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Rat hepatitis E virus (ratHEV-C1) is a newly zoonotic and globally distributed virus of increasing public health concern. Although rats of the genus Rattus are the main reservoir of this emerging virus, the role of other small mammals in the epidemiology of ratHEV-C1 in Europe is unknown as large-scale survey studies specifically assessing the circulation of ratHEV-C1 in these species have not yet been conducted. In this study, we examined active ratHEV-C1 infection in 514 animals from seven different small mammal species sampled throughout Spain. The presence of viral RNA was evaluated for ratHEV-C1 infection using RT-qPCRs in liver tissue. Sequencing and analysis of ratHEV-C1 shedding in faeces were carried out in positive animals. Viral RNA was detected in 15 individuals (mean Ct value: 34.5), supposing a frequency of 2.9% (95% CI: 1.8–4.8). We confirmed ratHEV infection in house mice (14.5%; 11/76), common voles (0.7%; 2/288) and garden dormice (25.0%; 2/8) and viral shedding in faeces in 36.4% (4/11) of positive house mice. Infected animals were detected in urban areas, small ruminant farms and rural areas throughout Spain. Our sequences showed a considerable genetic diversity, and they were closely related with ratHEV-C1 strains detected in human and rats from Spain, Germany and Hungary. Our study confirms that ratHEV is not limited to Rattus genus, identifying other rodents’ species as potential host of ratHEV-C1 in Europe. Our results highlight the importance of continued surveillance in animals to fully understand the dynamics of ratHEV-C1 and its impact on public health.

Background Torpor is an energy saving strategy achieved by substantial reductions of metabolic rate and body temperature that enables animals to survive periods of low resource availability. During hibernation (multiday torpor), the frequency of periodic rewarming—characterised by high levels of oxidative stress—is associated with shortening of telomeres, a marker of somatic maintenance. Objectives In this study, we determined the impact of ambient temperature on feeding behaviour and telomere dynamics in hibernating garden dormice ( Eliomys quercinus ) over winter. This obligate hibernator prepares for hibernation by accumulating fat stores but can also feed during hibernation. Methodology Food intake, torpor pattern, changes in telomere length, and body mass change were assessed in animals housed at experimentally controlled temperatures of either 14 °C (i.e., a mild winter) or 3 °C (i.e., a cold winter) over 6 months. Results When hibernating at 14 °C, dormice experienced 1.7-fold more frequent and 2.4-fold longer inter-bout euthermia, and spent significantly less time torpid, compared to animals hibernating at 3 °C. Higher food intake enabled individuals to compensate for increased energetic costs when hibernating at milder temperatures (14 °C vs. 3 °C), to buffer body mass loss and thus increase winter survival. Interestingly, we observed a significant increase of telomere length over the entire hibernation period, irrespective of temperature treatment. Conclusion We conclude that higher temperatures during winter, if associated with sufficient food availability, can have a positive effect on the individual’s energy balance and somatic maintenance. These results suggest that winter food availability might be a crucial determinant for the survival of the garden dormouse in the context of ever-increasing environmental temperatures.

