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5,191 result(s) for "Controlled conditions"
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Lab-scale investigation of the ability of Polar Organic Chemical Integrative Sampler to catch short pesticide contamination peaks
In this lab-scale study, the POCIS capacity to integrate short contamination peaks of variable intensity and duration was evaluated. POCIS were immersed for 14 days in tanks filled with tap water and spiked at different concentrations with 12 pesticides of various polarities (log K ow  = 1.1–4.7) and classes (herbicides, fungicides, and insecticides). Concentrations were kept relatively constant at 1 μg L −1 and 5 μg L −1 , respectively, in two “background” exposure tanks. Three contamination peaks of increasing intensity and decreasing duration were simulated (10 μg L −1 for 24 h, 40 μg L −1 for 6 h, and 60 μg L −1 for 1 h). This lab-scale study demonstrated that ten moderately polar compounds (2 < log K ow  < 4) showed a linear uptake, as observed in previous studies, while a non-linear model fits the data of the two most polar pesticides (log K ow  < 2). Depending on chemical polarity, some compounds exhibited a “burst effect” or “lag effect” during the first 3 days of exposure. After 14 days of exposure, contamination peaks appeared integrated for seven compounds, showing the ability of POCIS to catch very short pollution events and to provide acceptable time-weighted average concentration estimates under laboratory-controlled conditions.
Physiological and Immunological Status of Adult Honeybees (Apis mellifera) Fed Sugar Syrup Supplemented with Pentadecapeptide BPC 157
Various factors contribute to a decline in diversity and number of bees. Here, an integrated approach in experimental BPC 157 therapy was implemented, combining laboratory-controlled and field study results. The aim of a study was to assess the effects of BPC 157 additional feeding of newly emerged worker honeybees on few biochemical and immunological parameters in hemolymph (glucose, trehalose, lipids, proteins, vitellogenin, glucose-oxidase (GOX)), and hypopharyngeal gland (HPG), in laboratory-controlled conditions. Additionally, to examine the physiological status of protein digestion, the enzymatic activity of leucine aminopeptidase (LAP) in the mid-guts of worker honeybees was analyzed. It was found that individual honeybees, in hoarding cages, following BPC 157 administration through carbohydrate food, showed positive physiological changes when compared to the control groups. Those results were complemented by strong and visible LAP activity, particularly noticeable in the apical parts of the epithelial cells in the mid-guts of young worker honeybees originated from treated hives, suggesting a link between alternative oral therapy with BPC 157 and honeybees’ immunity.
Analysis of the Corrosion Process with the Application of the Novel Type of Coupon Installation
The corrosion process leads to high power consumption, high maintenance costs and the loss of commercial income during downtime in various branches of industry. The proper methods to measure and forecast the corrosion process would help intervene in process production where corrosion is a common phenomenon. Therefore, the main aim of this experimental study is to improve the widely used corrosion monitoring methods with corrosion coupons. As part of this work, the installation for testing corrosion process under controlled conditions and with the application of mild steel coupons is proposed. The measurement concept is to install the coupons in a stream with the corrosion liquid (these conditions should be controlled). The numerical simulations of the fluid flow in the coupon installation were carried out, and the obtained results in the form of a velocity map allowed us to propose the placement of the coupons in the tested installation in such a way that the flowing liquid evenly washed the coupon surface. The developed coupon installation was tested for aggressive corrosive conditions, which were assessed using the water stability indices (Langelier Saturation Index and Ryznar stability index). Moreover, the inductively coupled plasma optical emission spectroscopy analysis characterised the liquid samples from the tested coupon installation. The corrosion process for the applied conditions was defined based on the corrosion rate of the tested coupons. This process was also confirmed by obtaining the Raman spectrum for the used corrosion coupons. The obtained investigation contributes significantly by developing the novel coupon installation and demonstrating the procedure for testing the corrosion process with the application of coupons. This setup and method might be successfully applied for accelerated laboratory tests.
