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Iron (Fe) plays a key role in sedimentary diagenetic processes in coastal systems, participating in various redox reactions and influencing the burial of organic carbon. Large amounts of Fe enter the marine environment from boreal river catchments associated with dissolved organic matter (DOM) and as colloidal Fe oxyhydroxides, principally ferrihydrite. However, the fate of this Fe pool in estuarine sediments has not been extensively studied. Here we show that flocculation processes along a salinity gradient in an estuary of the northern Baltic Sea efficiently transfer Fe and OM from the dissolved phase into particulate material that accumulates in the sediments. Flocculation of Fe and OM is partially decoupled. This is likely due to the presence of discrete colloidal ferrihydrite in the freshwater Fe pool, which responds differently from DOM to estuarine mixing. Further decoupling of Fe from OM occurs during sedimentation. While we observe a clear decline with distance offshore in the proportion of terrestrial material in the sedimentary particulate organic matter (POM) pool, the distribution of flocculated Fe in sediments is modulated by focusing effects. Labile Fe phases are most abundant at a deep site in the inner basin of the estuary, consistent with input from flocculation and subsequent focusing. The majority of the labile Fe pool is present as Fe (II), including both acid-volatile sulfur (AVS)-bound Fe and unsulfidized phases. The ubiquitous presence of unsulfidized Fe (II) throughout the sediment column suggests Fe (II)-OM complexes derived from reduction of flocculated Fe (III)-OM, while other Fe (II) phases are likely derived from the reduction of flocculated ferrihydrite. Depth-integrated rates of Fe (II) accumulation (AVS-Fe + unsulfidized Fe (II) + pyrite) for the period 1970–2015 are greater in the inner basin of the estuary with respect to a site further offshore, confirming higher rates of Fe reduction in near-shore areas. Mössbauer 57Fe spectroscopy shows that refractory Fe is composed largely of superparamagnetic Fe (III), high-spin Fe (II) in silicates, and, at one station, also oxide minerals derived from past industrial activities. Our results highlight that the cycling of Fe in boreal estuarine environments is complex, and that the partial decoupling of Fe from OM during flocculation and sedimentation is key to understanding the role of Fe in sedimentary diagenetic processes in coastal areas.

Environmental DNA (eDNA) analysis has gained traction as a precise and cost-effective method for species and waterways management. To date, publications on eDNA protocol optimization have focused primarily on DNA yield. Therefore, it has not been possible to evaluate the cost and speed of specific components of the eDNA protocol, such as water filtration and DNA extraction method when designing or choosing an eDNA protocol. At the same time, these two parameters are essential for the experimental design of a project. Here we evaluate and rank 27 different eDNA protocols in the context of Chinook salmon (Oncorhynchus tshawytscha) eDNA detection in an estuarine environment. We present a comprehensive evaluation of multiple eDNA protocol parameters, balancing time, cost and DNA yield. We collected samples composed of 500 mL estuarine water from Deverton Slough (38°11'16.7\"N 121°58'34.5\"W) and 500 mL from tank water containing 1.3 juvenile Chinook Salmon per liter. Then, we compared extraction methods, filter types, use of inhibitor removal kit for DNA yield, processing time, and protocol cost. Lastly, we used an MCMC algorithm together with machine learning to understand the DNA yield of each step of the protocol as well as the interactions between those steps. Glass fiber filtration was to be the most resilient to high turbidites, filtering the samples in 2.32 ± 0.08 min instead of 14.16 ± 1.86 min and 6.72 ± 1.99 min for nitrocellulose and paper filter N1, respectively. The filtration DNA yield percentages for paper filter N1, glass fiber, and nitrocellulose were 0.00045 ± 0.00013, 0.00107 ± 0.00013, 0.00172 ± 0.00013. The DNA extraction yield percentage for QIagen, dipstick, NaOH, magnetic beads, and direct dipstick ranged from 0.047 ± 0.0388 to 0.475 ± 0.0357. For estuarine waters, which are challenging for eDNA studies due to high turbidity, variable salinity, and the presence of PCR inhibitors, we found that a protocol combining glass filters, magnetic beads, and an extra step for PCR inhibitor removal, is the method that best balances time, cost, and yield. In addition, we provide a generalized decision tree for determining the optimal eDNA protocol for other studies in aquatic systems. Our findings should be applicable to most aquatic environments and provide a clear guide for determining which eDNA protocol should be used under different study constraints.