Hibernation is a period of metabolic suppression utilized by many small and large mammal species to survive during winter periods. As the underlying cellular and molecular mechanisms remain incompletely understood, our study aimed to determine whether skeletal muscle myosin and its metabolic efficiency undergo alterations during hibernation to optimize energy utilization. We isolated muscle fibers from small hibernators, Ictidomys tridecemlineatus and Eliomys quercinus and larger hibernators, Ursus arctos and Ursus americanus . We then conducted loaded Mant-ATP chase experiments alongside X-ray diffraction to measure resting myosin dynamics and its ATP demand. In parallel, we performed multiple proteomics analyses. Our results showed a preservation of myosin structure in U. arctos and U. americanus during hibernation, whilst in I. tridecemlineatus and E. quercinus , changes in myosin metabolic states during torpor unexpectedly led to higher levels in energy expenditure of type II, fast-twitch muscle fibers at ambient lab temperatures (20 °C). Upon repeating loaded Mant-ATP chase experiments at 8 °C (near the body temperature of torpid animals), we found that myosin ATP consumption in type II muscle fibers was reduced by 77–107% during torpor compared to active periods. Additionally, we observed Myh2 hyper-phosphorylation during torpor in I. tridecemilineatus , which was predicted to stabilize the myosin molecule. This may act as a potential molecular mechanism mitigating myosin-associated increases in skeletal muscle energy expenditure during periods of torpor in response to cold exposure. Altogether, we demonstrate that resting myosin is altered in hibernating mammals, contributing to significant changes to the ATP consumption of skeletal muscle. Additionally, we observe that it is further altered in response to cold exposure and highlight myosin as a potentially contributor to skeletal muscle non-shivering thermogenesis. Many animals use hibernation as a tactic to survive harsh winters. During this dormant, inactive state, animals reduce or limit body processes, such as heart rate and body temperature, to minimise their energy use. To conserve energy during hibernation, animals can use different approaches. For example, garden dormice undergo periodic states of extremely low core temperatures (down to 4–8 o C); whereas Eurasian brown bears see milder temperature drops (down to 23–25 o C). An important organ that changes during hibernation is skeletal muscle. Skeletal muscle typically uses large amounts of energy, making up around 50% of body mass. To survive, hibernating animals must change how their skeletal muscle uses energy. Traditionally, active myosin – a protein found in muscles that helps muscles to contract – was thought to be responsible for most of the energy use by skeletal muscle. But, more recently, resting myosin has also been found to use energy when muscles are relaxed. Lewis et al. studied myosin and skeletal muscle energy use changes during hibernation and whether they could impact the metabolism of hibernating animals. Lewis et al. assessed myosin changes in muscle samples from squirrels, dormice and bears during hibernation and during activity. Experiments showed changes in resting myosin in squirrels and dormice (whose temperature drops to 4–8 o C during hibernation) but not in bears. Further analysis revealed that cooling samples from non-hibernating muscle to 4–8 o C increased energy use in resting myosin, thereby generating heat. However, no increase in energy use was found after cooling hibernating muscle samples to 4–8 o C. This suggest that resting myosin generates heat at cool temperatures – a mechanism that is switched off in hibernating animals to allow them to cool their body temperature. These findings reveal key insights into how animals conserve energy during hibernation. In addition, the results show that myosin regulates energy use in skeletal muscles, which indicates myosin may be a potential drug target in metabolic diseases, such as obesity.

Torpor is thought to slow age-related processes and to sustain growth and fattening of young individuals. Energy allocation into these processes represents a challenge for juveniles, especially for those born late in the season. We tested the hypothesis that late-born juvenile garden dormice (Eliomys quercinus) fed ad libitum (‘AL’, n = 9) or intermittently fasted (‘IF’, n = 9) use short torpor bouts to enhance growth and fat accumulation to survive winter. IF juveniles displayed more frequent and longer torpor bouts, compared with AL individuals before hibernation. Torpor frequency correlated negatively with energy expenditure and water turnover. Hence, IF juveniles gained mass at the same rate, reached similar pre-hibernation fattening and displayed identical hibernating patterns and mass losses as AL animals. We found no group differences in relative telomere length (RTL), an indicator of ageing, during the period of highest summer mass gain, despite greater torpor use by IF juveniles. Percentage change in RTL was negatively associated with mean and total euthermic durations among all individuals during hibernation. We conclude that torpor use promotes fattening in late-born juvenile dormice prior to hibernation. Furthermore, we provided the first evidence for a functional link between time spent in euthermy and ageing processes over winter.

Factors for initiating hibernation are unknown, but the condition shares some metabolic similarities with consciousness/sleep, which has been associated with n-3 fatty acids in humans. We investigated plasma phospholipid fatty acid profiles during hibernation and summer in freeranging brown bears (Ursus arctos) and in captive garden dormice (Eliomys quercinus) contrasting in their hibernation patterns. The dormice received three different dietary fatty acid concentrations of linoleic acid (LA) (19%, 36% and 53%), with correspondingly decreased alphalinolenic acid (ALA) (32%, 17% and 1.4%). Saturated and monounsaturated fatty acids showed small differences between summer and hibernation in both species. The dormice diet influenced n-6 fatty acids and eicosapentaenoic acid (EPA) concentrations in plasma phospholipids. Consistent differences between summer and hibernation in bears and dormice were decreased ALA and EPA and marked increase of n-3 docosapentaenoic acid and a minor increase of docosahexaenoic acid in parallel with several hundred percent increase of the activity index of elongase ELOVL2 transforming C20-22 fatty acids. The highest LA supply was unexpectantly associated with the highest transformation of the n-3 fatty acids. Similar fatty acid patterns in two contrasting hibernating species indicates a link to the hibernation phenotype and requires further studies in relation to consciousness and metabolism

