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Hybridization and introgression have played important roles in the history of various species, including lineage diversification and the evolution of adaptive traits. Hybridization can accelerate the development of reproductive isolation between diverging species, and thus valuable insight into the evolution of reproductive barrier formation may be gained by studying secondary contact zones. Hedgehogs of the genus Erinaceus, which are insectivores sensitive to changes in climate, are a pioneer model in Pleistocene phylogeography. The present study provides the first genome-wide SNP data regarding the Erinaceus hedgehogs species complex, offering a unique comparison of two secondary contact zones between Erinaceus europaeus and E. roumanicus. Results confirmed diversification of the genus during the Pleistocene period, and detected a new refugial lineage of E. roumanicus outside the Mediterranean basin, most likely in the Ponto-Caspian region. In the Central European zone, the level of hybridization was low, whereas in the Russian-Baltic zone, both species hybridise extensively. Asymmetrical gene flow from E. europaeus to E. roumanicus suggests that reproductive isolation varies according to the direction of the crosses in the hybrid zones. However, no loci with significantly different patterns of introgression were detected. Markedly different pre- and post-zygotic barriers, and thus diverse modes of species boundary maintenance in the two contact zones, likely exist. This pattern is probably a consequence of the different age and thus of the different stage of evolution of reproductive isolating mechanisms in each hybrid zone.

Anaplasma phagocytophilum is an important tick-borne zoonotic agent of human granulocytic anaplasmosis (HGA). In Europe, the Ixodes ticks are the main vector responsible for A. phagocytophilum transmission. A wide range of wild animals is involved in the circulation of this pathogen in the environment. Changes in populations of vertebrates living in different ecosystems impact the ecology of ticks and the epidemiology of tick-borne diseases. In this study, we investigated four species, Western European hedgehog (Erinaceus europaeus), northern white-breasted hedgehog (Erinaceus roumanicus), Eurasian red squirrel (Sciurus vulgaris), and the common blackbird (Turdus merula), to describe their role in the circulation of A. phagocytophilum in urban and periurban ecosystems. Ten different tissues were collected from cadavers of the four species, and blood and ear/skin samples from live blackbirds and hedgehogs. Using qPCR, we detected a high rate of A. phagocytophilum: Western European hedgehogs (96.4%), northern white-breasted hedgehogs (92.9%), Eurasian red squirrels (60%), and common blackbirds (33.8%). In the groEL gene, we found nine genotypes belonging to three ecotypes; seven of the genotypes are associated with HGA symptoms. Our findings underline the role of peridomestic animals in the ecology of A. phagocytophilum and indicate that cadavers are an important source of material for monitoring zoonotic pathogens. Concerning the high prevalence rate, all investigated species play an important role in the circulation of A. phagocytophilum in municipal areas; however, hedgehogs present the greatest anaplasmosis risk for humans. Common blackbirds and squirrels carry different A. phagocytophilum variants some of which are responsible for HGA.

In this study, a novel mammarenavirus (family Arenaviridae) was identified in a hedgehog (family Erinaceidae) in Hungary and genetically characterized. Mecsek Mountains virus (MEMV, OP191655, OP191656) was detected in nine (45%) out of 20 faecal specimens collected from a Northern white-breasted hedgehog (Erinaceus roumanicus). The L-segment proteins (RdRp and Z) and S-segment proteins (NP and GPC) of MEMV had 67.5%/70% and 74.6%/65.6% amino acid sequence identity, respectively, to the corresponding proteins of Alxa virus (species Mammarenavirus alashanense) identified recently in an anal swab from a three-toed jerboa (Dipus sagitta) in China. MEMV is the second known arenavirus endemic in Europe.

By applying second‐generation sequencing technologies to microsatellite genotyping, sequence information is produced which can result in high‐resolution population genetics analysis populations and increased replicability between runs and laboratories. In the present study, we establish an approach to study the genetic structure patterns of two European hedgehog species Erinaceaus europaeus and E. roumanicus. These species are usually associated with human settlements and are good models to study anthropogenic impacts on the genetic diversity of wild populations. The short sequence repeats genotyping by sequence (SSR‐GBS) method presented uses amplicon sequences to determine genotypes for which allelic variants can be defined according to both length and single nucleotide polymorphisms (SNPs). To evaluate whether complete sequence information improved genetic structure definition, we compared this information with datasets based solely on length information. We identified a total of 42 markers which were successfully amplified in both species. Overall, genotyping based on complete sequence information resulted in a higher number of alleles, as well as greater genetic diversity and differentiation between species. Additionally, the structure patterns were slightly clearer with a division between both species and some potential hybrids. There was some degree of genetic structure within species, although only in E. roumanicus was this related to geographical distance. The statistically significant results obtained by SSR‐GBS demonstrate that it is superior to electrophoresis‐based methods for SSR genotyping. Moreover, the greater reproducibility and throughput with lower effort which can be obtained with SSR‐GBS and the possibility to include degraded DNA into the analysis, allow for continued relevance of SSR markers during the genomic era. Microsatellite genotyping based on Illumina MiSeq sequencing recovered genetic structure patterns in the European hedgehog species, Erinaceus europaeus, and E. roumanicus. As main advantages of this approach, sequence information is available allowing allele call based on length variation and on SNPs in the flaking regions, resulting in a higher discriminatory power in the assessment of genetic structure. The applicability of the method considering the high replicability and simplification of laboratory procedure is discussed, and a procedure for bioinformatics for allele call is presented.

