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188 result(s) for "Generalized Additive Models (GAM)"
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Quantitative assessment of interplay between urbanization dynamics and land surface temperature variations using generalized additive model coupled PDP for sustainable urban planning and management
The mountainous region of Asir is experiencing rapid and unsystematic urbanization leading to an increase in land surface temperatures (LST), which poses a challenge to human well-being and ecological balance. Therefore, it is necessary to study the interaction between land use and land cover (LULC)-induced urbanization and LST using advanced geostatistical techniques. In addition, understanding the urbanization process and urban density is essential for effective urban planning and management. The aim of this study was to investigate the interaction between the urbanization process, urban density and the associated LST. Using the Random Forest Algorithm, LULC mapping was conducted for the years 1990, 2000 and 2020. Metrics such as land cover change rate (LCCR), land cover index (LCI), landscape expansion index (LEI), mean landscape expansion index (MLEI) and area-weighted landscape expansion index (AWLEI) were used to understand urbanization processes and LULC changes. Convolutional kernels were used to model urban density, and the mono-window algorithm was applied to analyse LST in the selected years. In addition, the study assessed the Surface Urban Heat Island (SUHI) contribution index to LULC and used Generalized Additive Models (GAMs) in conjunction with Partial Dependence Plots (PDPs) to understand the relationship between urbanization processes, urban density and LST. In a detailed 30-year study, the application of the RF algorithm showed significant shifts in LULC with an overall validation accuracy of over 85%. Urban areas grew dramatically from 69.40 km in 1990 to 338.74 km in 2020, while water areas decreased from 1.51 to 0.54 km . Dense vegetation increased from 43.36 to 52.22 km , indicating positive ecological trends. The LST analysis showed a general warming, with the mean LST increasing from 40.51 °C in 1990 to 46.73 °C in 2020 and the highest temperature category (50-60 °C) increasing from 0.78 to 33.35 km . The built-up area of cities tripled between 1990 and 2020, with the Landscape Expansion Index reflecting significant growth in suburban areas. The modeling of urban density shows increasing urbanization in the centre, which will expand significantly to the east by 2020. The contribution of LULC to LST and the Urban Heat Island (SUHI) effect was evident, with built-up areas showing a constant temperature increase. GAMs confirmed a statistically significant relationship between urban density and LST, with different effects for different types of urban expansion. This comprehensive study quantitatively sheds light on the complicated dynamics of urbanization, land cover change and temperature variation and provides important insights for sustainable urban development.
Are niche-based species distribution models transferable in space
To assess the geographical transferability of niche-based species distribution models fitted with two modelling techniques. Two distinct geographical study areas in Switzerland and Austria, in the subalpine and alpine belts. Generalized linear and generalized additive models (GLM and GAM) with a binomial probability distribution and a logit link were fitted for 54 plant species, based on topoclimatic predictor variables. These models were then evaluated quantitatively and used for spatially explicit predictions within (internal evaluation and prediction) and between (external evaluation and prediction) the two regions. Comparisons of evaluations and spatial predictions between regions and models were conducted in order to test if species and methods meet the criteria of full transferability. By full transferability, we mean that: (1) the internal evaluation of models fitted in region A and B must be similar; (2) a model fitted in region A must at least retain a comparable external evaluation when projected into region B, and vice-versa; and (3) internal and external spatial predictions have to match within both regions. The measures of model fit are, on average, 24% higher for GAMs than for GLMs in both regions. However, the differences between internal and external evaluations (AUC coefficient) are also higher for GAMs than for GLMs (a difference of 30% for models fitted in Switzerland and 54% for models fitted in Austria). Transferability, as measured with the AUC evaluation, fails for 68% of the species in Switzerland and 55% in Austria for GLMs (respectively for 67% and 53% of the species for GAMs). For both GAMs and GLMs, the agreement between internal and external predictions is rather weak on average (Kulczynski's coefficient in the range 0.3-0.4), but varies widely among individual species. The dominant pattern is an asymmetrical transferability between the two study regions (a mean decrease of 20% for the AUC coefficient when the models are transferred from Switzerland and 13% when they are transferred from Austria). The large inter-specific variability observed among the 54 study species underlines the need to consider more than a few species to test properly the transferability of species distribution models. The pronounced asymmetry in transferability between the two study regions may be due to peculiarities of these regions, such as differences in the ranges of environmental predictors or the varied impact of land-use history, or to species-specific reasons like differential phenotypic plasticity, existence of ecotypes or varied dependence on biotic interactions that are not properly incorporated into niche-based models. The lower variation between internal and external evaluation of GLMs compared to GAMs further suggests that overfitting may reduce transferability. Overall, a limited geographical transferability calls for caution when projecting niche-based models for assessing the fate of species in future environments.
