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result(s) for
"Decapoda (Crustacea) - classification"
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Marine Decapod Crustacea
by
Poore, Gary C. B
,
Ahyong, Shane T
in
Crustacea-Evolution
,
Decapoda (Crustacea)-Classification
,
Decapoda (Crustacea)-Evolution
2023
Decapod crustaceans, shrimps, crabs, prawns and their allies are highly visible and important members of marine environments. They are among the most charismatic of marine animals, inhabiting beaches, rocky shores and the deep sea, hiding under stones, burrowing in the sediment and nestling in among algae and many other microhabitats. However, most are difficult to identify by the specialist and amateur naturalist alike.Marine Decapod Crustacea explains the anatomical features necessary for differentiating taxa and includes diagnoses and identification keys to all 189 families and 2121 genera of marine Decapoda. Many decapods have vivid colours, which are showcased in a selection of spectacular photographs of many representative species.This volume provides an entry to the literature for taxonomists, naturalists, consultants, ecologists, teachers and students wanting to identify local faunas and understand this diverse group
The Emergence of Lobsters: Phylogenetic Relationships, Morphological Evolution and Divergence Time Comparisons of an Ancient Group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida)
by
Martin, Joel W.
,
Chu, Ka-Hou
,
Ahyong, Shane T.
in
Animals
,
Arthropod Proteins - genetics
,
Biological Evolution
2014
Lobsters are a ubiquitous and economically important group of decapod crustaceans that include the infraorders Polychelida, Glypheidea, Astacidea and Achelata. They include familiar forms such as the spiny, slipper, clawed lobsters and crayfish and unfamiliar forms such as the deep-sea and \"living fossil\" species. The high degree of morphological diversity among these infraorders has led to a dynamic classification and conflicting hypotheses of evolutionary relationships. In this study, we estimated phylogenetic relationships among the major groups of all lobster families and 94% of the genera using six genes (mitochondrial and nuclear) and 195 morphological characters across 173 species of lobsters for the most comprehensive sampling to date. Lobsters were recovered as a non-monophyletic assemblage in the combined (molecular + morphology) analysis. All families were monophyletic, with the exception of Cambaridae, and 7 of 79 genera were recovered as poly- or paraphyletic. A rich fossil history coupled with dense taxon coverage allowed us to estimate and compare divergence times and origins of major lineages using two drastically different approaches. Age priors were constructed and/or included based on fossil age information or fossil discovery, age, and extant species count data. Results from the two approaches were largely congruent across deep to shallow taxonomic divergences across major lineages. The origin of the first lobster-like decapod (Polychelida) was estimated in the Devonian (~409-372 Ma) with all infraorders present in the Carboniferous (~353-318 Ma). Fossil calibration subsampling studies examined the influence of sampling density (number of fossils) and placement (deep, middle, and shallow) on divergence time estimates. Results from our study suggest including at least 1 fossil per 10 operational taxonomic units (OTUs) in divergence dating analyses.
Journal Article
The discovery of new deep-sea hydrothermal vent communities in the Southern Ocean and implications for biogeography
by
Tyler, PA
,
Rogers, AD
,
Naveiro-Garabato, A
in
Animals
,
Antarctic Regions
,
Bacteria - classification
2012
Since the first discovery of deep-sea hydrothermal vents along the Galápagos Rift in 1977, numerous vent sites and endemic faunal assemblages have been found along mid-ocean ridges and back-arc basins at low to mid latitudes. These discoveries have suggested the existence of separate biogeographic provinces in the Atlantic and the North West Pacific, the existence of a province including the South West Pacific and Indian Ocean, and a separation of the North East Pacific, North East Pacific Rise, and South East Pacific Rise. The Southern Ocean is known to be a region of high deep-sea species diversity and centre of origin for the global deep-sea fauna. It has also been proposed as a gateway connecting hydrothermal vents in different oceans but is little explored because of extreme conditions. Since 2009 we have explored two segments of the East Scotia Ridge (ESR) in the Southern Ocean using a remotely operated vehicle. In each segment we located deep-sea hydrothermal vents hosting high-temperature black smokers up to 382.8°C and diffuse venting. The chemosynthetic ecosystems hosted by these vents are dominated by a new yeti crab (Kiwa n. sp.), stalked barnacles, limpets, peltospiroid gastropods, anemones, and a predatory sea star. Taxa abundant in vent ecosystems in other oceans, including polychaete worms (Siboglinidae), bathymodiolid mussels, and alvinocaridid shrimps, are absent from the ESR vents. These groups, except the Siboglinidae, possess planktotrophic larvae, rare in Antarctic marine invertebrates, suggesting that the environmental conditions of the Southern Ocean may act as a dispersal filter for vent taxa. Evidence from the distinctive fauna, the unique community structure, and multivariate analyses suggest that the Antarctic vent ecosystems represent a new vent biogeographic province. However, multivariate analyses of species present at the ESR and at other deep-sea hydrothermal vents globally indicate that vent biogeography is more complex than previously recognised.
Journal Article
Advances in freshwater decapod systematics and biology
by
Yeo, Darren
,
Cumberlidge, Neil
,
Klaus, Sebastian
in
Classification
,
Decapoda (Crustacea)
,
Freshwater invertebrates
2014,2015
Advances in Freshwater Decapod Systematics and Biology presents papers on taxonomy, phylogenetics, biogeography, life history, and conservation on freshwater crabs, anomurans, prawns, and crayfish. These reflect current research, and are primers for future work and more integrative decapod research.