The variability of cranial traits of genotyped hedgehogs Erinaceus europaeus and E. roumanicus was studied in the contact zone of Moscow oblast, where both species interbreed, producing viable offspring. Discriminant analysis and principal component analysis showed that the distribution of the genetically pure individuals of E. roumanicus and E. europaeus in the contact zone is close to that of pure allopatric populations. Hedgehogs with a mixed genotype in craniological traits look like E. roumanicus , which correlates with the predominance of the genes of the latter species in their genotypes; in particular, most of them are backcrosses to E. roumanicus . Thus, reliable morphological identification of hedgehogs in the hybridization zone is impossible, since backcrosses to E. roumanicus are extremely close to genetically pure representatives of this species.

Lyme borreliosis (LB), caused by spirochetes of the Borrelia burgdorferi sensu lato (s.l.) complex, is one of the most common vector-borne zoonotic diseases in Europe. Knowledge about the enzootic circulation of Borrelia pathogens between ticks and their vertebrate hosts is epidemiologically important and enables assessment of the health risk for the human population. In our project, we focused on the following vertebrate species: European hedgehog (Erinaceus europaeus), Northern white-breasted hedgehog (E. roumanicus), Eurasian red squirrel (Sciurus vulgaris), and Common blackbird (Turdus merula). The cadavers of accidentally killed animals used in this study constitute an available source of biological material, and we have confirmed its potential for wide monitoring of B. burgdorferi s.l. presence and genospecies diversity in the urban environment. High infection rates (90% for E. erinaceus, 73% for E. roumanicus, 91% for S. vulgaris, and 68% for T. merula) were observed in all four target host species; mixed infections by several genospecies were detected on the level of individuals, as well as in particular tissue samples. These findings show the usefulness of multiple tissue sampling as tool for revealing the occurrence of several genospecies within one animal and the risk of missing particular B. burgdorferi s.l. genospecies when looking in one organ alone.

Purpose Despite increasing interest in hedgehog parasitology across Europe, the endoparasitic fauna of the northern white-breasted hedgehog ( Erinaceus roumanicus ) in Romania remains insufficiently documented. This study aimed to assess the prevalence and diversity of endoparasitic infections and evaluate the influence of age, sex, and habitat on infection patterns. Methods Between March 2021 and June 2022, data and samples were collected from 135 hedgehogs across Romania, primarily from the Bucharest Metropolitan Area (90/135). Coprological analysis was performed on 97 live individuals admitted to a wildlife rehabilitation centre, using a flotation technique with hyper-saturated sodium chloride solution and the Baermann method. Necropsies were conducted on 38 deceased individuals. Parasites were preserved in 70% ethanol and identified using morphological keys. Results Endoparasites were detected in 82.47% (80/97) of hedgehogs examined by coproscopy, with mixed infections in 40.21% (39/97). Six parasite species were identified: Crenosoma striatum (61.86%), Capillaria spp. (23.71%), Eucoleus aerophilus (15.46%), Hymenolepis erinacei (14.43%), Brachylaemus erinacei (2.06%), and Cystoisospora rastegaievae (26.80%). Necropsy revealed a helminth prevalence of 76.3% (29/38), with Physaloptera clausa (55.26%) and Nephridiacanthus major (5.26%) found exclusively post-mortem. Statistical analysis of coprological data showed significantly higher C. striatum prevalence in adults (73.68%) compared to juveniles (31.82%), and in males (71.74%) versus females (52.94%) ( p  < 0.05). Conclusion This study provides the first comprehensive overview of endoparasites in E. roumanicus in Romania, highlighting notable infection rates and species richness. Results emphasize the influence of age and sex on infection trends, the need for zoonotic risk monitoring, and further research on the potential long-term impacts of parasitism on urban hedgehog populations.

