Explore the vast range of titles available.

Subsidization of predator populations increases predation pressure on prey species, which is exacerbated when natural resources are scarce. Estimating the frequency of predation by subsidized predators on vulnerable species, especially low‐density, long‐lived species such as the federally threatened Mojave desert tortoise (Gopherus agassizii), allows landscape managers to evaluate the need for actions like reducing subsidies, discouraging predation by taste aversion, or predator removal. Most studies of Mojave desert tortoise predation have relied on morphological analysis to identify hard parts in predator scat. Here, we developed and validated a qPCR assay to test for the presence of Mojave desert tortoise in DNA extracted from scat and pellets. We used the assay to detect tortoise DNA in scat and pellets collected in a conservation easement adjacent to Boulder City, Nevada, from three Mojave desert tortoise predators: coyotes (Canis latrans), desert kit foxes (Vulpes macrotis arsipus), and common ravens (Corvus corax)—all of which consume anthropogenic resources. We compared the results of our qPCR assay to results from morphological analysis of the same samples and found that the qPCR method is much more sensitive at detecting the presence of tortoise remains. Although neither method can determine whether consumption was the result of predation or scavenging, nor how many individual tortoises were consumed, our findings indicate that conservation managers may benefit from focusing efforts on reducing subsidies that attract and support predators and on reducing tortoise mortality from predation. Coyotes, desert kit foxes, and ravens are all known to consume anthropogenic resources and their populations can be subsidized by these resources. Subsidized populations can, in turn, exert higher predation pressure on prey species. We designed and implemented a qPCR method to detect Mojave desert tortoise remains in canid scat and raven pellets, and compared rates of detection between the qPCR method and the traditional morphological analysis of hard parts method. We found that the qPCR method was more sensitive at detecting tortoise remains in excrement. Although neither the qPCR method nor the morphological method can reveal how many tortoises were consumed or if consumption was the result of predation or scavenging, the larger number of qPCR‐positive scats and pellets is consistent with a hypothesis of higher consumption than indicated by hard parts analysis. This result suggests that landscape managers in the Mojave Desert could improve conservation of the desert tortoise by focusing efforts on reducing the presence of anthropogenic resources that can attract and sustain predators, as well as on limiting predation by conditioned taste aversion. In the future, our study can be replicated and extended to evaluate the effects of management practices on tortoise consumption.

We developed a simulation method, known as life-stage simulation analysis (LSA) to measure potential effects of uncertainty and variation in vital rates on population growth (λ ) for purposes of species conservation planning. Under LSA, we specify plausible or hypothesized levels of uncertainty, variation, and covariation in vital rates for a given population. We use these data under resampling simulations to establish random combinations of vital rates for a large number of matrix replicates and finally summarize results from the matrix replicates to estimate potential effects of each vital rate on λ in a probability-based context. Estimates of potential effects are based on a variety of summary statistics, such as frequency of replicates having the same vital rate of highest elasticity, difference in elasticity values calculated under simulated conditions vs. elasticities calculated using mean invariant vital rates, percentage of replicates having positive population growth, and variation in λ explained by variation in each vital rate. To illustrate, we applied LSA to vital rates for two vertebrates: desert tortoise (Gopherus agassizii) and Greater Prairie Chicken (Tympanuchus cupido). Results for the prairie chicken indicated that a single vital rate consistently had greatest effect on population growth. Results for desert tortoise, however, suggested that a variety of life stages could have strong effects on population growth. Additional simulations for the Greater Prairie Chicken under a hypothetical conservation plan also demonstrated that a variety of vital rates could be manipulated to achieve desired population growth. To improve the reliability of inference, we recommend that potential effects of vital rates on λ be evaluated using a probability-based approach like LSA. LSA is an important complement to other methods that evaluate vital-rate effects on λ including classical elasticity analysis, retrospective methods of variance decomposition, and simulation of the effects of environmental stochasticity.

Increasingly, renewable energy comprises a larger share of global energy production. Across the western United States, public lands are being developed to support renewable energy production. Where there are conflicts with threatened or endangered species, translocation can be used in an attempt to mitigate negative effects. For the threatened Mojave desert tortoise (Gopherus agassizii), we sought to compare habitat- and space-use patterns between short-distance translocated, resident, and control groups. We tested for differences in home range size based on utilization distributions and used linear mixed-effects models to compare space-use intensity, while controlling for demographic and environmental variables. In addition, we examined mean movement distances as well as home range overlap between years and for male and female tortoises in each study group. During the first active season post-translocation, home range size was greater and space-use intensity was lower for translocated tortoises than resident and control groups. These patterns were not present in the second season. In both years, there was no difference in home range size or space-use intensity between control and resident groups. Translocation typically resulted in one active season of questing followed by a second active season characterized by space-use patterns that were indistinguishable from control tortoises. Across both years, the number of times a tortoise was found in a burrow was positively related to greater space-use intensity. Minimizing the time required for translocated tortoises to exhibit patterns similar to non-translocated individuals may have strong implications for conservation by reducing exposure to adverse environmental conditions and predation. With ongoing development, our results can be used to guide future efforts aimed at understanding how translocation strategies influence patterns of animal space use.

