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"Labeling-machines"
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Latent Autoregressive Student-It/I Prior Process Models to Assess Impact of Interventions in Time Series
2023
With the advent of the “Internet of Things” (IoT), insurers are increasingly leveraging remote sensor technology in the development of novel insurance products and risk management programs. For example, Hartford Steam Boiler’s (HSB) IoT freeze loss program uses IoT temperature sensors to monitor indoor temperatures in locations at high risk of water-pipe burst (freeze loss) with the goal of reducing insurances losses via real-time monitoring of the temperature data streams. In the event these monitoring systems detect a potentially risky temperature environment, an alert is sent to the end-insured (business manager, tenant, maintenance staff, etc.), prompting them to take remedial action by raising temperatures. In the event that an alert is sent and freeze loss occurs, the firm is not liable for any damages incurred by the event. For the program to be effective, there must be a reliable method of verifying if customers took appropriate corrective action after receiving an alert. Due to the program’s scale, direct follow up via text or phone calls is not possible for every alert event. In addition, direct feedback from customers is not necessarily reliable. In this paper, we propose the use of a non-linear, auto-regressive time series model, coupled with the time series intervention analysis method known as causal impact, to directly evaluate whether or not a customer took action directly from IoT temperature streams. Our method offers several distinct advantages over other methods as it is (a) readily scalable with continued program growth, (b) entirely automated, and (c) inherently less biased than human labelers or direct customer response. We demonstrate the efficacy of our method using a sample of actual freeze alert events from the freeze loss program.
Journal Article
Pixel-Wise Crowd Understanding via Synthetic Data
2021
Crowd analysis via computer vision techniques is an important topic in the field of video surveillance, which has wide-spread applications including crowd monitoring, public safety, space design and so on. Pixel-wise crowd understanding is the most fundamental task in crowd analysis because of its finer results for video sequences or still images than other analysis tasks. Unfortunately, pixel-level understanding needs a large amount of labeled training data. Annotating them is an expensive work, which causes that current crowd datasets are small. As a result, most algorithms suffer from over-fitting to varying degrees. In this paper, take crowd counting and segmentation as examples from the pixel-wise crowd understanding, we attempt to remedy these problems from two aspects, namely data and methodology. Firstly, we develop a free data collector and labeler to generate synthetic and labeled crowd scenes in a computer game, Grand Theft Auto V. Then we use it to construct a large-scale, diverse synthetic crowd dataset, which is named as “GCC Dataset”. Secondly, we propose two simple methods to improve the performance of crowd understanding via exploiting the synthetic data. To be specific, (1) supervised crowd understanding: pre-train a crowd analysis model on the synthetic data, then fine-tune it using the real data and labels, which makes the model perform better on the real world; (2) crowd understanding via domain adaptation: translate the synthetic data to photo-realistic images, then train the model on translated data and labels. As a result, the trained model works well in real crowd scenes.Extensive experiments verify that the supervision algorithm outperforms the state-of-the-art performance on four real datasets: UCF_CC_50, UCF-QNRF, and Shanghai Tech Part A/B Dataset. The above results show the effectiveness, values of synthetic GCC for the pixel-wise crowd understanding. The tools of collecting/labeling data, the proposed synthetic dataset and the source code for counting models are available at https://gjy3035.github.io/GCC-CL/.