South-East Asia is home to one of the world's largest stores of tropical peatland and accounts for roughly 10 % of the global land-to-sea dissolved organic carbon (DOC) flux. We present the first ever seasonally resolved measurements of DOC concentration and chromophoric dissolved organic matter (CDOM) spectra for six peatland-draining rivers and coastal waters in Sarawak, north-western Borneo. The rivers differed substantially in DOC concentration, ranging from 120–250 µmol L−1 (Rajang River) to 3100–4400 µmol L−1 (Maludam River). All rivers carried high CDOM concentrations, with a350 in the four blackwater rivers between 70 and 210 m−1 and 4 and 12 m−1 in the other two rivers. DOC and CDOM showed conservative mixing with seawater except in the largest river (the Rajang), where DOC concentrations in the estuary were elevated, most likely due to inputs from the extensive peatlands within the Rajang Delta. Seasonal variation was moderate and inconsistent between rivers. However, during the rainier north-east monsoon, all marine stations in the western part of our study area had higher DOC concentrations and lower CDOM spectral slopes, indicating a greater proportion of terrigenous DOM in coastal waters. Photodegradation experiments revealed that riverine DOC and CDOM in Sarawak are photolabile: up to 25 % of riverine DOC was lost within 5 days of exposure to natural sunlight, and the spectral slopes of photo-bleached CDOM resembled those of our marine samples. We conclude that coastal waters of Sarawak receive large inputs of terrigenous DOC that is only minimally altered during estuarine transport and that any biogeochemical processing must therefore occur mostly at sea. It is likely that photodegradation plays an important role in the degradation of terrigenous DOC in these waters.

New York City (NYC) is representative of many vulnerable coastal urban populations, infrastructures, and economies threatened by global sea level rise. The steady loss of marshes in NYC’s Jamaica Bay is typical of many urban estuaries worldwide. Essential to the restoration and preservation of these key wetlands is an understanding of their sedimentation. Here we present a reconstruction of the history of mineral and organic sediment fluxes in Jamaica Bay marshes over three centuries, using a combination of density measurements and a detailed accretion model. Accretion rate is calculated using historical land use and pollution markers, through a wide variety of sediment core analyses including geochemical, isotopic, and paleobotanical analyses. We find that, since 1800 CE, urban development dramatically reduced the input of marsh-stabilizing mineral sediment. However, as mineral flux decreased, organic matter flux increased. While this organic accumulation increase allowed vertical accumulation to outpace sea level, reduced mineral content causes structural weakness and edge failure. Marsh integrity now requires mineral sediment addition to both marshes and subsurface channels and borrow pits, a solution applicable to drowning estuaries worldwide. Integration of marsh mineral/organic accretion history with modeling provides parameters for marsh preservation at specific locales with sea level rise.

