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"Extreme environment"
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Whole-Genome Sequencing of Native Sheep Provides Insights into Rapid Adaptations to Extreme Environments
Global climate change has a significant effect on extreme environments and a profound influence on species survival. However, little is known of the genome-wide pattern of livestock adaptations to extreme environments over a short time frame following domestication. Sheep (Ovis aries) have become well adapted to a diverse range of agroecological zones, including certain extreme environments (e.g., plateaus and deserts), during their post-domestication (approximately 8–9 kya) migration and differentiation. Here, we generated whole-genome sequences from 77 native sheep, with an average effective sequencing depth of ∼5× for 75 samples and ∼42× for 2 samples. Comparative genomic analyses among sheep in contrasting environments, that is, plateau (>4,000 m above sea level) versus lowland (<100 m), high-altitude region (>1500 m) versus low-altitude region (<1300 m), desert (<10 mm average annual precipitation) versus highly humid region (>600 mm), and arid zone (<400 mm) versus humid zone (>400 mm), detected a novel set of candidate genes as well as pathways and GO categories that are putatively associated with hypoxia responses at high altitudes and water reabsorption in arid environments. In addition, candidate genes and GO terms functionally related to energy metabolism and body size variations were identified. This study offers novel insights into rapid genomic adaptations to extreme environments in sheep and other animals, and provides a valuable resource for future research on livestock breeding in response to climate change.
Journal Article
Biofilms: The Microbial “Protective Clothing” in Extreme Environments
Microbial biofilms are communities of aggregated microbial cells embedded in a self-produced matrix of extracellular polymeric substances (EPS). Biofilms are recalcitrant to extreme environments, and can protect microorganisms from ultraviolet (UV) radiation, extreme temperature, extreme pH, high salinity, high pressure, poor nutrients, antibiotics, etc., by acting as “protective clothing”. In recent years, research works on biofilms have been mainly focused on biofilm-associated infections and strategies for combating microbial biofilms. In this review, we focus instead on the contemporary perspectives of biofilm formation in extreme environments, and describe the fundamental roles of biofilm in protecting microbial exposure to extreme environmental stresses and the regulatory factors involved in biofilm formation. Understanding the mechanisms of biofilm formation in extreme environments is essential for the employment of beneficial microorganisms and prevention of harmful microorganisms.
Journal Article
When Salt Meddles Between Plant, Soil, and Microorganisms
In extreme environments, the relationships between species are often exclusive and based on complex mechanisms. This review aims to give an overview of the microbial ecology of saline soils, but in particular of what is known about the interaction between plants and their soil microbiome, and the mechanisms linked to higher resistance of some plants to harsh saline soil conditions. Agricultural soils affected by salinity is a matter of concern in many countries. Soil salinization is caused by readily soluble salts containing anions like chloride, sulphate and nitrate, as well as sodium and potassium cations. Salinity harms plants because it affects their photosynthesis, respiration, distribution of assimilates and causes wilting, drying, and death of entire organs. Despite these life-unfavorable conditions, saline soils are unique ecological niches inhabited by extremophilic microorganisms that have specific adaptation strategies. Important traits related to the resistance to salinity are also associated with the rhizosphere-microbiota and the endophytic compartments of plants. For some years now, there have been studies dedicated to the isolation and characterization of species of plants' endophytes living in extreme environments. The metabolic and biotechnological potential of some of these microorganisms is promising. However, the selection of microorganisms capable of living in association with host plants and promoting their survival under stressful conditions is only just beginning. Understanding the mechanisms of these processes and the specificity of such interactions will allow us to focus our efforts on species that can potentially be used as beneficial bioinoculants for crops.
Journal Article
Extreme stresses, niches, and positive species interactions along stress gradients
Since proposed two decades ago, the stress-gradient hypothesis (SGH), suggesting that species interactions shift from competition to facilitation with stress, has been widely examined. Despite broad support across species and ecosystems, ecologists debate whether the SGH applies to extreme environments, arguing that species interactions switch to competition or collapse under extreme stress. We show that facilitation often expands distributions on species borders. SGH exceptions occur when weak stress gradients or stresses outside of species' niches are examined, multiple stresses co-occur canceling out their effects, temporally dependent effects are involved, or results are improperly analyzed. We suggest that ecologists resolve debates by standardizing key SGH terms, such as fundamental and realized niche, stress gradients vs. environmental gradients, by quantitatively defining extreme stress, and by critically evaluating the functionality of stress gradients. We also suggest that new research examine the breadth and relevance of the SGH. More rigor needs to be applied to SGH tests to identify actual exceptions rather than those due to failures to meet its underlying assumptions, so that the general principles of the SGH and its exceptions can be incorporated into ecological theory, conservation strategies, and environmental change predictions.