Comparative transcriptome analysis of Rimicaris sp. reveals novel molecular features associated with survival in deep-sea hydrothermal vent
2017
Shrimp of the family Alvinocarididae are the predominant megafauna of deep-sea hydrothermal vents. However, genome information on this family is currently unavailable. In the present study, by employing Illumina sequencing, we performed the first
de novo
transcriptome analysis of the gills of the shrimp
Rimicaris
sp. from the hydrothermal vent in Desmos, Manus Basin. The analysis was conducted in a comparative manner with the shrimp taken directly from the vent (GR samples) and the shrimp that had been maintained for ten days under normal laboratory condition (mGR samples). Among the 128,938 unigenes identified, a large number of differentially expressed genes (DEGs) between the GR and mGR samples were detected, including 2365 and 1607 genes significantly upregulated and downregulated, respectively, in GR. The DEGs covered diverse functional categories. Most of the DEGs associated with immunity were downregulated in GR, while most of the DEGs associated with sulfur metabolism and detoxification were upregulated in GR. These results provide the first comprehensive transcriptomic resource for hydrothermal vent
Rimicaris
and revealed varied categories of genes likely involved in deep-sea survival.
Journal Article
Phylogenetics reveals the crustacean order Amphionidacea to be larval shrimps (Decapoda: Caridea)
by
Yang, C
,
Chu, K
,
Landeira, J
in
240114 Taxonomía animal
,
240119 Zoología marina
,
631/181/2479
2015
We present evidence that the single representative of the crustacean order Amphionidacea is a decapod shrimp and not a distinct order. After reviewing available morphological evidence, it is concluded that
Amphionides
is a larval form, but with an as yet unknown parentage. Although the most likely adult form is in the family Pandalidae, the limited molecular data available cannot fully resolve its affinity. We therefore propose to treat
Amphionides reynaudii
as
incertae sedis
within Caridea, rather than a separate family. In view of the large scale, tropical and subtropical distribution of the taxon, the possibility is discussed that
Amphionides
is more likely to be a composite taxon at generic level, rather than larvae of a single shrimp species.
Journal Article
Cretaceous and Eocene decapod crustaceans from Southern Vancouver Island, British Columbia, Canada
2003,2002
A large collection of fossil decapod crustaceans from Cretaceous and Eocene rocks of Vancouver Island, British Columbia, Canada, has yielded a remarkably diverse fauna. The Cretaceous decapod fauna, including previously described and new taxa, contains 17 genera in 14 families, represented by as many as 22 species. The Eocene fauna is less robust, with 7 species and 6 genera in 6 families. This publication includes one new family; three new genera; eight new species; and nine new combinations.
Panmixia in a fragmented and unstable environment: the hydrothermal shrimp Rimicaris exoculata disperses extensively along the Mid-Atlantic ridge
by
ARNAUD-HAOND, Sophie
,
Serrão, Ester
,
Teixeira, Sara
in
Animals
,
Biological evolution
,
Biology
2012
Dispersal plays a fundamental role in the evolution and persistence of species, and especially for species inhabiting extreme, ephemeral and highly fragmented habitats as hydrothermal vents. The Mid-Atlantic Ridge endemic shrimp species Rimicaris exoculata was studied using microsatellite markers to infer connectivity along the 7100-Km range encompassing the sampled sites. Astonishingly, no genetic differentiation was found between individuals from the different geographic origins, supporting a scenario of widespread large-scale dispersal despite the habitat distance and fragmentation. We hypothesize that delayed metamorphosis associated to temperature differences or even active directed migration dependent on physical and/or chemical stimuli could explain these results and warrant further studies on adaptation and dispersal mechanisms.
Journal Article
Local Endemism within the Western Ghats-Sri Lanka Biodiversity Hotspot
by
Gower, David J.
,
Meegaskumbura, Madhava
,
Milinkovitch, Michel C.
in
Algorithms
,
Amphibians - anatomy & histology
,
Amphibians - classification
2004
The apparent biotic affinities between the mainland and the island in the Western Ghats-Sri Lanka biodiversity hotspot have been interpreted as the result of frequent migrations during recent periods of low sea level. We show, using molecular phylogenies of two invertebrate and four vertebrate groups, that biotic interchange between these areas has been much more limited than hitherto assumed. Despite several extended periods of land connection during the past 500,000 years, Sri Lanka has maintained a fauna that is largely distinct from that of the Indian mainland. Future conservation programs for the subcontinent should take into account such patterns of local endemism at the finest scale at which they may occur.
Journal Article
First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics
2015
In this study, we first described the complete mitochondrial genome for the red crab (
Charybdis feriata
), elucidated its phylogenetic relationship among 20 species within Decapoda and estimated the population genetic diversity. The mitochondrial genome was 15,660 bp in size and encoded 13 protein-coding genes, 22 transfer RNA (tRNA) genes and two ribosomal RNA genes. The gene arrangement of the mitochondrial genome was the same as that of its sister species,
C. japonica
. Phylogenomic analysis suggested that genus
Charybdis
should be classified into subfamily Portuninae but not into subfamily Thalamitinae. Moreover, a total of 33 haplotypes of complete cytochrome
c
oxidase subunit I gene were defined in 70 individuals of
C. feriata
derived from three localities. Haplotype diversity and nucleotide diversity values among three localities indicated a high level of genetic diversity in
C. feriata
. AMOVA analysis suggested a low level of genetic differentiation among the three localities (
F
ST
= 0.0023,
P
> 0.05). Neutrality tests and mismatch analysis revealed that
C. feriata
might have undergone a population expansion event that possibly occurred in the last 61,498 to 43,814 years. This study should be helpful to better understand the evolutionary status and population genetic diversity of
C. feriata
and related species.
Journal Article