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Unlike most other fungi, molds of the genus Trichoderma (Hypocreales, Ascomycota) are aggressive parasites of other fungi and efficient decomposers of plant biomass. Although nutritional shifts are common among hypocrealean fungi, there are no examples of such broad substrate versatility as that observed in Trichoderma. A phylogenomic analysis of 23 hypocrealean fungi (including nine Trichoderma spp. and the related Escovopsis weberi) revealed that the genus Trichoderma has evolved from an ancestor with limited cellulolytic capability that fed on either fungi or arthropods. The evolutionary analysis of Trichoderma genes encoding plant cell wall-degrading carbohydrate-active enzymes and auxiliary proteins (pcwdCAZome, 122 gene families) based on a gene tree / species tree reconciliation demonstrated that the formation of the genus was accompanied by an unprecedented extent of lateral gene transfer (LGT). Nearly one-half of the genes in Trichoderma pcwdCAZome (41%) were obtained via LGT from plant-associated filamentous fungi belonging to different classes of Ascomycota, while no LGT was observed from other potential donors. In addition to the ability to feed on unrelated fungi (such as Basidiomycota), we also showed that Trichoderma is capable of endoparasitism on a broad range of Ascomycota, including extant LGT donors. This phenomenon was not observed in E. weberi and rarely in other mycoparasitic hypocrealean fungi. Thus, our study suggests that LGT is linked to the ability of Trichoderma to parasitize taxonomically related fungi (up to adelphoparasitism in strict sense). This may have allowed primarily mycotrophic Trichoderma fungi to evolve into decomposers of plant biomass.

In June 2022, at the XXXII Conference of the Italian Society of Parasitology, the parallels of the main endoparasitic infections of horses and donkeys were discussed. Although these 2 species are genetically different, they can be challenged by a similar range of parasites (i.e. small and large strongyles, and Parascaris spp.). Although equids can demonstrate some level of resilience to parasites, they have quite distinct helminth biodiversity, distribution and intensity among different geographical locations and breeds. Heavily infected donkeys may show fewer clinical signs than horses. Although parasite control is primarily provided to horses, we consider that there may be a risk of drug-resistance parasitic infection through passive infection in donkeys when sharing the same pasture areas. Knowing the possible lack of drug efficacy (<90 or 80%), it is advocated the use of selective treatment for both species based on fecal egg counts. Adult horses should receive treatment when the threshold exceeds 200–500 eggs per gram (EPG) of small strongyles. Moreover, considering that there are no precise indications in donkeys, a value >300 EPG may be a safe recommendation. We have highlighted the main points of the discussion including the dynamics of helminth infections between the 2 species.

Unlike sedentary plant-parasitic nematodes, migratory plant endoparasitic nematodes (MPENs) are unable to establish permanent feeding sites, and all developmental stages (except eggs) can invade and feed on plant tissues and can be easily overlooked because of the unspecific symptoms. They cause numerous economic losses in agriculture, forestry, and horticulture. In order to understand the pathogenetic mechanism of MPENs, here we describe research on functions and host targets focused on currently identified effectors from six MPENs, namely Radopholus similis, Pratylenchus spp., Ditylenchus destructor, Bursaphelenchus xylophilus, Aphelenchoides besseyi, and Hirschmanniella oryzae. This information will provide valuable insights into understanding MPEN effectors and for future fostering advancements in plant protection.

Small ruminants, including sheep and goats, play an important role in the economy of American agriculture. They are susceptible to a variety of diseases that impact animal welfare and production. This study evaluated postmortem data from two different diagnostic laboratories in the state of Tennessee to discern common causes of death of small ruminants that were brought in for necropsy between 2017 to 2021. Data were prepared for analysis by selecting the predominant conditions observed at postmortem examination and risk factors including sex, age, season, and region were included in analysis. The predominant condition seen in both small ruminant species was endoparasitism. In both sheep and goats, female juvenile animals were more likely to be diagnosed with this condition at necropsy during summer months. Abortive diseases were the next most prominent condition diagnosed in both small ruminant species. The majority of these cases were due to an unknown cause and age was a significant risk factor in both sheep and goats. Neurological disorders in goats and pneumonia in sheep were included in the most prevalent diagnoses at postmortem examination with age being a significant risk factor. These findings suggest that many small ruminant deaths are attributed to infectious diseases that have herdwide implications. Producer education could be beneficial to help identify and implement control measures in a timely manner to help minimize production loss associated with common diseases.

