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Magnetic signals in igneous rocks arise from assemblages of iron‐oxide bearing minerals that differ in for example, size, shape, and chemistry. Paleomagnetic measurements on bulk samples measure millions of such grains simultaneously, producing a statistical ensemble of the magnetic moments of the individual grains. Scanning magnetometry techniques such as the Quantum Diamond Microscope (QDM) measure magnetic signals on micrometer scales, allowing the identification of magnetic moments of individual grains in a sample using for example, Micromagnetic Tomography (MMT). Here we produce a grain‐size distribution of iron‐oxides in a typical Hawaiian basalt from the superparamagnetic threshold (∼40 nm) to grains with a diameter of 10 µm. This grain‐size distribution is obtained by combining FIB‐SEM and MicroCT data from sister specimens, and normalizing them to the mineral surface area of non‐magnetic minerals. Then we use this grain‐size distribution to determine the contributions of individual magnetic carriers to bulk magnetic measurements and surface magnetometry. We found that measurements on bulk samples are sensitive to relatively small grain sizes in the realm of single domain or vortex states (<200 nm), while signals in surface magnetometry arise mainly from larger grains with diameters >1 µm. This implies that bulk measurements cannot be compared straightforwardly to signals from surface magnetometry from the same sample. Moreover, our observations explain why MMT results are insensitive to the presence of many small grains in a sample that intuitively should hamper their outcome. Plain Language Summary Magnetic grains in lavas acquire a magnetic signal while cooling in presence of Earth's magnetic field. However, not all grains preserve the signal well, meaning that both good and bad recorders are present. Classical paleomagnetic techniques measure the magnetic signal of all recorders together, that is, the bulk signal. New scanning magnetometry techniques such as Micromagnetic Tomography acquire the signal from individual recorders in the lava, enabling the selection of potentially good recorders and the rejection of signals from bad recorders. Here we found that these two types of magnetic measurements do not measure the same grains that are present in the sample: classical techniques emphasize small grains (<200 nm), while signals in surface magnetometry arise mainly from larger grains with diameters >1 μm. This means that measurements from both techniques performed on the same sample material cannot be compared straightforwardly. Furthermore, our results explain why Micromagnetic Tomography results often are successful, even when many small magnetic grains that intuitively should hamper this technique are present in a sample. Key Points We determine contributions of individual magnetic carriers to bulk magnetic measurements and surface magnetometry Measurements on bulk samples are sensitive to small grains (<200 nm); surface magnetometry emphasizes signals from larger grains (>1 μm) Our observations explain why undetected ghost grains in MMT experiments have an unintuitively low impact on the accuracy of MMT results

Close appositions between the membrane of the endoplasmic reticulum (ER) and other intracellular membranes have important functions in cell physiology. These include lipid homeostasis, regulation of Ca2+ dynamics, and control of organelle biogenesis and dynamics. Although these membrane contacts have previously been observed in neurons, their distribution and abundance have not been systematically analyzed. Here, we have used focused ion beam-scanning electron microscopy to generate 3D reconstructions of intracellular organelles and their membrane appositions involving the ER (distance ≤30 nm) in different neuronal compartments. ER–plasma membrane (PM) contacts were particularly abundant in cell bodies, with large, flat ER cisternae apposed to the PM, sometimes with a notably narrow lumen (thin ER). Smaller ER–PM contacts occurred throughout dendrites, axons, and in axon terminals. ER contacts with mitochondria were abundant in all compartments, with the ER often forming a network that embraced mitochondria. Small focal contacts were also observed with tubulovesicular structures, likely to be endosomes, and with sparse multivesicular bodies and lysosomes found in our reconstructions. Our study provides an anatomical reference for interpreting information about interorganelle communication in neurons emerging from functional and biochemical studies.

Telocyte (TC) is a newly identified type of cell in the cardiac interstitium (www.telocytes.com). TCs are described by classical transmission electron microscopy as cells with very thin and long telopodes (Tps; cellular prolongations) having podoms (dilations) and podomers (very thin segments). TCs' three‐dimensional (3D) morphology is still unknown. Cardiac TCs seem to be particularly involved in long and short distance intercellular signalling and, therefore, their 3D architecture is important for understanding their spatial connections. Using focused ion beam scanning electron microscopy (FIB‐SEM) we show, for the first time, the whole ultrastructural anatomy of cardiac TCs. 3D reconstruction of cardiac TCs by FIB‐SEM tomography confirms that they have long, narrow but flattened (ribbon‐like) telopodes, with humps generated by the podoms. FIB‐SEM tomography also confirms the network made by TCs in the cardiac interstitium through adherens junctions. This study provides the first FIB‐SEM tomography of a human cell type.