Translocation of animals, especially for threatened and endangered species, is a currently popular but very challenging activity. We translocated 158 adult Agassiz’s desert tortoises (Gopherus agassizii), a threatened species, from the National Training Center, Fort Irwin, in the central Mojave Desert in California, USA, to 4 plots as part of a long-distance, hard-release, mitigation-driven translocation to prevent deaths from planned military maneuvers. We monitored demographic and behavioral variables of tortoises fitted with radio-transmitters from 2008 to 2018. By the end of the project, 17.72% of tortoises were alive, 65.82% were dead, 15.19% were missing, and 1.27% were removed from the study because they returned to Fort Irwin. Mortality was high during the first 3 years: >50% of the released animals died, primarily from predation. Thereafter, mortality declined but remained high. After 10.5 years, survival was highest, 37.50% (15/40), on the plot closest to original home sites, whereas from 2.56% to 23.68% remained alive on the other 3 release plots. Surviving tortoises settled early, repeatedly using locations where they constructed burrows, compared with tortoises that died or disappeared. Models of behavioral and other variables indicated that numbers of repeatedly used locations (burrows) were a driver of survival throughout the study, although plot location, size and sex of tortoises, and distance traveled were contributors, especially during early years. Because >50% mortality occurred, we considered this translocation unsuccessful. The study area appeared to be an ecological sink with historical and current anthropogenic uses contributing to habitat degradation and a decline in both the resident and released tortoises. Our findings will benefit design and selection of future translocation areas.

ContextLinear anthropogenic barriers may reduce structural landscape connectivity for wildlife.ObjectivesUsing graph-based connectivity indices, we modeled the potential impacts of linear barriers on structural connectivity and on individual patch importance at different biologically justified dispersal distance thresholds for the Sonoran desert tortoise, a wide-ranging species for which anthropogenic barriers may be reducing structural landscape connectivity.MethodsTo characterize the potential impacts of barriers on structural connectivity for the Sonoran desert tortoise, we compared network compartmentalization, individual habitat patch importance, and the spatial distribution of important habitat patches for models of structural connectivity reflecting the landscape prior to the development of linear barriers to models depicting current linear barriers in the landscape at different distance thresholds.ResultsLinear barriers fragmented the habitat patch network into a minimum of 239 patch components. Compartmentalization increased little as dispersal distance thresholds exceeded 10 km. In barrier simulations, patch importance mostly decreased and the spatial distribution of important patches shifted south.ConclusionBarriers are limiting structural connectivity for Sonoran desert tortoises and may prevent dispersal events, rescue effects in the event of localized extinctions, and successful range shift in response to climate change. Management efforts targeted at enhancing connectivity for ecological processes or movements occurring at 5–10 km may enhance the potential for longer-distance movements or generational dispersal occurring at a greater extent. Our methods provide an efficient framework for assessing changes in structural connectivity on a landscape extent that may be applied to addressing different problems or questions related to landscape connectivity.

The threatened Mojave desert tortoise ( Gopherus agassizii ) exhibits temperature-dependent sex determination, and individuals appear externally sexually monomorphic until sexual maturity. A non-surgical sex identification method that is suitable for a single in situ encounter with hatchlings is essential for minimizing handling of wild animals. We tested (1) whether plasma testosterone quantified by enzyme-linked immunosorbent assay differentiated males from females in 0–3 month old captive hatchlings, and (2) whether an injection of follicle-stimulating hormone (FSH) differentially elevates testosterone in male hatchlings to aid in identifying sex. We validated sex by ceolioscopic (laparoscopic) surgery. We then fit the testosterone concentrations to lognormal distributions and identified the concentration below which individuals are more likely female, and above which individuals are more likely male. Using a parametric bootstrapping procedure, we estimated a 0.01–0.04% misidentification rate for naïve testosterone samples, and a 1.26–1.39% misidentification rate for challenged (post-FSH injection) testosterone samples. Quantification of plasma testosterone concentration from small volume (0.1 mL) blood samples appears to be a viable, highly accurate method to identify sex of 0–3 month old hatchlings and could be a valuable tool for conservation measures and investigation of trends and variation in sex ratios for in situ wild nests.

We studied the plant resource use between and within populations of desert tortoise (Gopherus agassizii) across a precipitation gradient in the Sonoran Desert of Arizona. The carbon and nitrogen stable isotope values in animal tissues are a reflection of the carbon and nitrogen isotope values in diet, and consequently represent a powerful tool to study animal feeding ecology. We measured the delta 13C and delta 15N values in the growth rings on the shells of tortoises in different populations to characterize dietary specialization and track tortoise use of isotopically distinct C4/CAM versus C3 plant resources. Plants using C3 photosynthesis are generally more nutritious than C4 plants and these trait differences can have important growth and fitness consequences for consumers. We found that dietary specialization decreases in successively drier and less vegetated sites, and that broader population niche widths are accompanied by an increase in the dietary variability between individuals. Our results highlight how individual consumer plant resource use is bounded under a varying regime of precipitation and plant productivity, lending insight into how intra-individual dietary specialization varies over a spatial scale of environmental variability.

