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Soybean is the world’s leading source of vegetable protein and demand for its seed continues to grow. Breeders have successfully increased soybean yield, but the genetic architecture of yield and key agronomic traits is poorly understood. We developed a 40-mating soybean nested association mapping (NAM) population of 5,600 inbred lines that were characterized by single nucleotide polymorphism (SNP) markers and six agronomic traits in field trials in 22 environments. Analysis of the yield, agronomic, and SNP data revealed 23 significant marker-trait associations for yield, 19 for maturity, 15 for plant height, 17 for plant lodging, and 29 for seed mass. A higher frequency of estimated positive yield alleles was evident from elite founder parents than from exotic founders, although unique desirable alleles from the exotic group were identified, demonstrating the value of expanding the genetic base of US soybean breeding.

From a global viewpoint, a number of challenges need to be met for sustainable rice production: (i) increasingly severe occurrence of insects and diseases and indiscriminate pesticide applications; (ii) high pressure for yield increase and overuse of fertilizers; (iii) water shortage and increasingly frequent occurrence of drought; and (iv) extensive cultivation in marginal lands. A combination of approaches based on the recent advances in genomic research has been formulated to address these challenges, with the long-term goal to develop rice cultivars referred to as Green Super Rice. On the premise of continued yield increase and quality improvement, Green Super Rice should possess resistances to multiple insects and diseases, high nutrient efficiency, and drought resistance, promising to greatly reduce the consumption of pesticides, chemical fertilizers, and water. Large efforts have been focused on identifying germplasms and discovering genes for resistance to diseases and insects, N- and P-use efficiency, drought resistance, grain quality, and yield. The approaches adopted include screening of germplasm collections and mutant libraries, gene discovery and identification, microarray analysis of differentially regulated genes under stressed conditions, and functional test of candidate genes by transgenic analysis. Genes for almost all of the traits have now been isolated in a global perspective and are gradually incorporated into genetic backgrounds of elite cultivars by molecular marker-assisted selection or transformation. It is anticipated that such strategies and efforts would eventually lead to the development of Green Super Rice.

Summary The genetic improvement of rice eating and cooking quality (ECQ) is an important goal in rice breeding. It is important to understand the genetic regulation of ECQ at the genomic level for effective breeding to improve ECQ. However, the mechanisms underlying the improvement of ECQ of indica and japonica cultivars in southern China remain unclear. In this study, 290 rice cultivars (155 indica and 135 japonica cultivars) bred in southern China in the past 30 years were collected. Physicochemical indicators, namely, apparent amylose content (AAC), protein content (PC), lipid content and taste value, were measured and correlation analysis was performed. A decrease in AAC and PC was a crucial factor for the ECQ improvement of the rice cultivars in southern China. Genome‐wide association analysis and selective domestication analysis preliminarily clarified that the comprehensive utilization of major and minor genes was an important genetic basis for improvement of ECQ. An elite allele, RAmy1AA, with potential application in breeding to improve starch viscosity characteristics and ECQ, was mined. The Wxb/OsmtSSB1LT/OsDML4G/RPBFT/Du3T and Wxb/OsEro1T/Glup3G/OsNAC25G/OsBEIIbC/RAmy1AA/FLO12A gene modules, neither of which have been widely used, are proposed as the optimal allele combinations for ECQ improvement of indica and japonica cultivars in southern China. The results clarify the genetic regulation of rice ECQ improvement in southern China and provide novel genetic resources and breeding strategies for ECQ improvement in rice.

