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Ants, an ecologically successful and numerically dominant group of animals, play key ecological roles as soil engineers, predators, nutrient recyclers, and regulators of plant growth and reproduction in most terrestrial ecosystems. Further, ants are widely used as bioindicators of the ecological impact of land use. We gathered information of ant species in the Atlantic Forest of South America. The ATLANTIC ANTS data set, which is part of the ATLANTIC SERIES data papers, is a compilation of ant records from collections (18,713 records), unpublished data (29,651 records), and published sources (106,910 records; 1,059 references), including papers, theses, dissertations, and book chapters published from 1886 to 2020. In total, the data set contains 153,818 ant records from 7,636 study locations in the Atlantic Forest, representing 10 subfamilies, 99 genera, 1,114 ant species identified with updated taxonomic certainty, and 2,235 morphospecies codes. Our data set reflects the heterogeneity in ant records, which include ants sampled at the beginning of the taxonomic history of myrmecology (the 19th and 20th centuries) and more recent ant surveys designed to address specific questions in ecology and biology. The data set can be used by researchers to develop strategies to deal with different macroecological and region-wide questions, focusing on assemblages, species occurrences, and distribution patterns. Furthermore, the data can be used to assess the consequences of changes in land use in the Atlantic Forest on different ecological processes. No copyright restrictions apply to the use of this data set, but we request that authors cite this data paper when using these data in publications or teaching events.

The human-driven loss of biodiversity has numerous ecological, social, and economic impacts at the local and global levels, threatening important ecological functions and jeopardizing human well-being. In this perspective, we present an overview of how tropical defaunation—defined as the disappearance of fauna as a result of anthropogenic drivers such as hunting and habitat alteration in tropical forest ecosystems—is interlinked with four selected Sustainable Development Goals (SDGs). We discuss tropical defaunation related to nutrition and zero hunger (SDG 2), good health and well-being (SDG 3), climate action (SDG 13), and life on land (SDG 15). We propose a range of options on how to study defaunation in future research and how to address the ongoing tropical defaunation crisis, including but not limited to recent insights from policy, conservation management, and development practice.

Madagascar is a threatened global biodiversity hotspot and conservation priority, yet we lack broad-scale surveys to assess biodiversity across space and time. To fill this gap, we collated camera trap surveys, capturing species occurrences within Madagascar into a single standardized database. This data set includes nine distinct protected areas of Madagascar and encompasses 13 subprojects, 38 camera arrays, and 1156 sampling units (independent camera site per survey) within two important biodiversity eco-regions: western dry deciduous forest and eastern humid rainforest. Camera surveys were conducted from June 2007 to January 2021. The final data set includes 17 unique families of mammals (Bovidae, Canidae, Cheirogaleidae, Daubentoniidae, Equidae, Eupleridae, Felidae, Hominidae, Indriidae, Lemuridae, Lepilemuridae, Muridae, Nesomyidae, Pteropodidae, Soricidae, Suidae, Tenrecidae) comprising 45 species and 27 unique families of birds (Accipitridae, Acrocephalidae, Alcedinidae, Bernieridae, Brachypteraciidae, Caprimulgidae, Cisticolidae, Columbidae, Coraciidae, Corvidae, Cuculidae, Dicruridae, Mesitornithidae, Monarchidae, Motacillidae, Muscicapidae, Numididae, Phasianidae, Rallidae, Sarothruridae, Strigidae, Sturnidae, Sulidae, Threskiornithidae, Upupidae, Vangidae, Zosteropidae) comprising 58 species. Images were processed and verified by individual project data set creators and camera operation and species tables were then collated. The final product represents the first broad-scale freely available standardized formal faunal database for Madagascar. Data are available through this publication and at DOI: 10.5281/zenodo.5801806. These data will be useful for examining species-level and community-level trends in occurrence across space or time within Madagascar and globally, evaluating native and invasive species dynamics, and will aid in determining species conservation status and planning for at-risk species. There are no copyright restrictions; please cite this paper when using the data for publication.

