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result(s) for
"Ecologic niche model"
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Determination of dengue high-risk areas in the Philippines: a kernel density estimation, inverse distance weighting, and ecological niche modeling
by
Olana, Kenny Oriel A.
,
Thongprachum, Aksara
,
Poprom, Napaphat
in
Aedes - virology
,
Biomedical and Life Sciences
,
Biomedicine
2025
Background
Dengue is an acute infectious tropical disease that poses a significant public health burden in the Philippines; however, studies employing spatial distribution modeling and ecological approaches to analyze dengue occurrence data remain limited. This study aims to determine the high-risk areas suitable for dengue occurrence and its determinants in the Philippines.
Methods
Dengue case data from 2017 to 2024 were analyzed using kernel density estimation (KDE) and inverse distance weighting (IDW) spatial interpolation to characterize spatial intensity and estimate incidence in unsampled areas. An ecological niche model was developed using maximum entropy modeling, implemented through the MaxEnt software, with climatic, environmental, and socioeconomic predictors. Model performance was evaluated using the area under the curve (AUC), and predictor importance was assessed using jackknife testing.
Results
Results show highest intensity in 2019 and consistent high case density in the National Capital Region (NCR). Meanwhile, high predicted incidence rates were consistently exhibited in northern Luzon. The maximum entropy model had a strong performance in predicting the suitable areas for dengue with a mean area under curve (AUC) of 0.847. Nighttime lights (32.3%), land cover (31.1%), and population density (9.4%) significantly contributed to the model. The NCR was found to be a high-risk suitable area for dengue occurrence along with some parts of other provinces.
Conclusions
This study represents the first application of ecological niche modeling to dengue in the Philippines. The integration of KDE, IDW, and maximum entropy model provides a robust framework for identifying high-risk areas and key determinants, emphasizing the role of urbanization in dengue distribution. These findings are valuable to authorities for an informed risk-based surveillance, genotype-specific monitoring, and decision-making for geospatially targeted disease risk management.
Graphical Abstract
Journal Article
Ecological niches and geographic distributions
by
Enrique Martínez-Meyer
,
Richard G. Pearson
,
Miguel Nakamura
in
Algorithm
,
American Museum of Natural History
,
Bastian
2011,2012
This book provides a first synthetic view of an emerging area of ecology and biogeography, linking individual- and population-level processes to geographic distributions and biodiversity patterns. Problems in evolutionary ecology, macroecology, and biogeography are illuminated by this integrative view. The book focuses on correlative approaches known as ecological niche modeling, species distribution modeling, or habitat suitability modeling, which use associations between known occurrences of species and environmental variables to identify environmental conditions under which populations can be maintained. The spatial distribution of environments suitable for the species can then be estimated: a potential distribution for the species. This approach has broad applicability to ecology, evolution, biogeography, and conservation biology, as well as to understanding the geographic potential of invasive species and infectious diseases, and the biological implications of climate change.
The authors lay out conceptual foundations and general principles for understanding and interpreting species distributions with respect to geography and environment. Focus is on development of niche models. While serving as a guide for students and researchers, the book also provides a theoretical framework to support future progress in the field.
Shifts in potential geographical distribution of Pterocarya stenoptera under climate change scenarios in China
2020
Climate change poses a serious threat to biodiversity. Predicting the effects of climate change on the distribution of a species' habitat can help humans address the potential threats which may change the scope and distribution of species. Pterocarya stenoptera is a common fast‐growing tree species often used in the ecological restoration of riverbanks and alpine forests in central and eastern China. Until now, the characteristics of the distribution of this species' habitat are poorly known as are the environmental factors that influence its preferred habitat. In the present study, the Maximum Entropy Modeling (Maxent) algorithm and the Genetic Algorithm for Ruleset Production (GARP) were used to establish the models for the potential distribution of this species by selecting 236 sites with known occurrences and 14 environmental variables. The results indicate that both models have good predictive power. Minimum temperature of coldest month (Bio6), mean temperature of warmest quarter (Bio10), annual precipitation (Bio12), and precipitation of driest month (Bio14) were important environmental variables influencing the prediction of the Maxent model. According to the models, the temperate and subtropical regions of eastern China had high environmental suitability for this species, where the species had been recorded. Under each climate change scenario, climatic suitability of the existing range of this species increased, and its climatic niche expanded geographically to the north and higher elevation. GARP predicted a more conservative expansion. The projected spatial and temporal patterns of P. stenoptera can provide reference for the development of forest management and protection strategies. Minimum temperature of coldest month (Bio6), mean temperature of warmest quarter (Bio10), annual precipitation (Bio12), and precipitation of driest month (Bio14) were important environmental variables influencing the prediction of the Maxent model. Under each climate change scenario, climatic suitability of the existing range of this species increased, and its climatic niche expanded geographically toward farther north and higher elevation. The GARP predicted a more conservative expansion.
