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Mammalian carnivores are considered a key group in maintaining ecological health and can indicate potential ecological integrity in landscapes where they occur. Carnivores also hold high conservation value and their habitat requirements can guide management and conservation plans. The order Carnivora has 84 species from 8 families in the Neotropical region: Canidae; Felidae; Mephitidae; Mustelidae; Otariidae; Phocidae; Procyonidae; and Ursidae. Herein, we include published and unpublished data on native terrestrial Neotropical carnivores (Canidae; Felidae; Mephitidae; Mustelidae; Procyonidae; and Ursidae). NEOTROPICAL CARNIVORES is a publicly available data set that includes 99,605 data entries from 35,511 unique georeferenced coordinates. Detection/non-detection and quantitative data were obtained from 1818 to 2018 by researchers, governmental agencies, non-governmental organizations, and private consultants. Data were collected using several methods including camera trapping, museum collections, roadkill, line transect, and opportunistic records. Literature (peer-reviewed and grey literature) from Portuguese, Spanish and English were incorporated in this compilation. Most of the data set consists of detection data entries (n = 79,343; 79.7%) but also includes non-detection data (n = 20,262; 20.3%). Of those, 43.3% also include count data (n = 43,151). The information available in NEOTROPICAL CARNIVORES will contribute to macroecological, ecological, and conservation questions in multiple spatio-temporal perspectives. As carnivores play key roles in trophic interactions, a better understanding of their distribution and habitat requirements are essential to establish conservation management plans and safeguard the future ecological health of Neotropical ecosystems. Our data paper, combined with other large-scale data sets, has great potential to clarify species distribution and related ecological processes within the Neotropics. There are no copyright restrictions and no restriction for using data from this data paper, as long as the data paper is cited as the source of the information used. We also request that users inform us of how they intend to use the data.

Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km2 (158 cm2) to 100 km2 (1,000,000,000,000 cm2).Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.

Despite the importance of pollinating insects to natural environments and agriculture, there have been few attempts to unite the existing plant–pollinator interaction datasets into a single depository using a common format. Accordingly, we have created one of the world’s first online, open-access, and searchable pollinator–plant interaction databases. DoPI (The Database of Pollinator Interactions) was built from a systematic review of the scientific literature and unpublished datasets requested from researchers and organizations. We collated records of interactions between British plant and insect flower–visitor species (or genera), together with associated metadata (date, location, habitat, source publication) when available. The dataset currently (December 2021) contains 101,539 records, detailing over 320,000 interactions. The number of interactions (i.e., the number of times a pairwise species interaction was recorded per occasion) varies considerably among records, averaging 3.6. These include records from 1888 pollinator species and 1241 plant species, totaling >17,000 pairwise species interactions. By combining a large volume of information in a single repository, DoPI can be used to answer fundamental ecological questions on the dynamics of pollination interactions in space and time, as well as applied questions in conservation practice. We hope this dynamic database will be a useful tool not only for researchers, but also for conservationists, funding agencies, governmental departments, beekeepers, agronomists, and gardeners. We request that this paper is cited when using the data in publications and individual studies when appropriate. Researchers and organizations are encouraged to add further data in the future. The database can be accessed at: https://www.dopi.org.uk/.

Managing wildlife populations in the face of global change requires regular data on the abundance and distribution of wild animals, but acquiring these over appropriate spatial scales in a sustainable way has proven challenging. Here we present the data from Snapshot USA 2020, a second annual national mammal survey of the USA. This project involved 152 scientists setting camera traps in a standardized protocol at 1485 locations across 103 arrays in 43 states for a total of 52,710 trap-nights of survey effort. Most (58) of these arrays were also sampled during the same months (September and October) in 2019, providing a direct comparison of animal populations in 2 years that includes data from both during and before the COVID-19 pandemic. All data were managed by the eMammal system, with all species identifications checked by at least two reviewers. In total, we recorded 117,415 detections of 78 species of wild mammals, 9236 detections of at least 43 species of birds, 15,851 detections of six domestic animals and 23,825 detections of humans or their vehicles. Spatial differences across arrays explained more variation in the relative abundance than temporal variation across years for all 38 species modeled, although there are examples of significant site-level differences among years for many species. Temporal results show how species allocate their time and can be used to study species interactions, including between humans and wildlife. These data provide a snapshot of the mammal community of the USA for 2020 and will be useful for exploring the drivers of spatial and temporal changes in relative abundance and distribution, and the impacts of species interactions on daily activity patterns. There are no copyright restrictions, and please cite this paper when using these data, or a subset of these data, for publication.