A key goal in ecology is to develop effective ways to understand species’ distributions in order to facilitate both their study and conservation. Many species distribution modeling analyses have been performed using either structured survey data or unstructured citizen science data; these two pools of data have tradeoffs in terms of data density, spatiotemporal coverage, and accuracy. Recent studies have shown that combining structured and unstructured survey data can improve the accuracy of species distribution models for birds, but most of this work has focused on north temperate bird species, using bird atlas data that are less available in the Tropics. Here, we adapted a data pooling approach from the literature on north temperate bird biology to create distribution models for a selection of secretive suboscine bird species that occur in a highly diverse region of the southwestern Amazon. Our approach combined automated acoustic monitoring detections and eBird citizen science data available for the region as well as a high resolution land cover dataset of the region’s key ecological gradients. The pooled models outperformed models constructed solely with eBird data for predicting fine grain species responses to habitat gradients in intact forest, but also retained information from the citizen science dataset about species occurrence patterns in non-vegetated areas away from intact forest, including those subject to human disturbance. We present this hybrid approach as a flexible and repeatable means to produce inferences that would not easily be achievable using a single data source, and provide recommendations for other researchers seeking to replicate these methods in Amazonia as well as in other tropical regions.

Although growing urbanization has direct negative consequences for local biodiversity, several native species have been observed maintaining populations in urban environments. Understanding which factors influence the ability of native species to persist in urban environments is crucial, both for the study of biological adaptation and of urban planning. The quantification of the proportion of juvenile individuals can be a good proxy for assessing the long-term persistence of urban populations. We present comparative data about spatial and temporal variations in the age-class structure in two suburban and two forest populations of the Cuban endemic lizard Anolis homolechis, obtained during a 20-month survey. We found a four-fold lower proportion of juveniles in the suburban habitat compared to the forest one. There was, however, no evidence for differential female fecundity between the two habitats, as assessed by the proportion of gravid females. Conversely, the rate of tail autotomy (an antipredator behavior) was significantly higher in the suburban juveniles compared to the forest ones, possibly reflecting a higher exposure to predators and, particularly, inter- and intraspecific cannibalism. However, tail loss at initial capture or habitat type had no effect on the probability of recapture of juveniles. We discuss the potential causes and consequences of a modified age-class structure in urbanized environments.

Tabanidae are considered a nuisance to humans, wild animals, and livestock due to their painful, annoying, and insistent biting. Tabanids transmit some pathogens and parasites biologically and mechanically. In humans, there are relatively few pathogens transmitted regularly. Still, tabanids serve as vectors of a number of disease agents of animals, including viruses, bacteria, protozoans, and nematodes. They are more abundant in tropical and humid regions, and their seasonal patterns are affected by habitat changes such as deforestation and fragmentation. Here, we analyze the tabanid fauna in Monte Negro, a central municipality of Rondônia, Brazil, comparing abundance, richness, and diversity in forest and pasture habitats. Traps were set for 5 days a month for 12 consecutive months. We also examined how abiotic factors (humidity, temperature, and rainfall) affected the abundance, diversity, and richness and the effectiveness of Malaise and Nzi traps as sample methods. The influence of climatic variables on the richness and abundance of the species was tested using generalized linear models, and we used non-parametric dimensional scaling (nMDS) for analysis of species composition and diversity in different traps and environments. We collect 1032 specimens of 25 species. The most abundant species were Tabanus antarcticus , Dichelacera tetradelta , Tabanus mucronatus , and Leucotabanus albovarius . Forest habitats had the highest number of tabanids, followed by pasture and the anthropized area, and there was no significant difference regarding the effectiveness of the Malaise and Nzi traps. The study provides new information on the distribution and ecology of tabanids in Brazil.