Journal Article
Novel Deep Learning Domain Adaptation Approach for Object Detection Using Semi-Self Building Dataset and Modified YOLOv4
by
Abdalrazik, Ahmad
,
Gomaa, Ahmed
in
Artificial neural networks
,
background subtraction
,
Classification
2024
Moving object detection is a vital research area that plays an essential role in intelligent transportation systems (ITSs) and various applications in computer vision. Recently, researchers have utilized convolutional neural networks (CNNs) to develop new techniques in object detection and recognition. However, with the increasing number of machine learning strategies used for object detection, there has been a growing need for large datasets with accurate ground truth used for the training, usually demanding their manual labeling. Moreover, most of these deep strategies are supervised and only applicable for specific scenes with large computational resources needed. Alternatively, other object detection techniques such as classical background subtraction need low computational resources and can be used with general scenes. In this paper, we propose a new a reliable semi-automatic method that combines a modified version of the detection-based CNN You Only Look Once V4 (YOLOv4) technique and background subtraction technique to perform an unsupervised object detection for surveillance videos. In this proposed strategy, background subtraction-based low-rank decomposition is applied firstly to extract the moving objects. Then, a clustering method is adopted to refine the background subtraction (BS) result. Finally, the refined results are used to fine-tune the modified YOLO v4 before using it in the detection and classification of objects. The main contribution of this work is a new detection framework that overcomes manual labeling and creates an automatic labeler that can replace manual labeling using motion information to supply labeled training data (background and foreground) directly from the detection video. Extensive experiments using real-world object monitoring benchmarks indicate that the suggested framework obtains a considerable increase in mAP compared to state-of-the-art results on both the CDnet 2014 and UA-DETRAC datasets.
Journal Article
The development of proximity labeling technology and its applications in mammals, plants, and microorganisms
2023
Protein‒protein, protein‒RNA, and protein‒DNA interaction networks form the basis of cellular regulation and signal transduction, making it crucial to explore these interaction networks to understand complex biological processes. Traditional methods such as affinity purification and yeast two-hybrid assays have been shown to have limitations, as they can only isolate high-affinity molecular interactions under nonphysiological conditions or in vitro. Moreover, these methods have shortcomings for organelle isolation and protein subcellular localization. To address these issues, proximity labeling techniques have been developed. This technology not only overcomes the limitations of traditional methods but also offers unique advantages in studying protein spatial characteristics and molecular interactions within living cells. Currently, this technique not only is indispensable in research on mammalian nucleoprotein interactions but also provides a reliable approach for studying nonmammalian cells, such as plants, parasites and viruses. Given these advantages, this article provides a detailed introduction to the principles of proximity labeling techniques and the development of labeling enzymes. The focus is on summarizing the recent applications of TurboID and miniTurbo in mammals, plants, and microorganisms.
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Video Abstract
Journal Article
Applications of Molecular Imprinting Technology in the Study of Traditional Chinese Medicine
2022
Traditional Chinese medicine (TCM) is one of the most internationally competitive industries. In the context of TCM modernization and internationalization, TCM-related research studies have entered a fast track of development. At the same time, research of TCM is also faced with challenges, such as matrix complexity, component diversity and low level of active components. As an interdisciplinary technology, molecular imprinting technology (MIT) has gained popularity in TCM study, owing to the produced molecularly imprinted polymers (MIPs) possessing the unique features of structure predictability, recognition specificity and application universality, as well as physical robustness, thermal stability, low cost and easy preparation. Herein, we comprehensively review the recent advances of MIT for TCM studies since 2017, focusing on two main aspects including extraction/separation and purification and detection of active components, and identification analysis of hazardous components. The fundamentals of MIT are briefly outlined and emerging preparation techniques for MIPs applied in TCM are highlighted, such as surface imprinting, nanoimprinting and multitemplate and multifunctional monomer imprinting. Then, applications of MIPs in common active components research including flavonoids, alkaloids, terpenoids, glycosides and polyphenols, etc. are respectively summarized, followed by screening and enantioseparation. Related identification detection of hazardous components from TCM itself, illegal addition, or pollution residues (e.g., heavy metals, pesticides) are discussed. Moreover, the applications of MIT in new formulation of TCM, chiral drug resolution and detection of growing environment are summarized. Finally, we propose some issues still to be solved and future research directions to be expected of MIT for TCM studies.
Journal Article
Learning from crowdsourced labeled data: a survey
2016
With the rapid growing of crowdsourcing systems, quite a few applications based on a supervised learning paradigm can easily obtain massive labeled data at a relatively low cost. However, due to the variable uncertainty of crowdsourced labelers, learning procedures face great challenges. Thus, improving the qualities of labels and learning models plays a key role in learning from the crowdsourced labeled data. In this survey, we first introduce the basic concepts of the qualities of labels and learning models. Then, by reviewing recently proposed models and algorithms on ground truth inference and learning models, we analyze connections and distinctions among these techniques as well as clarify the level of the progress of related researches. In order to facilitate the studies in this field, we also introduce open accessible real-world data sets collected from crowdsourcing systems and open source libraries and tools. Finally, some potential issues for future studies are discussed.
