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Surface ocean pH is declining due to anthropogenic atmospheric CO 2 uptake with a global decline of ~0.3 possible by 2100. Extracellular pH influences a range of biological processes, including nutrient uptake, calcification and silicification. However, there are poor constraints on how pH levels in the extracellular microenvironment surrounding phytoplankton cells (the phycosphere) differ from bulk seawater. This adds uncertainty to biological impacts of environmental change. Furthermore, previous modelling work suggests that phycosphere pH of small cells is close to bulk seawater, and this has not been experimentally verified. Here we observe under 140 μmol photons·m −2 ·s −1 the phycosphere pH of Chlamydomonas concordia (5 µm diameter), Emiliania huxleyi (5 µm), Coscinodiscus radiatus (50 µm) and C. wailesii (100 µm) are 0.11 ± 0.07, 0.20 ± 0.09, 0.41 ± 0.04 and 0.15 ± 0.20 (mean ± SD) higher than bulk seawater (pH 8.00), respectively. Thickness of the pH boundary layer of C. wailesii increases from 18 ± 4 to 122 ± 17 µm when bulk seawater pH decreases from 8.00 to 7.78. Phycosphere pH is regulated by photosynthesis and extracellular enzymatic transformation of bicarbonate, as well as being influenced by light intensity and seawater pH and buffering capacity. The pH change alters Fe speciation in the phycosphere, and hence Fe availability to phytoplankton is likely better predicted by the phycosphere, rather than bulk seawater. Overall, the precise quantification of chemical conditions in the phycosphere is crucial for assessing the sensitivity of marine phytoplankton to ongoing ocean acidification and Fe limitation in surface oceans.

Diatoms are eukaryotic microalgae that produce species-specifically structured cell walls made of SiO₂ (silica). Formation of the intricate silica structures of diatoms is regarded as a paradigm for biomolecule-controlled self-assembly of three-dimensional, nano- to microscale-patterned inorganic materials. Silica formation involves long-chain polyamines and phosphoproteins (silaffins and silacidins), which are readily soluble in water, and spontaneously form dynamic supramolecular assemblies that accelerate silica deposition and influence silica morphogenesis in vitro. However, synthesis of diatom-like silica structure in vitro has not yet been accomplished, indicating that additional components are required. Here we describe the discovery and intracellular location of six novel proteins (cingulins) that are integral components of a silica-forming organic matrix (microrings) in the diatom Thalassiosira pseudonana. The cingulin-containing microrings are specifically associated with girdle bands, which constitute a substantial part of diatom biosilica. Remarkably, the microrings exhibit protein-based nanopatterns that closely resemble characteristic features of the girdle band silica nanopatterns. Upon the addition of silicic acid the microrings become rapidly mineralized in vitro generating nanopatterned silica replicas of the microring structures. A silica-forming organic matrix with characteristic nanopatterns was also discovered in the diatom Coscinodiscus wailesii, which suggests that preassembled protein-based templates might be general components of the cellular machinery for silica morphogenesis in diatoms. These data provide fundamentally new insight into the molecular mechanisms of biological silica morphogenesis, and may lead to the development of self-assembled 3D mineral forming protein scaffolds with designed nanopatterns for a host of applications in nanotechnology.

The eastern part of Odisha is the coastal line covering the districts from Ganjam to Balasore. In the present investigation, a total 54 phytoplankton species under 30 genera were reported from different sites of east coast Odisha. The diversity of phytoplankton included three divisions such as Chlorophyta (02 species), Bacillariophyta (42 species) and Dinophyta (10 species). Altogether 21 phytoplanktons were for the first time from the Odisha coast, namely Alexandrium foedum Balech, Bleakeleya notata (Grunow) Round, Coscinodiscus asteromphalus Ehrenberg, Coscinodiscus granii L.F.Gough, Coscinodiscus radiatus Ehrenberg, Coscinodiscus wailesii Gran & Angst, Diploneis vacillan var. renitens (A.W.F.Schmidt) Cleve, Diploneis littoralis (Donkin) Cleve, Ditylum brightwellii (T.West) Grunow, Gonyaulax polygramma F.Stein, Hemiaulus membranaceus Cleve, Lampriscus shadboltianum (Greville) Peragallo & Peragallo, Pediastrum duplex var. subgranulatum Raciborski, Pediastrum simplex Meyen, Proboscia alata (Brightwell) Sundström, Pseudonitzschia seriata (Cleve) H. Peragallo, Rhizosolenia pungens A. Cleve-Euler, Stephanopyxis palmeriana (Greville) Grunow, Thalassionema nitzschioides (Grunow) Mereschkowsky, Thalassiosira eccentrica (Ehrenberg) Cleve and Thalassiosira oestrupii var venrickae G.Fryxell & Hasle. Furthermore, our results revealed that few diatom species such as Coscinodiscus asteromphalus Ehrenberg, Coscinodiscus centralis Ehrenberg, Coscinodiscus radiatus Ehrenberg, Coscinodiscus wailesii Gran & Angst, Bacteriastrum delicatulum Cleve and Bacteriastrum hyalinum Lauder were recorded in more than five sites of east coast Odisha. By the analysis of Bary-Curtis similarity cluster, similarity index, Jaccard’s similarity and hierarchical cluster analysis showed that these species have the ability to survive in the diverse ecological conditions. On the other hand, only two species of chlorophyceae namely Pediastrum simplex Meyen and Pediastrum duplex var. subgranulatum Raciborski were recorded in two sites of Bhadrak district only. Moreover, 14 bloom and toxin producing phytoplanktons were for the first time recorded in the present study.