Desert tortoises play ecologically significant roles, including plant seed dispersal and mineral cycling, and yet little is known about microbial members that are critical to their gut and overall health. Tortoises consume recalcitrant plant material, which their gut microbiota degrades and converts into usable metabolites and nutrients for the tortoise. Findings from tortoise gut microbiomes may translate well into biotechnological applications as these microbes have evolved to efficiently degrade recalcitrant substrates and generate useful products. In this study, we cultivated microbial communities from desert tortoise fecal samples following a targeted anaerobic enrichment for microbes involved in deconstruction and utilization of plant biomass. We employed 16S rRNA amplicon sequencing to compare cultivated communities to initial fecal source material and found high abundances of Firmicutes and Bacteroidota typically associated with biomass deconstruction in all cultivated samples. Significantly decreased microbial diversity was observed in the cultivated microbial communities, yet several key taxa thrived in lignocellulose enrichments, including Lachnospiraceae and Enterococcus . Additionally, cultivated communities produced short-chain fatty acids under anaerobic conditions, and their growth and metabolic output provide evidence of their viability in the initial fecal communities. Overall, this study adds to the limited understanding of reptilian herbivore microbiota, and offers a path towards biotechnological translation based on the ability of the cultivated communities to convert lignocellulose directly to acetate, propionate, and butyrate.

1. In spite of growing reliance on translocations in wildlife conservation, translocation efficacy remains inconsistent. One factor that can contribute to failed translocations is releasing animals into poor-quality or otherwise inadequate habitat. 2. Here, we used a targeted approach to test the relationship of habitat features to post-translocation dispersal and survival of juvenile Mojave desert tortoises Gopherus agassizii. 3. We selected three habitat characteristics – rodent burrows, substrate texture (prevalence and size of rocks) and washes (ephemeral river beds) – that are tied to desert tortoise ecology. At the point of release, we documented rodent burrow abundance, substrate texture and wash presence and analysed their relationship to the maximum dispersal. We also documented the relative use by each individual for each habitat characteristic and analysed their relationships with survival and fatal encounters with a predator in the first year after release. 4. In general, the presence of refugia or other areas that enabled animals to avoid detection, such as burrows and substrate, decreased the overall mortality as well as predator-mediated mortality. The presence of washes and substrate that enhanced the tortoises' ability to avoid detection also associated with the reduced dispersal away from the release site. These results indicate an important role for all three measured habitat characteristics in driving dispersal, survival or fatal encounters with a predator in the first year after translocation. 5. Synthesis and applications. Resource managers using translocations as a conservation tool should prioritize acquiring data linking habitat to fitness. In particular, for species that depend on avoiding detection, refuges such as burrows and habitat that improved concealment had notable ability to improve the survival and dispersal. Our study on juvenile Mojave desert tortoises showed that refuge availability or the distributions of habitat appropriate for concealment are important considerations for identifying translocation sites for species highly dependent on crypsis, camouflage or other forms of habitat matching.

Most directly transmitted infections require some form of close contact between infectious and susceptible hosts to spread. Often disease models assume contacts are equal and use mean field estimates of transmission probability for all interactions with infectious hosts. Such methods may inaccurately describe transmission when interactions differ substantially in their ability to cause infection. Understanding this variation in transmission risk may be critical to properly model and manage some infectious diseases. In this study, we investigate how varying exposure and transmission may be key to understanding disease dynamics in the threatened desert tortoise Gopherus agassizii. We created heterogeneity in Mycoplasma agassizii exposure (the putative bacterial agent of a respiratory disease) by varying the duration of interactions between naturally infected and uninfected captive desert tortoises. Using qPCR, we identified new infections and compared models of transmission probability as a function of contact duration and pathogen load. We then examined the contact patterns of a wild tortoise population using proximity loggers to identify heterogeneity in contact duration. The top‐ranked model predicting M. agassizii transmission included a dose term defined as the product of the number of days in proximity to an infected host and the infection level of that host. Models predicted low transmission probability for short interactions, unless the infectious host had a high load of M. agassizii: such hosts were predicted to transmit infection at higher rates with any amount of contact. We observed predominantly short‐lived interactions in a free‐ranging tortoise population and thus, expect transmission patterns in this population to vary considerably with the frequency and duration of high infection levels. Mean field models may misrepresent natural transmission patterns in this and other populations depending on the distribution of high‐risk contact and shedding events. Rapid outbreaks in generally solitary species may result from changes to their naturally low‐risk contact patterns or due to increases in the frequency of severe infections or super‐shedding events – population characteristics that should be further investigated to develop effective management strategies.