Background The garden dormouse ( Eliomys quercinus ) has experienced a significant population decline across Europe in recent decades. While habitat loss and climate change are often cited as primary factors, pathogen exposure, either to novel or to previously known, may play a role in such a decline. This study aimed to investigate the presence of polyomaviruses in garden dormice, given that these viruses are highly prevalent and can cause disease, particularly in immunocompromised individuals. Methods The carcasses of garden dormice ( n  = 89) were collected throughout Germany. Kidney samples were tested for the presence of polyomavirus DNA using nested degenerate and specific diagnostic PCRs. Seroprevalence was assessed from chest cavity fluid samples through an enzyme-linked immunosorbent assay using polyomavirus VP1 virus-like particles produced in yeast. Results A new polyomavirus, related to chimpanzee ( Pan troglodytes ) polyomaviruses 4 and 5 and human Merkel cell polyomavirus, was identified in the garden dormouse. Two 5,380 bp-length complete viral genomes were sequenced from dormice kidney samples (sequences PQ246041 and PQ246042). Genes encoding the putative structural proteins VP1, VP2, and VP3, as well as the Large, Middle, and small T antigens, containing conserved functional domains were identified. Polyomavirus DNA was detected in 2 of 74 dormice (2.7%, 95% confidence interval: 0-6.4%) through PCR, while 12 of 69 animals (17.4%, 95% confidence interval: 8.4-26.3%) tested positive for polyomavirus-specific antibodies. Conclusions In conclusion, here we describe a novel polyomavirus in the garden dormouse with molecular and serological detection. Pairwise sequence comparison and phylogenetic analysis suggest that this novel virus may represent a novel species within the genus Alphapolyomavirus . Future work should examine if this virus is garden dormouse-specific and whether it is associated with disease in dormice.

Obtaining biological and behavioural data on wild animals in the field remains a challenging task. Data collection is either very labour-intensive or sometimes even proves impossible without special technical devices. This is especially true for small nocturnal mammals like the endangered garden dormouse (Eliomys quercinus). Here, we present a new device for automated small mammal monitoring, called DoMoS (Dormouse Monitoring System). It integrates the collection of individual hair samples for DNA analysis, a scale to measure body mass, and a camera trap to monitor activity. During a first field test with garden dormice, data on body mass and activity patterns and hair samples have been successfully collected. The system was designed as an open-source project and can thus be replicated and adjusted to other species’ monitoring needs and research questions. The DoMoS enables the study of various data, including the collection of DNA samples, without capturing the target species. Automatic data collection reduces stress for animals and researchers.

Biodiversity is decreasing worldwide, and early indicators are needed to identify endangered populations before they start to decline in abundance. In mammals, body mass (BM) is regarded as an indicator of fitness, and its loss is used as an early warning signal preceding population decline. The garden dormouse (Eliomys quercinus, Gliridae, BM: 60–110 g) is a small mammalian hibernator that has disappeared from over 50% of its former range in the last decades. The aim of this study was to investigate whether garden dormice from a presumably thriving and stable population already show early warning signals, which may precede a population decline. We therefore conducted capture‐mark‐recapture studies during 2003–2005 (Period 1) and 2018–2021 (Period 2) in the Northern Black Forest, one of its last natural distribution areas in Germany. We collected fecal samples, measured BM, and tibia length as a proxy for size and age. Results revealed that in Period 2 adult dormice had a significantly lower (12%) pre‐hibernation BM, corrected for body size, and juveniles showed a significantly lower BM gain after weaning than nearly two decades ago. Fecal samples collected in Period 2 showed that arthropods represented the main food residues in fecal samples during juvenile growth and pre‐hibernation fattening. Ambient temperature during hibernation showed no correlation with BM at emergence. We could not detect a phenological time shift in reproduction; however, we found only one birth peak in Period 2, compared with two birth peaks in Period 1. Observed changes in BM and reproduction pattern represent early warning signals, as they point to an insufficient availability of high‐quality food, which prevents dormice from meeting their nutritional requirements, with potentially serious consequences for their reproductive success and survival. As arthropods are the dominant food resource, their decline may at least partly explain this phenomenon. In this study, we investigated the threatened garden dormouse (Eliomys quercinus) in one of its last natural distribution areas in Germany. We found a decrease in pre‐hibernation body mass, reduced juvenile growth, and a change in reproductive pattern compared with 20 years ago, which is likely to affect their survival and reproductive success. These changes are probably caused by the decline of arthropods, which were found to be the main food resource during these critical life history stages.

