic and functional patterns of biodiversity recovery. We evaluated the relative importance of the local environment (i.e., canopy cover, understory cover, tree basal area, and soil texture), landscape context (i.e., habitat patch proximity and availability and percentage of surrounding area classified as natural forest or Eucalyptus spp. plantation), and space (i.e., spatial proximity of the study areas to estimate dispersal limitation or unmeasured spatially structured processes) on dung beetle species and functional trait composition across a gradient of 15 restoration sites in Brazilian Atlantic Forest. We also assessed which factors were the primary determinants in the establishment of individual dung beetle functional groups, classified according to size, food relocation habit, diet, and period of flight activity. Both species and functional trait composition were most strongly influenced by the local environment, indicating that assembly was predominantly driven by niche-based processes. Most of the variation explained by space was co-explained by local environment and landscape context, ruling out a strong influence of dispersal limitation and random colonization on assembly following restoration. In addition, nearly all of the variance explained by landscape context was coexplained by local environment, suggesting that arrival and establishment at a site depends on both local and landscape-scale environmental factors. Despite strong evidence for niche-based assembly, a large amount of variation remained unexplained in all models, suggesting that stochastic processes and/or unmeasured environmental variables also play an important role. The relative importance of local environment, landscape context, and space changed considerably when analyzing the assembly mechanisms of each functional group separately. Therefore, to recover distinct functional traits in restoration sites, it may be necessary to manipulate different components of the local environment and surrounding landscape. Overall, this study shows that assembly rules can help to better understand recovery processes, enabling improvement of future restoration efforts.

Intra-speciic variation is the main source of functional trait diversity and has similar ecological effects as inter-speciic variation. We studied 79 species and 3546 individuals from 50 ixed monitoring plots in subtropical evergreen broad - leaved secondary forests in Zhejiang Province, China. Using trait gradient analysis, we examined nine traits (speciic leaf area, leaf dry matter content, wood density, leaf area, chlorophyll content, leaf nitrogen content, leaf phosphorus content, leaf potassium content, and nitrogen-phosphorus ratio) by decomposing species functional traits into alpha (within-community) and beta (among-communities) measure the impact of environmental gradients and the presence of other species on the variation of traits. All nine functional traits showed some degree of differentiation in the forest communities, with a greater range of variation in alpha values than in beta values . Correlations were signiicantly different between the trait differences in the communities. The alpha values of each trait showed a higher correlation with other components than the beta values. The factors affecting intra-speciic trait variation were relatively complex. The alpha component had a more signiicant and stronger effect on intra-speciic trait variation compared to the beta component. Abiotic factors, such as soil nutrient content, soil nitrogen-phosphorus content, directly affected the beta component. In contrast, biotic factors, such as tree height variation, had a direct and stronger effect on the alpha component. Our results demonstrate that alpha and beta components, as independent differentiation axes among coexisting species, have different sensitivities to different environmental factors and traits in different ecological strategies and spatial scales. Trait gradient analysis can more clearly reveal the variation patterns of species traits in communities, which will help to understand the scale effects and potential mechanisms of trait relationships.

Aim: Land-use change typically goes hand in hand with the introduction of exotic species, which mingle with indigenous species to form novel assemblages. Here, we compare the functional structure of indigenous and exotic elements of ground-dwelling arthropod assemblages across four land-uses of varying management intensity. Location: Terceira Island (Azores, North Atlantic). Methods: We used pitfall traps to sample arthropods in 36 sites across the four landuses and collated traits related to dispersal ability, body size and resource use. For both indigenous and exotic species, we examined the impact of land-uses on trait diversity and tested for the existence of non-random assembly processes using null models. We analysed differences in trait composition among land-uses for both indigenous and exotic species with multivariate analyses. We used point-biserial correlations to identity traits significantly correlated with specific land-uses for each element. Results: We recorded 86 indigenous and 116 exotic arthropod species. Under highintensity land-use, both indigenous and exotic elements showed significant trait clustering. Trait composition strongly shifted across land-uses, with indigenous and exotic species being functionally dissimilar in all land-uses. Large-bodied herbivores dominated exotic elements in low-intensity land-uses, while small-bodied spiders dominated exotic elements in high-intensity land-uses. In contrast, with increasing land-use intensity, indigenous species changed from functionally diverse to being dominated by piercing and cutting herbivores. Main conclusions: Our study revealed two main findings: first, in high-intensity land-uses, trait clustering characterized both indigenous and exotic elements; second, exotic species differed in their functional profile from indigenous species in all land-use types. Overall, our results provide new insights into the functional role of exotic species in a land-use context, suggesting that, in agricultural landscape, exotic species may contribute positively to the maintenance of some ecosystem functions.