Red-eared sliders (RES; Trachemys scripta elegans ) are a globally invasive species that can impact native chelonian populations through resource competition and disease introduction. In Cook County, Illinois, invasive RES co-occur with, and greatly outnumber, a species of conservation priority in the Great Lakes region: the Blanding’s turtle ( Emydoidea blandingii ). This study sampled free-ranging RES in Cook County during spring, summer, and fall in four unique locations to characterize the possible effect of this non-native species on the health of regional, sympatric, aquatic chelonians. RES (n = 242) were captured and sampled for qPCR pathogen detection, clinical pathology, and necropsy from 2018 to 2022. Multiple pathogens were detected, including Mycoplasma spp., multiple adenoviruses, Trachemys herpesvirus 1 (TrHV-1), frog virus 3, human-pathogenic Leptospira spp., Emydomyces testavorans , and Salmonella typhimurium . Mycoplasma spp. prevalence was significantly higher (p < 0.05) at one isolated site with a suspected greater density of turtles. Detection of TrHV-1 was significantly associated with season (p < 0.001), with detections occurring only in spring and fall. For the 28 hematology, plasma biochemistry, and protein electrophoresis analytes assayed, significant and variable associations occurred based on sample year, season, pathogen detection, age, and sex. Population-based reference intervals were created for hematologic, plasma biochemistry, and plasma protein electrophoresis analytes. Common necropsy findings included mild endoparasitism and related vascular lesions such as endarteritis. Notably, qPCR detection of above pathogens was not associated with any gross or histologic lesions indicative of clinically relevant disease. This study indicates that invasive RES in Cook County may be infected with pathogens of concern for co-occurring turtle species, and absence of associated lesions in the RES suggests they likely serve as carrier species for these pathogens. Continued health monitoring of this species is important as interactions with chelonians of conservation priority increase.

Endoparasitism is a major cause of morbidity and mortality in alpacas ( Lama pacos ), with growing emergence of anthelmintic resistance. The purpose of the study was to correlate nematode worm burden and selected host phenotypic characteristics, such as age and weight, with the composition of the intestinal microbiota of adult alpacas. Fecal samples were collected per rectum from 102 healthy adult (2.1–11.2 years) alpacas at 3 separate timepoints (pre- and post-treatment with 8.8 mg/kg oral Levamisole HCL, and 4.6 months later) at a single farm. The profile of the fecal bacterial microbiota was characterized using 16S amplicon sequencing. Serial clinical exams and fecal egg counts were compared using related-samples analyses. The fecal microbiota of identically managed, healthy alpacas was characterized by a high level of temporal stability, as both α and β-diversity significantly correlated between sampling timepoints. Pairwise β-diversity between samples collected at each timepoint was low, ranging from 0.16–0.21 UniFrac distance units. The intensity of strongylid nematode infection (including Haemonchus , Ostertagia , Trichostrongylus ) was only significantly correlated with microbiota composition in samples collected 14 days after treatment with levamisole. Analysis of similarity revealed no clustering of microbiota from anthelmintic responders or non-responders. Alpaca age explained the largest proportion of fecal microbiota variation and was the only consistently significant predictor of fecal microbiota taxonomic composition, by impacting the ratio of relative Bacteroidetes and Firmicutes abundance. Firmicutes, mostly Clostridiales, was the most abundant taxon across all collections.

Endoparasitism by gall-forming insects dramatically alters the plant phenotype by altering growth patterns and modifying plant organs in ways that appear to directly benefit the gall former. Because these morphological and physiological changes are linked to the presence of the insect, the induced phenotype is said to function as an extension of the parasite, albeit by unknown mechanisms. Here we report the gall-forming aphid-like parasite phylloxera, Daktulosphaira vitifoliae, induces stomata on the adaxial surface of grape leaves where stomata typically do not occur. We characterized the function of the phylloxera-induced stomata by tracing transport of assimilated carbon. Because induction of stomata suggests a significant manipulation of primary metabolism, we also characterized the gall transcriptome to infer the level of global reconfiguration of primary metabolism and the subsequent changes in downstream secondary metabolism. Phylloxera feeding induced stomata formation in proximity to the insect and promoted the assimilation and importation of carbon into the gall. Gene expression related to water, nutrient, and mineral transport; glycolysis; and fermentation increased in leaf-gall tissues. This shift from an autotrophic to a heterotrophic profile occurred concurrently with decreased gene expression for nonmevalonate and terpenoid synthesis and increased gene expression in shikimate and phenylpropanoid biosynthesis, secondary metabolite systems that alter defense status in grapes. These functional insect-induced stomata thus comprise part of an extended phenotype, whereby D. vitifoliae globally reprograms grape leaf development to alter patterns of primary metabolism, nutrient mobilization, and defense investment in favor of the galling habit.