Journal Article
Beyond the Edge: Markerless Pose Estimation of Speech Articulators from Ultrasound and Camera Images Using DeepLabCut
2022
Automatic feature extraction from images of speech articulators is currently achieved by detecting edges. Here, we investigate the use of pose estimation deep neural nets with transfer learning to perform markerless estimation of speech articulator keypoints using only a few hundred hand-labelled images as training input. Midsagittal ultrasound images of the tongue, jaw, and hyoid and camera images of the lips were hand-labelled with keypoints, trained using DeepLabCut and evaluated on unseen speakers and systems. Tongue surface contours interpolated from estimated and hand-labelled keypoints produced an average mean sum of distances (MSD) of 0.93, s.d. 0.46 mm, compared with 0.96, s.d. 0.39 mm, for two human labellers, and 2.3, s.d. 1.5 mm, for the best performing edge detection algorithm. A pilot set of simultaneous electromagnetic articulography (EMA) and ultrasound recordings demonstrated partial correlation among three physical sensor positions and the corresponding estimated keypoints and requires further investigation. The accuracy of the estimating lip aperture from a camera video was high, with a mean MSD of 0.70, s.d. 0.56 mm compared with 0.57, s.d. 0.48 mm for two human labellers. DeepLabCut was found to be a fast, accurate and fully automatic method of providing unique kinematic data for tongue, hyoid, jaw, and lips.
Journal Article
Chained Deep Learning Using Generalized Cross-Entropy for Multiple Annotators Classification
by
Álvarez-Meza, Andrés Marino
,
Gil-González, Julian
,
Fernandez-Gallego, Jose A.
in
Algorithms
,
chained approach
,
Classification
2023
Supervised learning requires the accurate labeling of instances, usually provided by an expert. Crowdsourcing platforms offer a practical and cost-effective alternative for large datasets when individual annotation is impractical. In addition, these platforms gather labels from multiple labelers. Still, traditional multiple-annotator methods must account for the varying levels of expertise and the noise introduced by unreliable outputs, resulting in decreased performance. In addition, they assume a homogeneous behavior of the labelers across the input feature space, and independence constraints are imposed on outputs. We propose a Generalized Cross-Entropy-based framework using Chained Deep Learning (GCECDL) to code each annotator’s non-stationary patterns regarding the input space while preserving the inter-dependencies among experts through a chained deep learning approach. Experimental results devoted to multiple-annotator classification tasks on several well-known datasets demonstrate that our GCECDL can achieve robust predictive properties, outperforming state-of-the-art algorithms by combining the power of deep learning with a noise-robust loss function to deal with noisy labels. Moreover, network self-regularization is achieved by estimating each labeler’s reliability within the chained approach. Lastly, visual inspection and relevance analysis experiments are conducted to reveal the non-stationary coding of our method. In a nutshell, GCEDL weights reliable labelers as a function of each input sample and achieves suitable discrimination performance with preserved interpretability regarding each annotator’s trustworthiness estimation.
Journal Article
AviTrap: A novel solution to achieve complete biotinylation
2024
Site specific biotinylation of AviTagged recombinant proteins using BirA enzyme is a widely used protein labeling technology. However, due to the incomplete biotinylation reactions and the lack of a purification method specific for the biotinylated proteins, it is challenging to purify the biotinylated sample when mixed with the non-biotinylated byproduct. Here, we have developed a monoclonal antibody that specifically recognizes the non-biotinylated AviTag but not the biotinylated sequence. After a ten-minute incubation with the resin that is conjugated with the antibody, the non-biotinylated AviTagged protein is trapped on the resin while the fully biotinylated material freely passes through. Therefore, our AviTrap (anti-AviTag antibody conjugated resin) provides an efficient solution for enriching biotinylated AviTagged proteins via a simple one-step purification.
Journal Article