If natural communities are assembled according to deterministic rules, coexisting species will represent a nonrandom subset of the potential species pool. We tested for signatures of assembly rules in the distribution of species' traits in Pacific rockfish (Sebastes spp.) assemblages. We used morphology, dietary niche (estimated with stable nitrogen isotopes), and distribution data to identify traits that relate to local-scale resource use (the α-niche) and to environmental gradients (the β-niche). We showed that gill raker morphology was related to trophic position (an α-niche axis), while relative eye size was associated with depth habitat (a β-niche axis). We therefore hypothesized that, within assemblages of coexisting rockfish species, the gill raker trait would be overdispersed (evenly spaced) due to limiting similarity, while relative eye size would be clustered due to environmental filtering. We examined the evolutionary relatedness of coexisting species to ask whether phylogenetic community structure and trait distributions gave similar indications about the roles of assembly processes. We tested the trait distributions and phylogenetic structure of 30 published rockfish assemblages against a null model of random community assembly. As predicted, the gill raker trait tended to be more evenly spaced than expected by chance, as did overall body size, while relative eye size was more clustered than expected. Phylogenetic community structure appeared to reflect historical dispersal and speciation and did not provide consistent support for assembly rules. Our results indicate that rockfish community assembly is nonrandom with regard to species' traits and show how distinguishing traits related to the α- and β-niches and incorporating functional morphology can provide for powerful tests of assembly rules.

Minimal systematic research on the ecological interpretation of stone biodeterioration. This study reports dispersal limitation and heterogeneous selection shape the microbial community assembly responsible for the biodeterioration of red sandstone. Furthermore, fundamental metabolic processes of microbial communities, such as ammonium assimilation and nitrogen mineralization, are identified as contributors to stone biodeterioration. This study improves our understanding of microbial community assembly and their functional roles, providing a microbial ecological basis for developing effective strategies for the conservation of stone cultural heritage.

Abiotic filters that interact with wetland plant communities along tidal–fluvial gradients are highly dynamic, and understanding their quantitative thresholds and relationships to interspecific competition is important during an era of sea‐level rise and watershed hydrologic change. Yet, landscape‐scale studies of major coastal rivers from the river mouth to the head of tide, such as this study, remain rare. Here, we develop a new predictive framework for estuarine–tidal river research and management using a river‐specific low‐water datum and the wetland inundation indicator SEVg, the growing‐season sum exceedance value of hourly surface‐water depth. The distribution and variability of the wetland species pool (n = 203) on the 234 river kilometer (rkm) lower Columbia River and estuary floodplain are described for the first time. 4,940 quadrats at 50 marshes were surveyed (2005–2016). Throughout the estuarine–tidal river system, SEVg was well suited to describe the wetland inundation regime and its variability based on the combination of longitudinal river position and elevation. SEVg increased significantly landward. Two primary wetland inundation regimes were identified: the seaward‐tidal, usually greatest during the winter months, and landward‐fluvial, greatest during the growing season. Nearest the ocean, salinity is the abiotic factor limiting species richness and non‐native species. Farther upriver, the daily, seasonal, and interannual variability of the wetting and drying cycle encourage disturbance‐tolerant species and non‐natives and limit the number of hydrophytes and total vegetative cover. Hence, the average between‐year similarity of site‐scale areal cover significantly decreased landward. Hierarchical cluster analysis indicated five vegetative groups and five ecohydrologic zones between rkm 0 and 234 were discriminated with 76 significant species–zone associations. All zones had unique indicator species. Species with high indicator values were Carex lyngbyei throughout the estuarine zones, and Eleocharis palustris, Sagittaria latifolia, and the invasive non‐native Phalaris arundinacea in the upper estuarine and lower, middle, and upper tidal river zones (IV > 0.90). Competition from C. lyngbyei nearest the ocean and P. arundinacea in the tidal river was associated with reduced species richness when total cover was >65%. This framework of filters informs the design and prediction of future wetland plant communities on coastal river floodplains.