Data assimilation techniques are becoming increasingly popular for climate reconstruction. They benefit from estimating past climate states from both observation information and from model simulations. The first monthly global paleo‐reanalysis (EKF400) was generated over the 1600 and 2005 time period, and it provides estimates of several atmospheric fields. Here we present a new, considerably improved version of EKF400 (EKF400v2). EKF400v2 uses atmospheric‐only general circulation model simulations with a greatly extended observational network of early instrumental temperature and pressure data, documentary evidences and tree‐ring width and density proxy records. Furthermore, new observation types such as monthly precipitation amounts, number of wet days and coral proxy records were also included in the assimilation. In the version 2 system, the assimilation process has undergone methodological improvements such as the background‐error covariance matrix is estimated with a blending technique of a time‐dependent and a climatological covariance matrices. In general, the applied modifications resulted in enhanced reconstruction skill compared to version 1, especially in precipitation, sea‐level pressure and other variables beside the mostly assimilated temperature data, which already had high quality in the previous version. Additionally, two case studies are presented to demonstrate the applicability of EKF400v2 to analyse past climate variations and extreme events, as well as to investigate large‐scale climate dynamics. This paper presents the EKF400v2 global monthly paleo‐reanalysis, generated with a paleoclimate data assimilation method, covering the last 400 years. The paleo‐reanalysis provides several climate fields such as temperature, precipitation and sea‐level pressure. We compare EKF400v2 to a previous version, describe the extended observational network, the model simulations and highlight the applied modifications to the assimilation system. The paleo‐reanalysis is evaluated in the 20th century, and two case studies demonstrate the usage of the dataset to investigate past climate variability.

Teleost fishes account for 96% of all fish species and exhibit a spectacular variety of body forms. Teleost lineages range from deep bodied to elongate (e.g., eels, needlefish), laterally compressed (e.g., ribbonfish) to globular (e.g., pufferfish), and include uniquely shaped lineages such as seahorses, flatfishes, and ocean sunfishes. Adaptive body shape convergence within fishes has long been hypothesized but the nature of the relationships between fish form and ecological and environmental variables remain largely unknown at the macroevolutionary scale. To facilitate the investigation of the interacting factors influencing teleost body shape evolution we measured eight functionally relevant linear traits on adult-sized specimens along with specimen mass. Linear measurements of standard length, maximum body depth, maximum fish width, lower jaw length, mouth width, head depth, minimum caudal peduncle depth, and minimum caudal peduncle width were taken in millimeters with calipers, or tape measures for oversized specimens. We measured these traits on a total of 16,523 specimens (1—3 specimens per species) at the Smithsonian National Museum of Natural History and took approximately 7000 person hours of data collection to complete. The data went through a three-step error-checking process to clean and validate the data and then species averages were calculated. We present the complete specimen data set, which encompasses approximately one-fifth of extant teleost species diversity, spanning ~90% of teleost families and ~96% of orders. The species and family names are compatible with the taxonomy used by FishBase and the order information with the phylogenetically informed taxonomy of Betancur-R and colleagues published in 2014. This dataset is licensed under Creative Commons CC0 1.0 Universal (CC0 1.0) but please cite this paper when using the data or a subset of it.

Motivation In order to understand how species evolutionarily responded to Plio‐Pleistocene climate oscillations (e.g. in terms of speciation, extinction, migration and adaptation), it is first important to have a good understanding of those past climate changes per se. This, however, is currently limited due to the lack of global‐scale climatic datasets with high temporal resolution spanning the Plio‐Pleistocene. To fill this gap, I here present Oscillayers, a global‐scale and region‐specific bioclim dataset, facilitating the study of climatic oscillations during the last 5.4 million years at high spatial (2.5 arc‐minutes) and temporal (10 kyr time periods) resolution. This dataset builds upon interpolated anomalies (Δ layers) between bioclim layers of the present and the Last Glacial Maximum (LGM) that are scaled relative to the Plio‐Pleistocene global mean temperature curve, derived from benthic stable oxygen isotope ratios, to generate bioclim variables for 539 time periods. Evaluation of the scaled, interpolated estimates of palaeo‐climates generated for the Holocene, Last Interglacial and Pliocene showed good agreement with independent general circulation models (GCMs) for respective time periods in terms of pattern correlation and absolute differences. Oscillayers thus provides a new tool for studying spatial‐temporal patterns of evolutionary and ecological processes at high temporal and spatial resolution. Main types of variable contained Nineteen bioclim variables for time periods throughout the Plio‐Pleistocene. Input data and R script to recreate all 19 bioclim variables. Spatial location and grain Global at 2.5 arc‐minutes (4.65 x 4.65 = 21.62 km2 at the equator). Time period and grain The last 5.4 million years. The grain is 10 kyr (= 539 time periods). Level of measurement Data are for terrestrial climates (excluding Antarctica) taking sea level changes into account. Software format All data are available as ASCII grid files.