Loss of mitochondrial membrane potential (ΔΨm) triggers dramatic structural changes in mitochondria from a tubular to globular shape, referred to as mitochondrial fragmentation; the resulting globular mitochondria are called swelled or ring/doughnut mitochondria. We evaluated the early period of structural changes during the ΔΨm loss-induced transformation after carbonyl cyanide m -chlorophenyl hydrazine (CCCP) administration using a newly developed correlative microscopic method combined with fluorescence microscopic live imaging and volume electron microscopy. We found that most mitochondria changed from a tubular shape to a globular shape without fusion or fission and typically showed ring shapes within 10 min after CCCP exposure. In contrast, most ring mitochondria did not have a true through hole; rather, they had various indents, and 47% showed stomatocyte shapes with vase-shaped cavities, which is the most stable physical structure without any structural support if the long tubular shape shortens into a sphere. Our results suggested that loss of ΔΨm triggered collapse of mitochondrial structural support mechanisms.

Lamella micromachining by focused ion beam milling at cryogenic temperature (cryo-FIB) has matured into a preparation method widely used for cellular cryo-electron tomography. Due to the limited ablation rates of low Ga + ion beam currents required to maintain the structural integrity of vitreous specimens, common preparation protocols are time-consuming and labor intensive. The improved stability of new-generation cryo-FIB instruments now enables automated operations. Here, we present an open-source software tool, SerialFIB, for creating automated and customizable cryo-FIB preparation protocols. The software encompasses a graphical user interface for easy execution of routine lamellae preparations, a scripting module compatible with available Python packages, and interfaces with three-dimensional correlative light and electron microscopy (CLEM) tools. SerialFIB enables the streamlining of advanced cryo-FIB protocols such as multi-modal imaging, CLEM-guided lamella preparation and in situ lamella lift-out procedures. Our software therefore provides a foundation for further development of advanced cryogenic imaging and sample preparation protocols.

During skeletal development, bone growth and mineralization require transport of substantial amounts of calcium, while maintaining very low concentration. How an organism overcomes this major logistical challenge remains mostly unexplained. To shed some light on the dynamics of this process, cryogenic focused ion beam‐scanning electron microscopy (cryo‐FIB/SEM) is used to image forming bone tissue at day 13 of a chick embryo femur. Both cells and matrix in 3D are visualized and observed as calcium‐rich intracellular vesicular structures. Counting the number of these vesicles per unit volume and measuring their calcium content based on the electron back‐scattering signal, the intracellular velocity at which these vesicles need to travel to transport all the calcium required for the mineral deposited in one day within the collagenous tissue can be estimated. This velocity at 0.27 µm s−1 is estimated, which is too large for a diffusion process and rather suggests active transport through the cellular network. It is concluded that calcium logistics is hierarchical and based on several transport mechanisms: first through the vasculature using calcium‐binding proteins and the blood flow, then active transport over tens of micrometers through the network of osteoblasts and osteocytes, and finally diffusive transport over the last one or two microns. By studying samples in their close‐to native state at high resolution and in 3D, new lights have been shed on the logistics of bone mineralization during formation. Vesicles containing mineral precursors are found within the bone cells and are actively trafficked. An interconnected network of canaliculi and nanochannels facilitates their transport and access to the mineralization sites via diffusion.