Faecal contamination of estuarine and coastal waters can pose a risk to human health, particularly in areas used for shellfish production or recreation. Routine microbiological water quality testing highlights areas of faecal indicator bacteria (FIB) contamination within the water column, but fails to consider the abundance of FIB in sediments, which under certain hydrodynamic conditions can become resuspended. Sediments can enhance the survival of FIB in estuarine environments, but the influence of sediment composition on the ecology and abundance of FIB is poorly understood. To determine the relationship between sediment composition (grain size and organic matter) and the abundance of pathogen indicator bacteria (PIB), sediments were collected from four transverse transects of the Conwy estuary, UK. The abundance of culturable Escherichia coli, total coliforms, enterococci, Campylobacter, Salmonella and Vibrio spp. in sediments was determined in relation to sediment grain size, organic matter content, salinity, depth and temperature. Sediments that contained higher proportions of silt and/or clay and associated organic matter content showed significant positive correlations with the abundance of PIB. Furthermore, the abundance of each bacterial group was positively correlated with the presence of all other groups enumerated. Campylobacter spp. were not isolated from estuarine sediments. Comparisons of the number of culturable E. coli, total coliforms and Vibrio spp. in sediments and the water column revealed that their abundance was 281, 433 and 58-fold greater in sediments (colony forming units (CFU)/100g) when compared with the water column (CFU/100ml), respectively. These data provide important insights into sediment compositions that promote the abundance of PIB in estuarine environments, with important implications for the modelling and prediction of public health risk based on sediment resuspension and transport.

In this paper, a reinterpretation of the older 14C ages of the Pleistocene substrate of the Holocene barrier-lagoon system of three coastal localities in southern Brazil is presented (Hermenegildo, Cassino, and Curumim). Sedimentological, geochronological, palynological, and diatom analyses of a sedimentary deposit formed in an estuarine/shallow marine environment are examined. This sedimentary deposit is presently found between 22 and 25 m depth below sea level in the Pinheira coastal plain. Results from all studied sites indicate that the deposit was formed under a former sea level of Marine Isotopic Stage 3 (MIS 3) that may have oscillated in the study region between 5 and 23 m depth below present sea level, from 36.2 to 47.7 ka. These results are reinforced by studies of nearby sites, including southeast Brazil. The Pleistocene substrate of the Holocene lagoonal-barrier system, at depths lower than 5 m below sea level, seems to correspond to sedimentary deposits of the Pleistocene barrier formed during MIS 5, while at depths greater than 5 m below sea level, they might correspond to sedimentary deposits that were formed during the relative high sea levels of MIS 3.

The purpose of this study is to investigate the current status of metal pollution of the sediments from urban-stream, estuary and Jinzhou Bay of the coastal industrial city, NE China. Forty surface sediment samples from river, estuary and bay and one sediment core from Jinzhou bay were collected and analyzed for heavy metal concentrations of Cu, Zn, Pb, Cd, Ni and Mn. The data reveals that there was a remarkable change in the contents of heavy metals among the sampling sediments, and all the mean values of heavy metal concentration were higher than the national guideline values of marine sediment quality of China (GB 18668-2002). This is one of the most polluted of the world's impacted coastal systems. Both the correlation analyses and geostatistical analyses showed that Cu, Zn, Pb and Cd have a very similar spatial pattern and come from the industrial activities, and the concentration of Mn mainly caused by natural factors. The estuary is the most polluted area with extremely high potential ecological risk; however the contamination decreased with distance seaward of the river estuary. This study clearly highlights the urgent need to make great efforts to control the industrial emission and the exceptionally severe heavy metal pollution in the coastal area, and the immediate measures should be carried out to minimize the rate of contamination, and extent of future pollution problems.

Fossil ostracods have been widely used for Quaternary paleoenvironmental reconstructions, especially in marginal marine environments (e.g., for water depth, temperature, salinity, oxygen levels, pollution). But our knowledge of indicator species autoecology, the base of paleoenvironmental reconstructions, remains limited and commonly lacks robust statistical support and comprehensive comparison with environmental data. We analyzed marginal marine ostracod taxa at 52 sites in Hong Kong for which comprehensive environmental data are available. We applied linear regression models to reveal relationships between species distribution and environmental factors for 18 common taxa (mainly species, a few genera) in our Hong Kong dataset and identified indicator species of environmental parameters. For example, Sinocytheridea impressa, a widely distributed euryhaline species throughout the East and South China Sea and the Indo-Pacific, indicates eutrophication and bottom-water hypoxia. Neomonoceratina delicata, a widely known species from nearshore and estuarine environments in the East and South China Sea and the Indo-Pacific, indicates heavy metal pollution and increased turbidity. The 18 taxa used for this study are widely distributed geographically and divided into the following groups: widespread (throughout the northwestern Pacific and Indo-Pacific regions), temperate (South China Sea to Russia (Sea of Japan coast) and Japan), subtropical (Indo-Pacific to the East China Sea), tropical (Indo-Pacific and South China Sea), and globally distributed. With statistical support from ecological modeling and comprehensive environmental data, these results provide a robust baseline for ostracod-based Quaternary–Anthropocene paleoenvironmental reconstructions in the tropical–extratropical northwestern Pacific and Indo-Pacific. Highlights. We provide a robust baseline for ostracod-based (microscopic Arthropods) paleoenvironmental reconstructions from Quaternary and Anthropocene marginal marine sediments. The studied species have wide distributions over the tropics and extratropics of the northwestern Pacific and Indo-Pacific. Ecological modeling has established ostracod species as reliable indicators for paleoenvironmental reconstructions.