Providing descriptive data on parasite diversity and load in sister species is a first step in addressing the role of host-parasite coevolution in the speciation process. In this study we compare the parasite faunas of the closely related hedgehog species Erinaceus europaeus and E. roumanicus from the Czech Republic where both occur in limited sympatry. We examined 109 hedgehogs from 21 localities within this secondary contact zone. Three species of ectoparasites and nine species of endoparasites were recorded. Significantly higher abundances and prevalences were found for Capillaria spp. and Brachylaemus erinacei in E. europaeus compared to E. roumanicus and higher mean infection rates and prevalences for Hymenolepis erinacei, Physaloptera clausa and Nephridiorhynchus major in E. roumanicus compared to E. europaeus. Divergence in the composition of the parasite fauna, except for Capillaria spp., which seem to be very unspecific, may be related to the complicated demography of their hosts connected with Pleistocene climate oscillations and consequent range dynamics. The fact that all parasite species with different abundances in E. europaeus and E. roumanicus belong to intestinal forms indicates a possible diversification of trophic niches between both sister hedgehog species.

The helminth fauna of the Northern white-breasted hedgehog Erinaceus roumanicus was studied in the Republic of Mordovia (Russia) for the first time. In total, 9 species of helminths were found in 23 studied hedgehogs: Trematoda—Isthmiophora melis, Strigea strigis (metacercaria); Cestoda—Hymenolepis erinacei; Nematoda—Aonchotheca erinacei, Physaloptera clausa, Crenosoma striatum, Physocephalus sexalatus (juvenile), Agamospirura minuta (juvenile); and Acanthocephala—Nephridiorhynchus major. Four parasite species (the trematode I. melis, nematodes P. sexalatus, A. minuta, and the acanthocephalan N. major) were found in hedgehogs for the first time in Russia. An overview of the helminth fauna of four species of Erinaceus hedgehogs inhabiting the Palearctic region is given. A total of 54 parasite species were recorded across Erinaceus europaeus, E. roumanicus, E. concolor and E. amurensis: 14 trematodes, 6 cestodes, 27 nematodes, and 7 acanthocephalans. Among all the studied species of hedgehogs, E. europaeus (35 species) and E. roumanicus (36) have the richest helminth faunas. The diversity of the parasite communities of Erinaceus spp. is due to the wide distribution and varied diet of these mammals. Most of the helminths found in hedgehogs are transmitted along trophic chains. Hedgehogs are the final hosts for 39 species of parasites. For 15 helminth species, Erinaceus spp. are paratenic hosts. The majority of the hedgehog’s helminth fauna is formed by host-specific parasites, of which there are 13 species. Most of the hedgehog’s parasites in the Palaearctic are facultative (non-specific) species that parasitize in various vertebrate species. The helminth fauna of Erinaceus hedgehogs is most studied in Russia and Belarus, where 17 species of parasites are found in each country. The comparative analysis of the helminth faunas of Erinaceus spp. from various regions showed, on the one hand, the originality of the helminth fauna of each hedgehog species and, on the other, the similarity of the helminth fauna of these insectivores from various countries of the Palaearctic. These features are caused by similar lifestyles and diet peculiarities of every hedgehog species in various regions of the Palaearctic. A total of 12 of the 54 helminth species found in hedgehogs have medical and veterinary significance as causative agents of dangerous helminthiasis.

Insectivores (Eulypotiphla) are a substantial component of Russian forest ecosystems. The parasites of these animals also form an important part of natural biocenoses and act as one of the factors in the formation of biodiversity. The Mordovia Nature Reserve and National Park “Smolny” are large, forested areas located in the center of European Russia. We studied the helminth fauna of insectivores in these protected areas in 2018–2022. In total, using the method of complete helminthological necropsy, we examined 478 individuals of shrews, moles, and hedgehogs and recorded 34 species of parasitic worms, i.e., 8 trematode, 7 cestode, 1 acanthocephalan, and 18 nematode species. The most diverse helminth fauna was found in Sorex araneus (22 species). The composition of helminths in S. isodon (12), Neomys fodiens (9), Sorex minutus, and Erinaceus roumanicus (8 species each) turned out to be less diverse. The lowest species diversity of helminths was observed in Neomys milleri (3) and Talpae europaea (2 species). Taking into account the newly obtained data, we conducted a review of the helminth diversity in shrews, hedgehogs, and moles in the Middle Volga region. According to our literature data, the helminth fauna of insectivores in this region consists of 52 species, including 14 cestodes, 13 trematodes, 22 nematodes, and 3 acanthocephalans. Most of them belong to the Palearctic faunal complex (36 species). The helminth fauna of insectivores in the studied protected areas was compared with the helminth fauna of micromammals in other areas of the Middle Volga region. Our comparative analysis showed a high and average degree of similarity in the helminth fauna within individual species and genera of Eulipotyphla.