Lithium metal batteries are promising next‐generation rechargeable batteries with high energy density. However, the high reactivity of lithium metal leads to an undesirable growth of high surface area lithium during electrodeposition and ‐dissolution and remains a key challenge that must be addressed to enable commercialization. Modification of the Li metal surface to obtain protective coatings is a common method to overcome these challenges. In this study, the influence of the thickness of an intermetallic coating on Li metal is investigated after application by means of thermal evaporation. In addition, the relevance of pre‐treatments in reducing the native layer thickness and surface roughness by roll‐pressing Li metal prior to coating is demonstrated. Morphological analyses are performed on cross‐sections prepared under cryogenic conditions to investigate the origin of high surface area lithium growth and coating cracks after electrodeposition and ‐dissolution processes. The results obtained support the conclusion that the exclusive combination of roll‐pressed Li metal foil followed by coating reduces overvoltage and improves cycle life at elevated current densities. Modification of the lithium metal surface by protective coatings is inevitable to reduce undesirable growth of HSAL during electrodeposition/‐dissolution, which represents a key challenge for lithium metal batteries. Herein, the thickness of a LiZn‐intermetallic coating is optimized and combined with mechanical pre‐treatment of Li metal via roll‐pressing to homogenize the native layer thickness to obtain excellent deposition behavior and performance.

We have shown in 2012 the existence of telocytes (TCs) in human dermis. TCs were described by transmission electron microscopy (TEM) as interstitial cells located in non‐epithelial spaces (stroma) of many organs (see www.telocytes.com). TCs have very long prolongations (tens to hundreds micrometers) named Telopodes (Tps). These Tps have a special conformation with dilated portions named podoms (containing mitochondria, endoplasmic reticulum and caveolae) and very thin segments (below resolving power of light microscopy), called podomers. To show the real 3D architecture of TC network, we used the most advanced available electron microscope technology: focused ion beam scanning electron microscopy (FIB‐SEM) tomography. Generally, 3D reconstruction of dermal TCs by FIB‐SEM tomography revealed the existence of Tps with various conformations: (i) long, flattened irregular veils (ribbon‐like segments) with knobs, corresponding to podoms, and (ii) tubular structures (podomers) with uneven calibre because of irregular dilations (knobs) – the podoms. FIB‐SEM tomography also showed numerous extracellular vesicles (diameter 438.6 ± 149.1 nm, n = 30) released by a human dermal TC. Our data might be useful for understanding the role(s) of TCs in intercellular signalling and communication, as well as for comprehension of pathologies like scleroderma, multiple sclerosis, psoriasis, etc.

The spatial-temporal relationship between cells, extracellular matrices, and mineral deposits is fundamental for an improved understanding of mineralization mechanisms in vertebrate tissues. By utilizing focused ion beam-scanning electron microscopy with serial surface imaging, normally mineralizing avian tendons have been studied with nanometer resolution in three dimensions with volumes exceeding tens of micrometers in range. These parameters are necessary to yield sufficiently fine ultrastructural details while providing a comprehensive overview of the interrelationships between the tissue structural constituents. Investigation reveals a complex lacuno-canalicular network in highly mineralized tendon regions, where ∼100 nm diameter canaliculi emanating from cell (tenocyte) lacunae surround extracellular collagen fibril bundles. Canaliculi are linked to smaller channels of ∼40 nm diameter, occupying spaces between fibrils. Close to the tendon mineralization front, calcium-rich deposits appear between the fibrils and, with time, mineral propagates along and within them. These close associations between tenocytes, tenocyte lacunae, canaliculi, small channels, collagen, and mineral suggest a concept for the mineralization process, where ions and/or mineral precursors may be transported through spaces between fibrils before they crystallize along the surface of and within the fibrils.

Mitochondria are tubular double-membrane organelles essential for eukaryotic life. They form extended networks and exhibit an intricate inner membrane architecture. The MICOS (mitochondrial contact site and cristae organizing system) complex, crucial for proper architecture of the mitochondrial inner membrane, is localized primarily at crista junctions. Harnessing superresolution fluorescence microscopy, we demonstrate that Mic60, a subunit of the MICOS complex, as well as several of its interaction partners are arranged into intricate patterns in human and yeast mitochondria, suggesting an ordered distribution of the crista junctions. We show that Mic60 forms clusters that are preferentially localized in the inner membrane at two opposing sides of the mitochondrial tubules so that they form extended opposing distribution bands. These Mic60 distribution bands can be twisted, resulting in a helical arrangement. Focused ion beam milling-scanning electron microscopy showed that in yeast the twisting of the opposing distribution bands is echoed by the folding of the inner membrane. We show that establishment of the Mic60 distribution bands is largely independent of the cristae morphology. We suggest that Mic60 is part of an extended multiprotein interaction network that scaffolds mitochondria.