Journal Article
Distributional potential of the Triatoma brasiliensis species complex at present and under scenarios of future climate conditions
by
Almeida, Carlos Eduardo
,
Costa, Jane
,
Peterson, A Townsend
in
algorithms
,
Analysis
,
Animal Distribution
2014
BACKGROUND: The Triatoma brasiliensis complex is a monophyletic group, comprising three species, one of which includes two subspecific taxa, distributed across 12 Brazilian states, in the caatinga and cerrado biomes. Members of the complex are diverse in terms of epidemiological importance, morphology, biology, ecology, and genetics. Triatoma b. brasiliensis is the most disease-relevant member of the complex in terms of epidemiology, extensive distribution, broad feeding preferences, broad ecological distribution, and high rates of infection with Trypanosoma cruzi; consequently, it is considered the principal vector of Chagas disease in northeastern Brazil. METHODS: We used ecological niche models to estimate potential distributions of all members of the complex, and evaluated the potential for suitable adjacent areas to be colonized; we also present first evaluations of potential for climate change-mediated distributional shifts. Models were developed using the GARP and Maxent algorithms. RESULTS: Models for three members of the complex (T. b. brasiliensis, N = 332; T. b. macromelasoma, N = 35; and T. juazeirensis, N = 78) had significant distributional predictivity; however, models for T. sherlocki and T. melanica, both with very small sample sizes (N = 7), did not yield predictions that performed better than random. Model projections onto future-climate scenarios indicated little broad-scale potential for change in the potential distribution of the complex through 2050. CONCLUSIONS: This study suggests that T. b. brasiliensis is the member of the complex with the greatest distributional potential to colonize new areas: overall; however, the distribution of the complex appears relatively stable. These analyses offer key information to guide proactive monitoring and remediation activities to reduce risk of Chagas disease transmission.
Journal Article
Ecological niche modeling of rabies in the changing Arctic of Alaska
by
Magnuson, Emily Elizabeth
,
Huettmann, Falk
,
Hueffer, Karsten
in
Alaska
,
Alaska - epidemiology
,
Algorithms
2017
Background
Rabies is a disease of global significance including in the circumpolar Arctic. In Alaska enzootic rabies persist in northern and western coastal areas. Only sporadic cases have occurred in areas outside of the regions considered enzootic for the virus, such as the interior of the state and urbanized regions.
Results
Here we examine the distribution of diagnosed rabies cases in Alaska, explicit in space and time. We use a geographic information system (GIS), 20 environmental data layers and provide a quantitative non-parsimonious estimate of the predicted ecological niche, based on data mining, machine learning and open access data. We identify ecological correlates and possible drivers that determine the ecological niche of rabies virus in Alaska. More specifically, our models show that rabies cases are closely associated with human infrastructure, and reveal an ecological niche in remote northern wilderness areas. Furthermore a model utilizing climate modeling suggests a reduction of the current ecological niche for detection of rabies virus in Alaska, a state that is disproportionately affected by a changing climate.
Conclusions
Our results may help to better inform public health decisions in the future and guide further studies on individual drivers of rabies distribution in the Arctic.
Journal Article
Climate-based risk models for Fasciola hepatica in Colombia
by
Valencia-López, Natalia
,
Velásquez, Luz E.
