Explore the vast range of titles available.

Wild stocks of Pacific salmonids have experienced sharp declines in abundance over the past century. Consequently, billions of fish are released each year for enhancing abundance and sustaining fisheries. However, the beneficial role of this widely used management practice is highly debated since fitness decrease of hatchery-origin fish in the wild has been documented. Artificial selection in hatcheries has often been invoked as the most likely explanation for reduced fitness, and most studies to date have focused on finding signatures of hatchery-induced selection at the DNA level. We tested an alternative hypothesis, that captive rearing induces epigenetic reprogramming, by comparing genome-wide patterns of methylation and variation at the DNA level in hatchery-reared coho salmon (Oncorhynchus kisutch) with those of their wild counterparts in two geographically distant rivers. We found a highly significant proportion of epigenetic variation explained by the rearing environment that was as high as the one explained by the river of origin. The differentially methylated regions show enrichment for biological functions that may affect the capacity of hatcheryborn smolts to migrate successfully in the ocean. Shared epigenetic variation between hatchery-reared salmon provides evidence for parallel epigenetic modifications induced by hatchery rearing in the absence of genetic differentiation between hatchery and natural-origin fish for each river. This study highlights epigenetic modifications induced by captive rearing as a potential explanatory mechanism for reduced fitness in hatchery-reared salmon.

Background Aeromonas hydrophila is an opportunistic pathogen. Thus, it has received significant attention mainly in the fish sectors with high production scales. Nile tilapia broodstock confined in the environment of fish hatcheries can be stressed. Hence, they are vulnerable to A. hydrophila. Results Sequencing of the gyr B gene revealed the presence of 18 different A. hydrophila strains (kdy 10,620–10,637), which were deposited in the NCBI under accession numbers ON745861–ON745878. The median lethal doses of the isolates ranged from 2.62 × 10 4 to 3.02 × 10 6  CFU/mL. Antibiotic resistant genes, sulfonamide (sul1) and tetracycline (tetA) were found in the eighteen isolates . Approximately 83.3% of A. hydrophila strains were sensitive to ciprofloxacin and florfenicol. Further, eight A. hydrophila strains had high MDR indices at 0.27–0.45. All isolates presented with hemolysin activity. However, only 72.22% of them had proteolytic activity, and only 61.11% could form biofilms. Bacterial isolates harbored different pattern virulence genes, the heat-stable cytotonic enterotoxin (ast), cytotoxic enterotoxin (act), and hemolysin (hly) genes were the most prevalent. Also, a trial to inhibit bacterial growth was conducted using titanium dioxide nanoparticles (TiO 2 NPs) with three sizes (13, 32, and 123 nm). If A. hydrophila strains with a high MDR index were tested against TiO 2 NPs (20 µg/mL) for 1, 12, and 24 h, those with a small size had a greater bactericidal action than large ones. Bacterial strains were inhibited at different percentages in response to TiO 2 NP treatment. Conclusions Nile tilapia broodstock, mortality is associated with different A. hydrophila strains , which harbored virulent and MDR genes. Furthermore, TiO 2 NPs had bactericidal activity, thereby resulting in a considerable reduction in bacterial load.

Salmon hatcheries are widely established in British Columbia (BC), Canada, to bolster fish stocks in the province. Although contributing to Canada's multimillion-dollar salmon economy, some view hatcheries as a problem rather than a solution to the widespread decline of BC's wild salmon, and decry more government investment in hatcheries. A recent op-ed by five BC wild salmon advocates, including ecologist Vanessa Minke-Martin (Victoria, Canada) and Raincoast Conservation Foundation wild salmon program director Misty MacDuffee (Pender Island, Canada), highlights hatchery-specific concerns.

In 2007, the US west coast shellfish industry began to feel the effects of unprecedented levels of larval mortality in commercial hatcheries producing the Pacific oysterCrassostrea gigas. Subsequently, researchers at Whiskey Creek Shellfish Hatchery, working with academic and government scientists, showed a high correlation between aragonite saturation state (Ωarag) of inflowing seawater and survival of larval groups, clearly linking increased CO₂ to hatchery failures. This work led the Pacific Coast Shellfish Growers Association (PCSGA) to instrument shellfish hatcheries and coastal waters, establishing a monitoring network in collaboration with university researchers and the US Integrated Ocean Observing System. Analytical developments, such as the ability to monitor Ωaragin real time, have greatly improved the industry's understanding of carbonate chemistry and its variability and informed the development of commercial-scale water treatment systems. These treatment systems have generally proven effective, resulting in billions of additional oyster larvae supplied to Pacific Northwest oyster growers. However, significant challenges remain, and a multifaceted approach, including selective breeding of oyster stocks, expansion of hatchery capacity, continued monitoring of coastal water chemistry, and improved understanding of biological responses will all be essential to the survival of the US west coast shellfish industry.