For hibernators, being born late in the active season may have important effects on growth and fattening, hence on winter survival and reproduction. This study investigated differences in growth, fattening, energetic responses, winter survival and fecundity between early-born (‘EB’) and late-born (‘LB’) juvenile garden dormice (Eliomys quercinus). LB juveniles grew and gained mass twice as fast as EB individuals. Torpor use was low during intensive growth, that are, first weeks of body mass gain, but increased during pre-hibernation fattening. LB juveniles showed higher torpor use, reached similar body sizes but lower fat content than EB individuals before hibernation. Finally, LB individuals showed similar patterns of hibernation, but higher proportion of breeders during the following year than EB dormice. These results suggest that torpor is incompatible with growth but promotes fattening and consolidates pre-hibernation fat depots. In garden dormice, being born late in the reproductive season is associated with a fast life history. Garden dormice are small rodents which are common in European woodlands. They were historically widespread from Portugal in the west to the Urals (Russia) in the east. However they are now largely confined to western Europe with north-eastern and eastern populations having become scattered and fragmented. During the course of a year in northern and central Europe, they make the most of the warm season to fatten up and to produce up to two litters of youngsters. When winter comes, dormice enter hibernation, sometimes for more than six months. During this time, they must rely on their fat reserves to survive. Every year, the young from the second litter have less time to prepare for the winter compared to their siblings born earlier in the season. So, how do they still manage to get ready on time for hibernation? Here, Mahlert et al. studied captive pups from first and second litters for their first year, following them as they grew up, entered and then emerged from their first hibernation. The late-born individuals developed nearly twice as fast as the ones born early in the season. In fact, both reached a similar body size, but the second-litter dormice had less fat reserves. Just before their first winter, both early- and late-born animals increasingly started to enter torpor – short and daily resting-like periods when the body slows down. Torpor rarely happens when animals are growing (because growth requires a warm body), but it is useful to help storing and consolidating fat before the cold months. Late-born dormice experienced more torpor on average than their first-litter peers. Both groups survived their first hibernation; but when they emerged, late-born individuals were more likely to reproduce that year. In other words, the dormice which grew quickly might also have sexually matured earlier. This could suggest that animals born later in the season have a faster life history: they grow rapidly, reproduce quickly but may die younger than their early-born peers. Mahlert et al. highlighted how early-life events can shape the course of animals’ existences and influence how their bodies operate. It remains to be examined how these circumstances may affect the individuals in the longer term, and perhaps even their descendants.

Torpor or heterothermy is an energy‐saving mechanism used by endotherms to overcome harsh environmental conditions. During winter, the garden dormouse ( Eliomys quercinus ) hibernates with multiday torpor bouts and body temperatures of a few degrees Celsius, interrupted by brief euthermic phases. This study investigates gene expression within the hypothalamus, the key brain area controlling energy balance, adding information on differential gene expression potentially relevant to orchestrate torpor. A de novo assembled transcriptome of the hypothalamus was generated from garden dormice hibernating under constant darkness without food and water at 5 °C. Samples were collected during early torpor, late torpor, and interbout arousal. During early torpor, 765 genes were differentially expressed as compared with interbout arousal. Twenty‐seven pathways were over‐represented, including pathways related to hemostasis, extracellular matrix organization, and signaling of small molecules. Only 82 genes were found to be differentially expressed between early and late torpor, and no pathways were over‐represented. During late torpor, 924 genes were differentially expressed relative to interbout arousal. Despite the high number of differentially expressed genes, only 10 pathways were over‐represented. Of these, eight were also observed to be over‐represented when comparing early torpor and interbout arousal. Our results are largely consistent with previous findings in other heterotherms. The addition of a transcriptome of a novel species may help to identify species‐specific and overarching torpor mechanisms through future species comparisons.