The biodiversity–ecosystem function (BEF) relationship is the basis for studying the restoration of degraded ecosystems, and the simultaneous assessment of multi-trophic-level biodiversity and ecosystem multifunctionality relationship is more conducive to unravelling the restoration mechanism of degraded ecosystems, especially for degraded forest ecosystems with harsh habitats and infertile soils such as karst. In this study, we evaluated the biodiversity and soil multifunctionality (SMF) of degraded karst forests (scrub, SB; secondary growth forests, SG; old-growth forests, OG) in the Maolan National Nature Reserve, China, using 30 sample plots. Biodiversity and soil multifunctionality (SMF) at three trophic levels (plant–soil fauna–soil microorganisms), were assessed through vegetation surveys and soil sampling. One-way ANOVA showed that SMF increased with natural restoration, but multi-trophic level biodiversity showed different trends. Pearson’s correlation analysis showed a positive correlation between plant species diversity and SMF (p < 0.001), whereas soil fauna and soil microorganisms were negatively correlated with SMF. Structural equation modeling revealed a cascading effect of the multi-trophic level on the stimulation of the SMF during restoration. Only soil microorganisms exhibited a direct driving effect on SMF (p < 0.001), whereas plants indirectly influenced soil microorganisms through soil fauna, which subsequently affected the SMF. Although we observed the negative effects of increased plant diversity on soil fauna and soil microbial diversity in terms of quantitative relationships, the increase in soil fauna species and the evenness of soil microbial function still contributed to SMF restoration. This study revealed the cascading effects of multi-trophic diversity in promoting SMF restoration and emphasized that soil microbes are key to unraveling restoration mechanisms and processes, whereas soil fauna is an important intermediate link.

Soil fauna play a vital role in contributing to the home-field advantage (HFA: litter decomposes faster in its natural habitat than elsewhere) during litter decomposition. Whether the presence of soil fauna affects the HFA of the decomposition of total phenols and condensed tannins, which are important components of litter, has rarely been investigated. In this study, litterbags with different mesh sizes were transplanted reciprocally, 0.04 mm (basically excluding soil fauna) and 3 mm (basically allowing all soil fauna to enter), in Lindera megaphylla and Cryptomeria fortunei forests. The results illustrated that the loss rates of total phenols and condensed tannins reached 64.07% to 84.49% and 69.67% to 88.37%, respectively, after 2 months of decomposition. Moreover, soil fauna positively contributed to the decomposition of condensed tannins in high-quality litter. After 2 months of decomposition, a significantly positive HFA (HFA index: 10.32) was found for total phenol decomposition in the coarse mesh, while a significantly negative HFA (HFA index: −1.81) was observed for condensed tannin decomposition in the fine mesh after 10 months of decomposition. Polyphenol oxidase (PPO) and peroxidase (POD) activities were significantly influenced by litter types. The loss rates of total phenols and condensed tannins were significantly negatively correlated with the initial N content, P content, N/P ratio, and POD activity and were positively related to the initial C content, total phenol content, condensed tannin content, C/P ratio, and C/N ratio. Only the loss of condensed tannins was negatively correlated with PPO activity (after 2 months’ decomposition). However, none of these correlations were observed after 10 months of decomposition. Our study illustrated that (1) soil fauna contributed to the decomposition of total phenols and condensed tannins but were influenced by litter type for condensed tannins. (2) The soil fauna had inconsistent effects on the HFA of total phenols and condensed tannins, possibly due to the combined regulatory effects of environmental context, litter quality, and rapid decomposition rates. In sum, the results indicated that soil fauna played an important role in the decomposition of condensed tannins and total phenols in litter, and additional studies on the effects of soil faunal abundance and class on HFA of condensed tannins and total phenols are needed.

Generalist mice are key species for the long-term dynamics of fragmented forests due to their dual role as seed dispersers or predators of the dominant trees. Wood mice, Apodemus sylvaticus, usually act as a net predator in woodlots due to higher winter densities and earlier winter reproduction than in forests. Here we analyze the recruitment expectations of young mice born in woodlots in relation to food availability through an index of developmental stability that combined values of fluctuating asymmetry (FA) for six traits of the lower mandibles. FA was measured in young and adult mice caught at the end of the winter in control woodlots, food-supplemented woodlots and in a nearby large forest. Despite low sample sizes (n = 9 for young and n = 74 for adults), FA in young mice born in control woodlots were significantly higher than in those from food-supplemented woodlots and the forest and in all adults. Food limitation in woodlots was thus associated with increased developmental instability of young mice, but it had no effect on adults. Instability likely reduced the survival prospects of young mice through increased mortality, and this should be compensated by yearly recolonization of woodlots by adults from the agricultural matrix in autumn and winter. Future work analyzing mechanisms suggested here but using non-lethal methods will be important to clarify the impacts of FA on the population dynamics of wood mice.