Several studies have demonstrated lower fitness of salmonids born and reared in a hatchery setting compared to those born in nature, yet broad-scale genome-wide genetic differences between hatchery-origin and natural-origin fish have remained largely undetected. Recent research efforts have focused on using epigenetic tools to explore the role of heritable changes outside of genetic variation in response to hatchery rearing. We synthesized the results from salmonid studies that have directly compared methylation differences between hatchery-origin and natural-origin fish. Overall, the majority of studies found substantial differences in methylation patterns and overlap in functional genomic regions between hatchery-origin and natural-origin fish which have been replicated in parallel across geographical locations. Epigenetic differences were consistently found in the sperm of hatchery-origin versus natural-origin fish along with evidence for maternal effects, providing a potential source of multigenerational transmission. While there were clear epigenetic differences in gametic lines between hatchery-origin and natural-origin fish, only a limited number explored the potential mechanisms explaining these differences. We outline opportunities for epigenetics to inform salmonid breeding and rearing practices and to mitigate for fitness differences between hatchery-origin and natural-origin fish. We then provide possible explanations and avenues of future epigenetics research in salmonid supplementation programs, including: 1) further exploration of the factors in early development shaping epigenetic differences, 2) understanding the functional genomic changes that are occurring in response to epigenetic changes, 3) elucidating the relationship between epigenetics, phenotypic variation, and fitness, and 4) determining heritability of epigenetic marks along with persistence of marks across generations.

To reach the goal of an industrialised macroalgae industry in Norway and other high-cost countries in the near future, a standardised seedling production method to improve quality control and predictability of cultivated biomass is essential. A total of 11 different treatments for seeding twine or rope with meiospores, gametophytes or juvenile sporophytes from the kelp Saccharina latissima were measured for growth (frond length, frond area, biomass yield and density) and protein content after 80 and 120 days at sea. Meiospore- and gametophyte-seeded twines were pre-cultivated in the hatchery for 14–42 days prior to deployment, while juvenile sporophytes of different ages were seeded on ropes directly on the day of deployment using a commercial binder to attach the seedlings. The results showed that seeding with meiospores pre-cultivated in the hatchery for 42 days (S42) before deployment gave significantly longer fronds (77.0 ± 6.7 cm) and a higher biomass yield (7.2 ± 0.1 kg m−1) at sea compared to other treatments. The poorest growth was measured for the direct-seeded sporophytes pre-cultivated in free-floating cultures for 35 days prior to deployment (D35; 34.4 ± 2.4 cm frond length and 1.6 ± 0.4 kg m−1). Image analysis was used to measure the coverage of the twine substrate before deployment, and a correlation was found between substrate coverage and frond length at sea, indicating that this can be used as a tool for quantity and quality control during the hatchery phase and before deployment. The protein content did not reveal any large differences between the treatments after 120 days of cultivation.

The decline in salmon and steelhead populations in the Columbia River Basin has been well documented, as have the decades-long, $9 billion restoration spending efforts by federal and state agencies. These efforts are mainly tied to Endangered Species Act (ESA) mandates for recovery of wild, naturally-spawning threatened or endangered fish species. The impact of these efforts remains poorly understood; many observers, including the federal courts, have long been concerned by the lack of evidence of recovery. Most studies evaluating restoration efforts have examined individual projects for specific species, reaches, or life stages, which limits the ability to make broad inferences at the basin level. There is a need to ask: is there evidence of an overall increase in wild fish abundance associated with the totality of these recovery efforts? To that end, the current study estimates fixed-effects panel regression models of adult returns of four species. Results indicate that restoration spending combined with hatchery production are associated with substantial increases in returning adult fish. Evidence of benefits to wild fish alone, however, require indirect approaches given the commingling of restoration spending with spending on hatchery releases, the impacts of spending on hatchery fish survival, and the density dependence effects of hatchery releases. To accomplish this, the models’ predicted adult returns (both hatchery and wild fish) attributed to both spending and hatchery releases are compared to independent estimates of returning hatchery fish based on hatchery survival estimates (smolt-to-adult ratios). The comparison finds the model-predicted levels of adult returns due to spending and hatchery releases do not exceed the survival-rate based estimates for hatcheries alone, so that we are unable to reject the hypothesis of no benefits to wild fish from the restoration spending.