The Helgoland Roads time series is one of the richest temporal marine data sets available. Running since 1962, it documents changes for phytoplankton, salinity, Secchi disc depths and macronutrients. Uniquely, the data have been carefully quality controlled and linked to relevant meta-data, and the pelagic time series is further augmented by zooplankton, intertidal macroalgae, macrozoobenthos and bacterioplankton data. Data analyses have shown changes in hydrography and biota around Helgoland. In the late 1970s, water inflows from the south-west to the German Bight increased with a corresponding increase in flushing rates. Salinity and annual mean temperature have also increased since 1962 and the latter by an average of 1.67°C. This has influenced seasonal phytoplankton growth causing significant shifts in diatom densities and the numbers of large diatoms (e. g. Coscinodiscus wailesii). Changes in zooplankton diversity have included the appearance of the ctenophore Mnemiopsis leidyi. The macroalgal community also showed an increase in green algal and a decrease in brown algal species after 1959. Over 30 benthic macrofaunal species have been newly recorded at Helgoland over the last 20 years, with a distinct shift towards southern species. These detailed data provide the basis for long-term analyses of changes on many trophic levels at Helgoland Roads.

Coscinodiscus is a genus common in marine phytoplankton, with some species thought to have a significant negative ecological impact. However, the availability of their genome sequences is rather limited. Here, we assembled and annotated the first complete mitochondrial genome (mtDNA) of the species Coscinodiscus granii L.F.Gough 1905, as part of our efforts to gain a better understanding of the genetic characteristics of Coscinodiscus taxa at a genomic level. The circular mtDNA was 34,970 bp in length and encoded 60 genes, including 32 protein-coding genes (PCGs), 24 transfer RNA (tRNA) genes, two ribosomal RNA (rRNA) genes, and two conserved open reading frames (orfs). The overall GC content of C. granii mtDNA was 24.30%, which was slightly lower than that of C. wailesii (25.00%), the first species in the genus Coscinodiscus whose mtDNA has been reported, and higher than that of Melosira undulata (21.60%), the first species in the class Coscinodiscophyceae whose mtDNA has been reported. As expected for congeneric species, phylogenetic analysis using concatenated amino acid sequences of 27 shared PCGs suggested that C. granii has a closer evolutionary relationship with C. wailesii. Coscinodiscus was found to be monophyletic in the phylogeny. The complete mtDNAs of more Coscinodiscus species will facilitate the exploration of the evolutionary relationships of species in the Class Coscinodiscophyceae.

Coscinodiscus is a species-rich genus with about 400 species described, many of which are harmful algal bloom species with significant negative ecological impact. Despite of their importance in primary production and as harmful algal bloom species, genome data for species in this genus is limited. No mitochondrial genome (mtDNA) of any species in this genus has been reported. Here, the complete mtDNA sequence of the Coscinodiscus wailesii Gran & Angst 1931 was constructed and analyzed. The circular mtDNA was 36,071 bp in length, encoding 64 genes, including 34 protein coding genes (PCGs), 24 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes and 4 conserved open reading frames (orfs). The overall AT content of C. wailesii mtDNA was 75.00%, which was slightly lower than that of Melosira undulate (78.40%). Maximum likelihood (ML) phylogenetic analysis using 29 shared protein-coding genes revealed that C. wailesii clustered well with M. undulata, which was the only species of class Coscinodiscophyceae whose mtDNA has been fully constructed. The complete mtDNAs of more Coscinodiscus species will be valuable for studying the evolutionary relationships among species in the genus Coscinodiscus and in the Class of Coscinodiscophyceae.

Iron limitation often results in increased cellular silica contents of diatoms, suggesting that diatoms grow thicker and possibly mechanically stronger frustules when limited. We performed stability measurements for six diatom species grown under iron-limitation and iron-sufficient conditions. Frustule strength increased in all species when grown under iron limitation, with this effect being statistically significant for four of them. Valve morphology and silica content of the pennate Fragilariopsis kerguelensis and the centric Coscinodiscus wailesii changed under iron limitation but only valve morphology changes were significant; F. kerguelensis grew thicker costae while C. wailesii had smaller pores, especially in the outer part of the valves. These morphological changes are clearly in agreement with increased mechanical strength. Increased cellular silica concentrations in diatoms grown under iron limitation do result in increased frustule strength, most likely improving their protection against grazers.

The carbon and nitrogen content of transparent exopolymer particles (TEP) was determined and related to the concentration of TEP as quantified by a colorimetrical method. TEP were produced in the laboratory from dissolved precursors by laminar or turbulent shear. Dissolved precursors were obtained by 0.2 μm filtration from diatom cultures, with or without nutrient reduction, and from natural diatom populations. The relationship between carbon and TEP was significant, linear and species-specific. Carbon concentration of TEP derived from this relationship concurred with previous findings. Shortage of silicic acid or nitrate in the culture media had no effect on the carbon content of TEP. Molar C:N ratios of TEP were above the Redfield ratio, with a mean value of 26. It is suggested that the nitrogen fraction of TEP can be explained by adsorption of dissolved organic nitrogen (DON) onto TEP. Based on the newly established relationship, concentrations of TEP-derived carbon (TEP-C) were calculated for the Baltic Sea, the coastal Pacific, the North East Atlantic and the Northern Adriatic Sea.