Kinetics of tracheid development explain conifer tree-ring structure
Conifer tree rings are generally composed of large, thin-walled cells of light earlywood followed by narrow, thick-walled cells of dense latewood. Yet, how wood formation processes and the associated kinetics create this typical pattern remains poorly understood. We monitored tree-ring formation weekly over 3 yr in 45 trees of three conifer species in France. Data were used to model cell development kinetics, and to attribute the relative importance of the duration and rate of cell enlargement and cell wall deposition on tree-ring structure. Cell enlargement duration contributed to 75% of changes in cell diameter along the tree rings. Remarkably, the amount of wall material per cell was quite constant along the rings. Consequently, and in contrast with widespread belief, changes in cell wall thickness were not principally attributed to the duration and rate of wall deposition (33%), but rather to the changes in cell size (67%). Cell enlargement duration, as the main driver of cell size and wall thickness, contributed to 56% of wood density variation along the rings. This mechanistic framework now forms the basis for unraveling how environmental stresses trigger deviations (e. g. false rings) from the normal tree-ring structure
Prediction of dengue outbreaks based on disease surveillance, meteorological and socio-economic data
Background The goal of this research is to create a system that can use the available relevant information about the factors responsible for the spread of dengue and; use it to predict the occurrence of dengue within a geographical region, so that public health experts can prepare for, manage and control the epidemic. Our study presents new geospatial insights into our understanding and management of health, disease and health-care systems. Methods We present a machine learning-based methodology capable of providing forecast estimates of dengue prediction in each of the fifty districts of Thailand by leveraging data from multiple data sources. Using a set of prediction variables, we show an increase in prediction accuracy of the model with an optimal combination of predictors which include: meteorological data, clinical data, lag variables of disease surveillance, socioeconomic data and the data encoding spatial dependence on dengue transmission. We use Generalized Additive Models (GAMs) to fit the relationships between the predictors (with a lag of one month) and the clinical data of Dengue hemorrhagic fever (DHF) using the data from 2008 to 2012. Using the data from 2013 to 2015 and a comparative set of prediction models, we evaluate the predictive ability of the fitted models according to RMSE and SRMSE as well as using adjusted R-squared value, deviance explained and change in AIC. Results The model allows for combining different predictors to make forecasts with a lead time of one month and also describe the statistical significance of the variables used to characterize the forecast. The discriminating ability of the final model was evaluated against Bangkok specific constant threshold and WHO moving threshold of the epidemic in terms of specificity, sensitivity, positive predictive value (PPV), and negative predictive value (NPV). Conclusions The out-of-sample validation showed poorer results than the in-sample validation, however it demonstrated ability in detecting outbreaks up-to one month ahead. We also determine that for the predicting dengue outbreaks within a district, the influence of dengue incidences and socioeconomic data from the surrounding districts is statistically significant. This validates the influence of movement patterns of people and spatial heterogeneity of human activities on the spread of the epidemic.
Grit subcomponents are differentially associated with practice trajectories underlying expertise development
Practice is essential for skill acquisition, yet the psychological traits driving changes that occur with practice remain unclear. We extend previous work that identified grit as a key psychological trait underpinning practice accumulation in football. More specifically, we examined whether similar patterns exist in alpine ski racing, a sport characterized by seasonal constraints and limited practice opportunities. We collected retrospective estimates of practice hours from N  = 231 elite youth skiers in Austria and the USA aged 6 to 19 years, alongside current measures of grit’s subcomponents, Consistency of Interests (CI) and Perseverance of Effort (PE). We used Generalized Additive Models (GAM) to analyze nonlinear practice trajectories. CI was positively associated with practice accumulation during early developmental stages up to age 12 years. From age 12 onward, PE became the dominant factor associated with practice. Notably, grit had the most pronounced association on engagement in unstructured practice activities, such as self-training and free play. These findings suggest that grit might impact expertise indirectly by affecting how athletes engage in practice over time. Understanding the differentiated roles of CI and PE in practice accumulation offers valuable insights for talent development programs; we emphasize the importance of fostering psychological traits that support sustained commitment and resilience in athletes.