In this study, the structure of metazoan endoparasites infracommunities and component community in Erythrolamprus poecilogyrus caesius (Cope, 1862) (Serpentes: Dipsadidae) is presented. From 21 specimens (15 females; 6 males) collected between February 2017 and March 2022 at Ingeniero Juárez, Formosa, Argentina, 90.5% of individuals surveyed (n= 19) were infected with at least one species of metazoan endoparasite. Nine hundred sixty specimens were collected (117 adults; 843 larvae), from 11 taxa. Kalicephalus appendiculatus (Nematoda), Raillietiella furcocerca (Pentastomida), Ophiotaenia joanae, Catadiscus uruguayensis, Opisthogonimus lecithonotus (Platyhelminthes) were found as adults. Larvae identified were Oligacanthorhynchus sp. (Acanthocephala), Physaloptera sp. (Nematoda), Strigea spp. and Alaria sp. (Digenea). Digenea was the richest group (S= 6). Adults were collected in intestines, trachea and esophagus, while larvae were found in mesenteries and body cavity. Ophiotaenia joanae was the most prevalent species (38.1%) and K. appendiculatus had the highest mean abundance (3.7). Considering larvae, Strigea spp. were dominant and Oligacanthorhynchus sp. was subdominant. Between pairs of metazoans, positive and negative covariations were obtained. In general, intensity of metazoan taxa had positive correlation to host weight and body condition but had negative relationships with snout-vent length. Mean infracommunity richness (including larvae and adults) was 4.35 ± 1.27 taxa/host. Richness and diversity were higher in larval infracommunities than those composed by adults. This is the first ecological study of endoparasites in snakes from Argentina. New reports to parasite biodiversity in Dry Chaco were added, also, information about habitat use, diet, and position in trophic webs of host was generated.

Myxozoans are obligate endoparasites that belong to the phylum Cnidaria. Compared with their closest free-living relatives, they have evolved highly simplified body plans and reduced genomes. Kudoa iwatai, for example, has lost upwards of two-thirds of genes thought to have been present in its ancestors. However, little is known about myxozoan genome architecture because of a lack of sufficiently contiguous genome assemblies. This work presents two new Kudoa genomes, one of them near-chromosomal, built entirely from low-coverage long reads from infected fish samples. The results illustrate the potential of using unsupervised learning methods to disentangle sequences from different sources, and facilitate producing genomes from undersampled taxa. Extracting distinct components of chromatin interaction networks allows scaffolds from mixed samples to be assigned to their source genomes. Meanwhile, low-dimensional embeddings of read composition permit targeted assembly of potential parasite reads. Despite drastic changes in genome architecture in the lineage leading to Kudoa and considerable sequence divergence between the two genomes, gene order is highly conserved. Although parasitic cnidarians show rapid protein evolution compared with their free-living relatives, there is limited evidence of less efficient selection. While deleterious substitutions may become fixed at a higher rate, large evolutionary distances between species make robustly analyzing patterns of molecular evolution challenging. These observations highlight the importance of filling in taxonomic gaps, to allow a comprehensive assessment of the impacts of parasitism on genome evolution.

Isolation on culture media followed with macroscopic, microscopic, molecular and phylogenetic analyses and pathogenicity tests allowed us to identify Pythium capillosum to be capable of destroying dagger nematode through endozoic parasitism from ingested oomycete zoospores. Although endoparasitism of free-living nematodes is found to be common among oomycetes in nature, this is the first finding of such occurrence in Bosnia and Herzegovina soils. The obtained results could open the door to future studies for controlling nematodes in an environmentally safe and sustainable way.