Studies on the improvement of hops (Humulus lupulus) in Brazil are recent and seek to establish self-sufficiency in production. Knowledge of the variability of genotypes available in the country is of fundamental importance for the development of a hop improvement program. The objective of the research was to characterize and identify hop parents with agronomic and brewing potential for the Planalto Catarinense region, Brazil. The randomized block design arranged in a 3x4 factorial scheme was used with 12 treatments: (Factor 1: three years of cultivation (2019, 2020 and 2021) and combined with factor: four genotypes (Cascade, Chinook, Columbus and Hallertau). The characters evaluated were fresh mass of plants (MFP, g), green mass of cones (MTV, g), dry mass of cones (MSC, g), alpha-acid content (ALFA, %) and production (PROD, g per plant). The Hallertauer genotype showed better performance and differentiated behavior for the characters of fresh mass of plants, dry mass of cones and production, when compared to the others. Thus, from these results it was observed that there is variation available for the genetic improvement of hops for these characters, a factor that will allow obtaining productive gains in the development of new cultivars, based on this promising genotype. RESUMO: Os estudos visando o melhoramento de lúpulo (Humulus lupulus) no Brasil são recentes e buscam estabelecer a autossuficiência da produção. O conhecimento da variabilidade dos genótipos disponíveis no país é de fundamental importância para o desenvolvimento de um programa de melhoramento de lúpulo. O objetivo do trabalho foi identificar genitores de lúpulo com potencial agronômico e cervejeiro para o Planalto Catarinense, Brasil. Foi utilizado o delineamento em blocos casualizados em esquema fatorial 3x4 com 12 tratamentos: Fator 1: três anos de cultivo (2019, 2020 e 2021) e combinado com o fator 2: quatro genótipos (Cascade, Chinook, Columbus e Hallertau). Os caracteres avaliados foram a massa fresca de plantas (MFP, g), massa verde de cones (MTV, g), a massa seca de cones (MSC, g), os teores de alfa-ácidos (ALFA, %) e a produção (PROD, g per planta). O genótipo Hallertauer demonstrou melhor desempenho e comportamento diferenciado para os caracteres de massa fresca de plantas, massa seca de cones e produção, quando comparado aos demais. Assim, a partir destes resultados observou-se que, existe variação disponível ao melhoramento genético do lúpulo para esses caracteres, fator que permitirá obter ganhos produtivos no desenvolvimento de novas cultivares, a partir deste genótipo promissor.

The study highlights the adaptability and potential of Eucalyptus pellita for forestry applications in Brazil. It utilized a randomized block design with linear plots of five plants across five replications, establishing an experimental trial with 175 progenies from several provenances in May 2019. The trial was conducted in Lençóis Paulista, São Paulo State, Brazil, which has an Aw (tropical wet-dry climate) climate according to Köppen´s classification and followed the commercial forestry practices of the region. Three years after planting, survival, height (H) and diameter at breast height (DBH) were measured, with the main annual increment calculated using a shape factor of 0.5. The survival rate reached 95%, with an average tree height of 12.6 m, DBH of 10 cm, and a volume mean annual increment of 34 m3ha− 1y− 1. We observed a provenance effect, with higher breeding values in improved material compared to wild (unimproved) material. Thinning strategies were initiated by plotting additive genetic effects for the DBH trait of families and provenance, resulting in the identification of four groups empirically divided according to the curve’s inflection point. Thinning intensity of 70 to 80% of the trees was found effective in maintaining both genetic gain and a good effective population size, regardless of whether selection within families was considered. Overall, the study emphasizes the importance of considering several factors, including provenance effects and selection strategies, for sustainable forestry practices. Provenance effects play a significant role in tree breeding programs. However, even within poor-performing provenance, it is possible to select trees with high breeding values.

Selection and use of molecular markers for evaluation of DNA polymorphism in plants are couple of the most important approaches in the field of molecular genetics. The assessment of genetic diversity using morphological markers is not sufficient due to little differentiating traits among the species, genera or their individuals. Morphological markers are not only highly influenced by environmental factors but skilled assessment is also prerequisite to find the variations in plant genetic resources. Therefore, molecular markers are considered as efficient tools for detailed DNA based characterization of fruit crops. Molecular markers provide new directions to the efforts of plant breeders particularly in genetic variability, gene tags, gene localization, taxonomy, genetic diversity, phylogenetic analysis and also play an important role to decrease the time required for development of new and excellent cultivars. The success of molecular markers technology in genetic improvement programs depends on the close relationship among the plant breeders, biotechnologists, skilled manpower and good financial support. The present review describes application and success of molecular markers technology used for genetic improvement in different fruit crops.