Sequencing error profiles of Illumina sequencing instruments
Sequencing technology has achieved great advances in the past decade. Studies have previously shown the quality of specific instruments in controlled conditions. Here, we developed a method able to retroactively determine the error rate of most public sequencing datasets. To do this, we utilized the overlaps between reads that are a feature of many sequencing libraries. With this method, we surveyed 1943 different datasets from seven different sequencing instruments produced by Illumina. We show that among public datasets, the more expensive platforms like HiSeq and NovaSeq have a lower error rate and less variation. But we also discovered that there is great variation within each platform, with the accuracy of a sequencing experiment depending greatly on the experimenter. We show the importance of sequence context, especially the phenomenon where preceding bases bias the following bases toward the same identity. We also show the difference in patterns of sequence bias between instruments. Contrary to expectations based on the underlying chemistry, HiSeq X Ten and NovaSeq 6000 share notable exceptions to the preceding-base bias. Our results demonstrate the importance of the specific circumstances of every sequencing experiment, and the importance of evaluating the quality of each one.
Interpreting a covid-19 test result
Correspondence to J Watson Jessica.Watson@bristol.ac.uk What you need to know Interpreting the result of a test for covid-19 depends on two things: the accuracy of the test, and the pre-test probability or estimated risk of disease before testing A positive RT-PCR test for covid-19 test has more weight than a negative test because of the test’s high specificity but moderate sensitivity A single negative covid-19 test should not be used as a rule-out in patients with strongly suggestive symptoms Clinicians should share information with patients about the accuracy of covid-19 tests Across the world there is a clamour for covid-19 testing, with Tedros Adhanom Ghebreyesus, director general of the World Health Organization, encouraging countries to “test, test, test.” A systematic review of the accuracy of covid-19 tests reported false negative rates of between 2% and 29% (equating to sensitivity of 71-98%), based on negative RT-PCR tests which were positive on repeat testing.6 The use of repeat RT-PCR testing as gold standard is likely to underestimate the true rate of false negatives, as not all patients in the included studies received repeat testing and those with clinically diagnosed covid-19 were not considered as actually having covid-19.6 Accuracy of viral RNA swabs in clinical practice varies depending on the site and quality of sampling. In one study, sensitivity of RT-PCR in 205 patients varied, at 93% for broncho-alveolar lavage, 72% for sputum, 63% for nasal swabs, and only 32% for throat swabs.7 Accuracy is also likely to vary depending on stage of disease8 and degree of viral multiplication or clearance.9 Higher sensitivities are reported depending on which gene targets are used, and whether multiple gene tests are used in combination.310 Reported accuracies are much higher for in vitro studies, which measure performance of primers using coronavirus cell culture in carefully controlled conditions.2 The lack of a clear-cut “gold-standard” is a challenge for evaluating covid-19 tests; pragmatically, clinical adjudication may be the best available “gold standard,” based on repeat swabs, history, and contact with patients known to have covid-19, chest radiographs, and computed tomography scans. Inevitably this introduces some incorporation bias, where the test being evaluated forms part of the reference standard, and this would tend to inflate the measured sensitivity of these tests.11 Disease prevalence can also affect estimates of accuracy: tests developed and evaluated in populations with high prevalence (eg, secondary care) may have lower sensitivity when applied in a lower prevalence setting (eg, primary care).11 One community based study of 4653 close contacts of patients with covid-19 tested RT-PCR throat swabs every 48 hours during a 14 day quarantine period.
Numerical Simulation and Model of Deformation Features of Destabilized Mining Slope Under Fault-Controlled Conditions
This paper took the Fengmaoding slope, typically found in the mountainous areas of central Shanxi province, as its research area. The stratum structure of the Fengmaoding slope is a typical coal measures stratum covered by a layer of loess. There are communication towers on the slope mass and top of the slope; railways, roads, and rivers at the foot of the slope. There are many villages across from the slope, therefore, the buildings and structures nearby, even the lives of the villagers are threatened by the damages caused by the deformation of the slope. Tectonic development and mining activities have very profound effects on the stability of the slope. Considering the above, this paper analyzed the effects of the fault in controlling the deformation features of the destabilized slope during underground mining by adopting the method of numerical simulation from these perspectives including displacement, stress, strain, among others. under different circumstances (the faulted and unfaulted) so as to provide guidance for future studies about landslides of the same type and give preventive proposals for reference.