Ocean acidification threatens to reduce pH and aragonite saturation state (ΩA) in estuaries, potentially damaging their ecosystems. However, the impact of highly variable river total alkalinity (TA) and dissolved inorganic carbon (DIC) on pH and ΩA in these estuaries is unknown. We assess the sensitivity of estuarine surface pH and ΩA to river TA and DIC using a coupled biogeochemical model of the Strait of Georgia on the Canadian Pacific coast and place the results in the context of global rivers. The productive Strait of Georgia estuary has a large, seasonally variable freshwater input from the glacially fed, undammed Fraser River. Analyzing TA observations from this river plume and pH from the river mouth, we find that the Fraser is moderately alkaline (TA 500–1000 µmol kg−1) but relatively DIC-rich. Model results show that estuarine pH and ΩA are sensitive to freshwater DIC and TA, but do not vary in synchrony except at high DIC : TA. The asynchrony occurs because increased freshwater TA is associated with increased DIC, which contributes to an increased estuarine DIC : TA and reduces pH, while the resulting higher carbonate ion concentration causes an increase in estuarine ΩA. When freshwater DIC : TA increases (beyond  ∼  1.1), the shifting chemistry causes a paucity of the carbonate ion that overwhelms the simple dilution/enhancement effect. At this high DIC : TA ratio, estuarine sensitivity to river chemistry increases overall. Furthermore, this increased sensitivity extends to reduced flow regimes that are expected in future. Modulating these negative impacts is the seasonal productivity in the estuary which draws down DIC and reduces the sensitivity of estuarine pH to increasing DIC during the summer season.

Among environmental contaminants, heavy metals are currently considered to be some of the most toxic ones present worldwide due to their harmful effects on organisms and ability to bioaccumulate in aquatic systems. In this work, the concentration of heavy metals (Cd, Cu, Pb, Zn, Ni and Cr) in Brachidontes rodriguezii and in the fine sediments of several coastal sites at the southwest of Buenos Aires Province, Argentina is analyzed. The Bahía Blanca Estuary and Pehuen-Có beach are located in a highly complex oceanographic and ecological regional system, which creates the basis of one of the most valuable Argentinean habitats for fishing commercial species. An assessment, which involved analyzing distribution pattern of trace metals, comparative studies with sediment and ecological quality guidelines; and a sequential and integrated index analyses approach (containing Metal Pollution Index, Biosediment Accumulation Factor, Geo-accumulation Index (Igeo), Pollution Load Index and the mean Probable Effect Level quotients), was followed to estimate enrichment and risks of heavy metals in the sediments and in the mussels from these study areas. The results showed higher concentrations of some heavy metals (e.g., Cd, Cr and Ni) in mussels collected at Pehuen-Có, while no spatial differences in sediments were observed. According to the international environmental regulations, mean values of trace metals in mussels allowed to place both sites between “unpolluted and moderately polluted” and between the “low and medium category” of pollution. Furthermore, the mean concentrations found were within the detected ranges in other coastal sites worldwide.