,
Gómez Carmona, Catalina
in
Animals
,
Cattle
,
Climate
2012
A predictive Fasciola hepatica model, based on the growing degree day-water budget (GDD-WB) concept and the known biological requirements of the parasite, was developed within a geographical information system (GIS) in Colombia. Climate-based forecast index (CFI) values were calculated and represented in a national-scale, climate grid (18 x 18 km) using ArcGIS 9.3. A mask overlay was used to exclude unsuitable areas where mean annual temperature exceeded 25 °C, the upper threshold for development and propagation of the F. hepatica life cycle. The model was then validated and further developed by studies limited to one department in northwest Colombia. F. hepatica prevalence data was obtained from a 2008-2010 survey in 10 municipalities of 6,016 dairy cattle at 673 herd study sites, for which global positioning system coordinates were recorded. The CFI map results were compared to F. hepatica environmental risk models for the survey data points that had over 5% prevalence (231 of the 673 sites) at the 1 km2 scale using two independent approaches: (i) a GIS map query based on satellite data parameters including elevation, enhanced vegetation index and land surface temperature day-night difference; and (ii) an ecological niche model (MaxEnt), for which geographic point coordinates of F. hepatica survey farms were used with BioClim data as environmental variables to develop a probability map. The predicted risk pattern of both approaches was similar to that seen in the forecast index grid. The temporal risk, evaluated by the monthly CFIs and a daily GDD-WB forecast software for 2007 and 2008, revealed a major July-August to January transmission period with considerable inter-annual differences.
Journal Article
Experimental verification of ecological niche modeling in a heterogeneous environment
by
McKay, John K.
,
Wright, Jessica W.
,
Lau, Jennifer A.
in
abiotic stress
,
Animal and plant ecology
,
Animal, plant and microbial ecology
2006
The current range of ecological habitats occupied by a species reflects a combination of the ecological tolerance of the species, dispersal limitation, and competition. Whether the current distribution of a species accurately reflects its niche has important consequences for the role of ecological niche modeling in predicting changes in species ranges as the result of biological invasions and climate change. We employed a detailed data set of species occurrence and spatial variation in biotic and abiotic attributes to model the niche of a native California annual plant, Collinsia sparsiflora. We tested the robustness of our model for both the realized and fundamental niche by planting seeds collected from four populations, representing two ecotypes, into plots that fully represented the five-dimensional niche space described by our model. The model successfully predicted which habitats allowed for C. sparsiflora persistence, but only for one of the two source ecotypes. Our results show that substantial niche divergence has occurred in our sample of four study populations, illustrating the importance of adequately sampling and describing within-species variation in niche modeling.
Journal Article
INVASIONES BIOLÓGICAS EN AGROECOSISTEMAS DE ECUADOR CONTINENTAL: NICHO ECOLÓGICO DE ESPECIES EXÓTICAS Y CULTIVOS AGRÍCOLAS BAJO RIESGO
by
Zambrano-Mero, Génesis Jahaira
,
Muñoz Zambrano, Karen Tatiana
,
Coveña-Rosado, Alex Adrian
in
Agricultura
,
Agricultural ecosystems
,
Algorithms
2021
En Ecuador las especies exóticas invasoras (EEI) provocan consecuencias negativas en los aspectos ecológicos, económicos y de seguridad alimentaria. Los agroecosistemas hacen parte de los sectores productivos a nivel mundial, pero son vulnerables a sufrir invasiones biológicas por la constante actividad humana y por el traslado de vegetación, tierra y semillas, por lo que deben ser constantemente monitoreados, pues desempeñan un papel importante en la economía al ser fuente de empleo. El objetivo de esta investigación fue evaluar la influencia potencial de las EEI sobre los agroecosistemas de Ecuador continental a través del modelado del nicho ecológico. Se usó como método de modelación el algoritmo de máxima entropía y se emplearon los registros de presencia de seis especies de plantas y cuatro de insectos en sus regiones nativas y en zonas invadidas a nivel mundial. Los registros provienen de Global Biodiversity Information Facility y de Tropicos. Como variables explicativas se emplearon 19 variables bioclimáticas y seis variables de vegetación. Se obtuvieron los mapas de distribución geográfica potencial, las áreas de superposición de la distribución de las especies y la delimitación de las zonas de mayor riesgo. Se determinó que las condiciones ambientales de las regiones Sierra y Amazónica son idóneas para una posible invasión de seis y siete especies. Además, más del 50 % de la cobertura agropecuaria del país podría ser afectada por las especies Wasmannia rochai, Spondias purpurea L., Lissachatina fulica y Conium maculatum L., siendo los cultivos de ciclo corto los más vulnerables a la invasión por estas especies.
Journal Article