CRISPR-Cas9 has emerged as a powerful tool in livestock breeding, enabling precise genetic modifications to address genetic diseases, enhance productivity, and develop disease-resistant animal breeds. A thorough analysis of previous research highlights the potential of CRISPR-Cas9 in overcoming genetic disorders by targeting specific mutations in genes. Furthermore, its integration with reproductive biotechnologies and genomic selection facilitates the production of gene-edited animals with high genomic value, contributing to genetic enhancement and improved productivity. Additionally, CRISPR-Cas9 opens new avenues for developing disease-resistant livestock and creating innovative breeding models for high-quality production. A key trend in the field is the development of multi-sgRNA vectors to correct mutations in various genes linked to productivity traits or certain diseases within individual genomes, thereby increasing resistance in animals. However, despite the potential advantages of CRISPR-Cas9, public acceptance of genetically modified agricultural products remains uncertain. Would consumers be willing to purchase such products? It is essential to advocate for bold and innovative research into genetically edited animals, with a focus on safety, careful promotion, and strict regulatory oversight to align with long-term goals and public acceptance. Continued advancements in this technology and its underlying mechanisms promise to improve poultry products and genetically modified livestock. Overall, CRISPR-Cas9 technology offers a promising pathway for advancing livestock breeding practices, with opportunities for genetic improvement, enhanced disease resistance, and greater productivity.

Global climate crisis and severe water scarcity worldwide demand alternative genotypes that allow an adequate balance between production and water use while ensuring benefits for foresters. The genetic improvement of water use efficiency (WUE) in forest plantations could reduce water use without compromising yield. Above-ground biomass (AGB), saw-wood volume up to small-end diameter of 15 cm (V15), wood density (WD) and intrinsic WUE (WUEi) from wood carbon isotopic discrimination was evaluated in forty open-pollinated families of G. arborea grown in a tropical dry forest known as a water-limited environment, to select superior genotypes considering a balance in wood production and water use. Heritability of open-pollinated family means were moderate with values of h2f = 0.554 for AGB, h2f = 0.541 for V15, h2f = 0.608 for WD and h2f = 0.495 for WUEi. Significant genetic correlations between both WD and WUEi and production traits (p < 0.05) and a nonsignificant genetic correlation between WD and WUEi were found. Although production traits and WUEi showed moderate narrow-sense and family means heritabilities, considerable responses to selection of up to 13.7% in AGB, 15.5% in V15, 2.5% in WD and 3.0% in WUEi could be achieved from intensive selection of superior families. Our results showed that it may be possible balancing wood production and WUE by selecting open-pollinated families of G. arborea with higher V15 and WUEi. The deployment of these superior families can be used as a forest management strategy to adapt the species to future drought scenarios associated with global climate change.

The objective of this review is to bring information about innovations and technologies that, through genetic improvement, are being used to improve the sustainability and productivity of agricultural crops, improve human nutrition, as well as conservation and decontamination of soils.  Bioremediation consists of using microorganisms that have the ability to modify or decompose certain pollutants, with the possibility of increasing their activity through genetic engineering, building new strains for the transformation of pollutants into inert substances. Genetic improvement is seeking to develop cultivars that are more tolerant to periods of water deficit. Plant biofortification consists of varieties of improved plants that have a higher content of vitamins and minerals, which are obtained through genetic improvement. Thus, biotechnology is once again essential for world agricultural production and can bring a series of other benefits to society.

The multi-purpose indigenous village chickens (IVCs) are kept in low- and middle-income countries. IVCs are hardy and are resilient to disease, hostile environment, global warming, and climate change. The IVCs are a little impacted by anthropogenic effects; consequently, they possess high genetic and phenotypic diversity. Likewise, the genetic structure of IVCs is principally shaped by natural selection, which enables them to accumulate high genetic polymorphism and to adaptively radiate. Regardless of this, the genetic wealth of IVCs has been eroded by indiscriminate crossbreeding. Emerging infectious and non-infectious diseases, flawed assumptions, predation, inadequate nutrition, poorly maintained night enclosures, and underdeveloped market infrastructure, and the overlooked multiple-use values and unique attributes of IVCs have threatened their mere survival. The IVCs lay a few eggs and produce less meat, which cannot meet the growing (existing) demand. However, the demand for IVC products is growing attributable to the flavor and texture of eggs and meat, and they are well-aligned with the subsistence farming system. The several use values and ecosystem services provided by IVCs have been increasingly realized. Enhanced production can be attained through sustainable use of local (genetic) resources and by scaling up and out best practices. Genetic improvement needs to mainly rely upon IVC genetic resources and should have to match the genotype with the environment. Moreover, it has to maintain the genetic polymorphism that has been accumulated for time immemorial to respond to unanticipated changes in the production system and consumers’ demand. In this review, enhanced management, selection strategies, and genetic crosses including the crossing of commercial chickens with red junglefowl have been proposed to sustainably intensify the IVC production system.