Abiotic and biotic stress combinations
Environmental stress conditions such as drought, heat, salinity, cold, or pathogen infection can have a devastating impact on plant growth and yield under field conditions. Nevertheless, the effects of these stresses on plants are typically being studied under controlled growth conditions in the laboratory. The field environment is very different from the controlled conditions used in laboratory studies, and often involves the simultaneous exposure of plants to more than one abiotic and/or biotic stress condition, such as a combination of drought and heat, drought and cold, salinity and heat, or any of the major abiotic stresses combined with pathogen infection. Recent studies have revealed that the response of plants to combinations of two or more stress conditions is unique and cannot be directly extrapolated from the response of plants to each of the different stresses applied individually. Moreover, the simultaneous occurrence of different stresses results in a high degree of complexity in plant responses, as the responses to the combined stresses are largely controlled by different, and sometimes opposing, signaling pathways that may interact and inhibit each other. In this review, we will provide an update on recent studies focusing on the response of plants to a combination of different stresses. In particular, we will address how different stress responses are integrated and how they impact plant growth and physiological traits.
Root-associated fungal microbiota of nonmycorrhizal Arabis alpina and its contribution to plant phosphorus nutrition
Most land plants live in association with arbuscular mycorrhizal (AM) fungi and rely on this symbiosis to scavenge phosphorus (P) from soil. The ability to establish this partnership has been lost in some plant lineages like the Brassicaceae, which raises the question of what alternative nutrition strategies such plants have to grow in P-impoverished soils. To understand the contribution of plant–microbiota interactions, we studied the root-associated fungal microbiome of Arabis alpina (Brassicaceae) with the hypothesis that some of its components can promote plant P acquisition. Using amplicon sequencing of the fungal internal transcribed spacer 2, we studied the root and rhizosphere fungal communities of A. alpina growing under natural and controlled conditions including low-P soils and identified a set of 15 fungal taxa consistently detected in its roots. This cohort included a Helotiales taxon exhibiting high abundance in roots of wild A. alpina growing in an extremely P-limited soil. Consequently, we isolated and subsequently reintroduced a specimen from this taxon into its native P-poor soil in which it improved plant growth and P uptake. The fungus exhibited mycorrhiza-like traits including colonization of the root endosphere and P transfer to the plant. Genome analysis revealed a link between its endophytic lifestyle and the expansion of its repertoire of carbohydrate-active enzymes. We report the discovery of a plant–fungus interaction facilitating the growth of a nonmycorrhizal plant under native P-limited conditions, thus uncovering a previously underestimated role of root fungal microbiota in P cycling.
Measuring actual learning versus feeling of learning in response to being actively engaged in the classroom
We compared students’ self-reported perception of learning with their actual learning under controlled conditions in largeenrollment introductory college physics courses taught using 1) active instruction (following best practices in the discipline) and 2) passive instruction (lectures by experienced and highly rated instructors). Both groups received identical class content and handouts, students were randomly assigned, and the instructor made no effort to persuade students of the benefit of either method. Students in active classrooms learned more (as would be expected based on prior research), but their perception of learning, while positive, was lower than that of their peers in passive environments. This suggests that attempts to evaluate instruction based on students’ perceptions of learning could inadvertently promote inferior (passive) pedagogical methods. For instance, a superstar lecturer could create such a positive feeling of learning that students would choose those lectures over active learning. Most importantly, these results suggest that when students experience the increased cognitive effort associated with active learning, they initially take that effort to signify poorer learning. That disconnect may have a detrimental effect on students’ motivation, engagement, and ability to self-regulate their own learning. Although students can, on their own, discover the increased value of being actively engaged during a semester-long course, their learning may be impaired during the initial part of the course. We discuss strategies that instructors can use, early in the semester, to improve students’ response to being actively engaged in the classroom.