Association between Perfluoroalkyl and Polyfluoroalkyl Substances and Women’s Infertility, NHANES 2013–2016
Perfluoroalkyl and polyfluoroalkyl substances (PFASs) are widely used in consumer products. However, the role of PFAS in infertility is still poorly understood. A total of 788 women from the 2013–2016 nationally representative NHANES were included to explore the association between PFAS exposure and self-reported infertility. Six PFAS, including PFDE, PFNA, PFHxS, n-PFOA, n-PFOS, and Sm-PFOS, were detected by online SPE-HPLC-TIS-MS/MS. We used the generalized linear regression model (GLM), generalized additive models (GAM), and Bayesian kernel machine regression (BKMR) to assess the single effects, non-linear relationships, and mixed effects on women’s infertility, respectively. The prevalence of self-reported infertility was 15.54% in this study. In GLM, n-PFOA showed a negative association with self-reported infertility in women for the Q3 (OR: 0.396, 95% CI: 0.119, 0.788) and Q4 (OR: 0.380, 95% CI: 0.172–0.842) compared with Q1 (p for trend = 0.013). A negative trend was also observed in n-PFOS and ∑PFOS (p for trend < 0.05). In GAM, a non-linear relationship was revealed in Sm-PFOS, which exhibits a U-shaped relationship. The BKMR model indicated that there might be a joint effect between PFAS and women’s infertility, to which PFNA contributed the highest effect (PIP = 0.435). Moreover, age stratification analysis showed a different dose–response curve in under and above 35 years old. Women under the age of 35 have a more noticeable U-shaped relationship with infertility. Therefore, the relatively low level of mixed PFAS exposure was negatively associated with self-reported infertility in women in general, and the impact of PFAS on infertility may vary among women of different age groups. Further studies are needed to determine the etiological relationship.
PFAS Concentrations and Cardiometabolic Traits in Highly Exposed Children and Adolescents
Background: Residents of a large area of north-eastern Italy were exposed for decades to high concentrations of perfluoroalkyl and polyfluoroalkyl substances (PFAS) via drinking water. Despite the large amount of evidence in adults of a positive association between serum PFAS and metabolic outcomes, studies focusing on children and adolescents are limited. We evaluated the associations between serum PFAS concentrations that were quantifiable in at least 40% of samples and lipid profile, blood pressure (BP) and body mass index (BMI) in highly exposed adolescents and children. Methods: A cross-sectional analysis was conducted in 6669 adolescents (14–19 years) and 2693 children (8–11 years) enrolled in the health surveillance program of the Veneto Region. Non-fasting blood samples were obtained and analyzed for perfluorooctanoic acid (PFOA), perfluorooctane sulfonate (PFOS), perfluorohexanesulfonic acid (PFHxS), perfluorononanoic acid (PFNA), total cholesterol (TC), high-density lipoprotein cholesterol (HDL-C) and triglycerides. Low-density lipoprotein cholesterol (LDL-C) was calculated. Systolic and diastolic BP were measured, and BMI z-score accounting for age and sex was estimated. The associations between ln-transformed PFAS (and categorized into quartiles) and continuous outcomes were assessed using generalized additive models. The weighted quantile sum regression approach was used to assess PFAS-mixture effects for each outcome. Analyses were stratified by gender and adjusted for potential confounders. Results: Among adolescents, significant associations were detected between all investigated PFAS and TC, LDL-C, and to a lesser extent HDL-C. Among children, PFOS and PFNA had significant associations with TC, LDL-C and HDL-C, while PFOA and PFHxS had significant associations with HDL-C only. Higher serum concentrations of PFAS, particularly PFOS, were associated with lower BMI z-score. No statistically significant associations were observed between PFAS concentrations and BP. These results were confirmed by the multi-pollutant analysis. Conclusions: Our study supports a consistent association between PFAS concentration and serum lipids, stronger for PFOS and PFNA and with a greater magnitude among children compared to adolescents, and a negative association of PFAS with BMI.