Journal Article
Genome of Crucihimalaya himalaica, a close relative of Arabidopsis, shows ecological adaptation to high altitude
Crucihimalaya himalaica, a close relative of Arabidopsis and Capsella, grows on the Qinghai–Tibet Plateau (QTP) about 4,000 m above sea level and represents an attractive model system for studying speciation and ecological adaptation in extreme environments. We assembled a draft genome sequence of 234.72 Mb encoding 27,019 genes and investigated its origin and adaptive evolutionary mechanisms. Phylogenomic analyses based on 4,586 single-copy genes revealed that C. himalaica is most closely related to Capsella (estimated divergence 8.8 to 12.2 Mya), whereas both species form a sister clade to Arabidopsis thaliana and Arabidopsis lyrata, from which they diverged between 12.7 and 17.2 Mya. LTR retrotransposons in C. himalaica proliferated shortly after the dramatic uplift and climatic change of the Himalayas from the Late Pliocene to Pleistocene. Compared with closely related species, C. himalaica showed significant contraction and pseudogenization in gene families associated with disease resistance and also significant expansion in gene families associated with ubiquitin-mediated proteolysis and DNA repair. We identified hundreds of genes involved in DNA repair, ubiquitin-mediated proteolysis, and reproductive processes with signs of positive selection. Gene families showing dramatic changes in size and genes showing signs of positive selection are likely candidates for C. himalaica’s adaptation to intense radiation, low temperature, and pathogen-depauperate environments in the QTP. Loss of function at the S-locus, the reason for the transition to self-fertilization of C. himalaica, might have enabled its QTP occupation. Overall, the genome sequence of C. himalaica provides insights into the mechanisms of plant adaptation to extreme environments.
Journal Article
Haloxylon ammodendron adapts to desert environments through seed polymorphism during diaspore germination and seedling establishment
Seed polymorphism, defined as the production of two or more types of diaspores with distinct morphology and ecological function within a species, represents a bet-hedging strategy that enables plants to cope with unpredictable spatiotemporal environmental variability. Previous studies have mainly focused on annual plants; therefore, little is known about in perennial species, particularly in desert constructive plants.
This study investigated seed polymorphism in
, a foundational desert shrub critical for maintaining the stability of fragile arid ecosystems. Field surveys, morphological characterization, phytohormone quantification, germination assays, and seedling growth analyses were conducted to elucidate the ecological significance of seed polymorphism in this species.
Seed polymorphism was prevalent across natural populations within the study region, with different plants producing three distinctly colored diaspores: YY (yellow fruit-wing perianth and yellow pericarp), YP (yellow fruit-wing perianth and pink pericarp), and PP (pink fruit-wing perianth and pink pericarp). The fruit/diaspore biomass and gibberellic acid/abscisic acid ratio were the lowest in YY (0.611 and 0.64, respectively) and the highest in YP (0.684 and 1.56). YY plants exhibited grater drought resistant and produced fewer but more robust seedlings, ensuring population persistence. YP seeds have a higher germination percentage, germination rate, and emergence percentage, facilitating rapid population expansion under favorable conditions. PP seeds showed reduced germination under salt stress, suggesting a potential role as a persistent soil seed bank. These results indicate that
employs seed polymorphism to adapt to unpredictable desert environment during diaspore germination and seedling establishment. This study enhances the theoretical understanding of the bionomic strategies underpinning plant adaptation to extreme environments, with implications for population persistence and regeneration dynamics, while also providing diversified germplasm resources for desertification prevention.
Journal Article
Sea ice as habitat for microalgae, bacteria, virus, fungi, meio- and macrofauna: A review of an extreme environment
The novel concept of the review is a focus on the organisms living in the sea ice and what mechanisms they have developed for their existence. The review describes the physical environment of the sea ice and the microorganisms living there as microalgae, bacteria, virus, fungi, meio- and macrofauna where they inhabit the brine channels and exposed to low temperatures as down to −25 °C and high salinities—up to 300. Nutrients, O2, CO2, pH, light, and UV are also identified as stressors regarding the metabolism of the microorganisms. It is argued that sea ice must be recognized as an extreme environment as based on records of very high or very low concentrations or intensities of the stressors that living organisms in the ice are exposed to and able to endure. Each taxonomic group of organisms in the sea ice are dealt with in detail in terms of the explicit stressors the group is exposed to, and specifically what known mechanisms that the organisms have amended to secure existence and life. These mechanisms are known for some group of organisms as autotrophs, bacteria, meio- and macrofauna but less so for virus and fungi. The review concludes that sea ice is an extreme environment where the stressors vary significantly in both space and time, both in consort and solitary, classifying organisms living there as polyextremophiles and extremophiles. The review relates further to extraterrestrial moons covered with sea ice and these habitats and points toward sea ice on Earth for prospective studies until further technological advances.
Journal Article
Microbial community composition and dolomite formation in the hypersaline microbial mats of the Khor Al-Adaid sabkhas, Qatar
The Khor Al-Adaid sabkha in Qatar is among the rare extreme environments on Earth where it is possible to study the formation of dolomite—a carbonate mineral whose origin remains unclear and has been hypothetically linked to microbial activity. By combining geochemical measurements with microbiological analysis, we have investigated the microbial mats colonizing the intertidal areas of sabhka. The main aim of this study was to identify communities and conditions that are favorable for dolomite formation. We inspected and sampled two locations. The first site was colonized by microbial mats that graded vertically from photo-oxic to anoxic conditions and were dominated by cyanobacteria. The second site, with higher salinity, had mats with an uppermost photo-oxic layer dominated by filamentous anoxygenic photosynthetic bacteria (FAPB), which potentially act as a protective layer against salinity for cyanobacterial species within the deeper layers. Porewater in the uppermost layers of the both investigated microbial mats was supersaturated with respect to dolomite. Corresponding to the variation of the microbial community’s vertical structure, a difference in crystallinity and morphology of dolomitic phases was observed: dumbbell-shaped proto-dolomite in the mats dominated by cyanobacteria and rhombohedral ordered-dolomite in the mat dominated by FAPB.
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