Documenting and understanding long-term biodiversity change is limited by the availability of historical data, particularly from periods preceding major anthropogenic changes associated with the Industrial Revolution. We mined the information of a standardized historical survey developed in 628 localities across Spain between 1574 and 1582 (Relaciones Topográficas de Felipe II) with the goal of producing a general characterization of Spanish settlements, including, though not limited to, natural resources. From this survey, we were able to gather 7309 records for 75 wild plant taxa, 89 wild animal taxa, and 60 crop and domestic animal taxa. These data can be used to reconstruct historical land use and habitat cover, and model historical distributions of many species, including emblematic ones such as wolf and bear, which can establish reference distributions to assess range and niche expansion, contraction, and shifts. Data are provided under a Creative Commons Attribution Non Commercial (CC-BY-NC) 4.0 License. Please cite this data paper when the data are used in publications. The authors are open to collaborate in projects based on this dataset.

Plant recruitment interactions (i.e., what recruits under what) shape the composition, diversity, and structure of plant communities. Despite the huge body of knowledge on the mechanisms underlying recruitment interactions among species, we still know little about the structure of the recruitment networks emerging in ecological communities. Modeling and analyzing the community-level structure of plant recruitment interactions as a complex network can provide relevant information on ecological and evolutionary processes acting both at the species and ecosystem levels. We report a data set containing 143 plant recruitment networks in 23 countries across five continents, including temperate and tropical ecosystems. Each network identifies the species under which another species recruits. All networks report the number of recruits (i.e., individuals) per species. The data set includes >850,000 recruiting individuals involved in 118,411 paired interactions among 3318 vascular plant species across the globe. The cover of canopy species and open ground is also provided. Three sampling protocols were used: (1) The Recruitment Network (RN) protocol (106 networks) focuses on interactions among established plants (“canopy species”) and plants in their early stages of recruitment (“recruit species”). A series of plots was delimited within a locality, and all the individuals recruiting and their canopy species were identified; (2) The paired Canopy-Open (pCO) protocol (26 networks) consists in locating a potential canopy plant and identifying recruiting individuals under the canopy and in a nearby open space of the same area; (3) The Georeferenced plot (GP) protocol (11 networks) consists in using information from georeferenced individual plants in large plots to infer canopy-recruit interactions. Some networks incorporate data for both herbs and woody species, whereas others focus exclusively on woody species. The location of each study site, geographical coordinates, country, locality, responsible author, sampling dates, sampling method, and life habits of both canopy and recruit species are provided. This database will allow researchers to test ecological, biogeographical, and evolutionary hypotheses related to plant recruitment interactions. There are no copyright restrictions on the data set; please cite this data paper when using these data in publications.

As boreal forests rapidly warm due to anthropogenic climate change, long-term baseline community data are needed to effectively characterize the corresponding ecological changes that are occurring in these forests. The combined seasonal dynamics (SEADYN) and annual dynamics (ANNDYN) data set, which documents the vegetative changes in boreal forests during the snow-free period, is one such source of baseline community data. These data were collected by George H. La Roi and colleagues in Alberta, Canada from 1980 to 2015 within permanent sampling plots established in the Hondo-Slave Lake area (eight stands; 1980–2015) in central Alberta and the Athabasca Oil Sands (AOS) region (17 stands; 1981–1984) near Fort McMurray in northeastern Alberta. Various data were collected, with temporal and spatial coverage differing by data set. These data sets include, but are not limited to, cover of each identified vascular plant and bryoid (moss, liverwort, and lichen) species; forest mensuration; forest litter production; and soil temperature and moisture. Notably, permanent sampling plots were set up as a grid, which will facilitate analyses of spatial relations. These data can be used to analyze long-term changes in seasonal dynamics and succession within boreal forest communities and serve as a baseline for comparison with future forest conditions in unmanaged, managed, and reclaimed forests. Data are released under a CC-BY license; please cite this data paper when using the data for analyses.