Key HPI axis receptors facilitate light adaptive behavior in larval zebrafish
The vertebrate stress response (SR) is mediated by the hypothalamic–pituitary–adrenal (HPA) axis and contributes to generating context appropriate physiological and behavioral changes. Although the HPA axis plays vital roles both in stressful and basal conditions, research has focused on the response under stress. To understand broader roles of the HPA axis in a changing environment, we characterized an adaptive behavior of larval zebrafish during ambient illumination changes. Genetic abrogation of glucocorticoid receptor ( nr3c1) decreased basal locomotor activity in light and darkness. Some key HPI axis receptors ( mc2r [ACTH receptor], nr3c1 ), but not nr3c2 (mineralocorticoid receptor), were required to adapt to light more efficiently but became dispensable when longer illumination was provided. Such light adaptation was more efficient in dimmer light. Our findings show that the HPI axis contributes to the SR, facilitating the phasic response and maintaining an adapted basal state, and that certain adaptations occur without HPI axis activity.
Generalized models for quantifying laterality using functional transcranial Doppler ultrasound
We consider how analysis of brain lateralization using functional transcranial Doppler ultrasound (fTCD) data can be brought in line with modern statistical methods typically used in functional magnetic resonance imaging (fMRI). Conventionally, a laterality index is computed in fTCD from the difference between the averages of each hemisphere's signal within a period of interest (POI) over a series of trials. We demonstrate use of generalized linear models (GLMs) and generalized additive models (GAM) to analyze data from individual participants in three published studies (N = 154, 73 and 31), and compare this with results from the conventional POI averaging approach, and with laterality assessed using fMRI (N = 31). The GLM approach was based on classic fMRI analysis that includes a hemodynamic response function as a predictor; the GAM approach estimated the response function from the data, including a term for time relative to epoch start (simple GAM), plus a categorical index corresponding to individual epochs (complex GAM). Individual estimates of the fTCD laterality index are similar across all methods, but error of measurement is lowest using complex GAM. Reliable identification of cases of bilateral language appears to be more accurate with complex GAM. We also show that the GAM‐based approach can be used to efficiently analyze more complex designs that incorporate interactions between tasks. Transcranial functional Doppler Ultrasound has been used to assess brain lateralization, but the methods used to extract a laterality index (LI) have involved simple averaging over a period of interest. Here, we compare results from that method with results from a generalized linear models (GLM) approach similar to that used in functional magnetic resonance imaging (fMRI), as well as generalized additive models (GAM) to estimate the cerebral blood flow response. All methods give similar estimates for the mean LI, but error of measurement is much reduced with GAM.
Post-Fire Forest Pulse Recovery: Superiority of Generalized Additive Models (GAM) in Long-Term Landsat Time-Series Analysis
Wildfires are increasing globally and pose major challenges for assessing post-fire vegetation recovery and ecosystem resilience. We analyzed long-term Landsat time series in two contrasting fire-prone ecosystems in the United States and Australia. Vegetation area was extracted using the Enhanced Vegetation Index (EVI) with Otsu thresholding. Recovery to pre-fire baseline levels was modeled using linear, logistic, locally estimated scatterplot smoothing (LOESS), and generalized additive models (GAM), and their performance was compared using multiple metrics. The results indicated rapid recovery of Australian forests to baseline levels, whereas this was not the case for forests in the United States. Among climatic factors, temperature was the dominant parameter in Australia (Spearman ρ = 0.513, p < 10−8), while no climatic variable significantly influenced recovery in California. Methodologically, GAM consistently performed best in both regions due to its success in capturing multiphase and heterogeneous recovery patterns, yielding the lowest values of AIC (United States: 142.89; Australia: 46.70) and RMSE_cv (United States: 112.86; Australia: 2.26). Linear and logistic models failed to capture complex recovery dynamics, whereas LOESS was highly sensitive to noise and unstable for long-term prediction. These findings indicate that post-fire recovery is inherently nonlinear and ecosystem-specific and that simple models are insufficient for accurate estimation, with GAM emerging as an appropriate method for assessing vegetation recovery using remote sensing data. This study provides a transferable approach using remote sensing and GAM to monitor forest resilience under accelerating global fire regimes.