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Lagoons and estuaries are transition spaces between earth and sea. Beyond their expanse, geographic repartition, geomorphological, hydroclimatic and ecobiological diversity and biodiversity, they play an important role in regional economies and are some of the ecosystems most vulnerable to global change. Reinforced by numerous references, this book studies Mediterranean lagoonal and estuarine fishes whose diversity largely depends on the composition of neighboring marine and continental ichtyofauna. The authors describe their morphological, biological, ecological and behavioral characteristics by evoking their distinctive features and differences with their marine or freshwater homologues. Their adaptation strategies, elucidated thanks to recent advances in morphology, genetics and molecular biology, are recognized as a major advantage in the context of climate change. This book is for natural environment managers, engineers, teachers, students and researchers.

In order to classify the trophic state of detritus sink systems, instead of the conventional indicators based on inorganic nutrient availability and algal biomass and productivity in the water column, we used new biochemical descriptors based on the amount of sedimentary organic carbon (C) and nitrogen (N) potentially available to heterotrophs. We investigated spatial and temporal changes in microphytobenthic biomass, organic matter biochemical composition, and enzymatically hydrolyzable protein and carbohydrate pools along a north-south transect in the Marsala lagoon (Mediterranean Sea, Italy) at three stations characterized by different hydrodynamic conditions and organic matter content in the sediment. In the Marsala lagoon water currents decreased from north to south and this pattern was reflected by organic matter distribution and composition. Sediment organic matter concentrations were among the highest reported in the literature and, in the central area where large meadows of the seagrass Posidonia oceanica were present, display a strong dominance of highly refractory carbohydrates. The protein to carbohydrate ratio was always < 1, indicating the dominance of aged organic detritus. Microphytobenthic biomass displayed an increasing pattern southward, and its contribution to the biopolymeric C pools ranged from negligible in the central sector of the lagoon to 50% in its northern part, indicating that sources of sediment organic C also changed along the hydrodynamic gradient. The percentage contribution of the enzymatically hydrolyzable fraction of proteins and carbohydrates was inversely related to total protein and total carbohydrate concentrations, respectively, suggesting that bioavailability of organic C and N increased with decreasing organic matter content in the sediment and with increasing hydrodynamic regime. Microphytobenthic contribution to biopolymeric C (as a proxy of autotrophic organic C) and the ratio of the enzymatically digestible fraction to biopolymeric C (as an indicator of organic matter liability) were significantly correlated, suggesting that chlorophyll a sediment content might be used as an indicator of food promptly available to consumers. The present study also highlighted that the ratio of labile (i. e., enzymatically digestible) versus biopolymeric organic C in the sediments tends to decrease with increasing organic matter content, due to the increase of the refractory fraction of organic C.

The ecological status classification of aquatic ecosystems using biological indices requires a number of steps, including the description and standardisation of the indices’ natural variability. Here, we address this point with reference to selected Mediterranean and Black Sea lagoons, using benthic macroinvertebrates in order to: (i) explore the drivers and extent of the indices’ natural variability; (ii) evaluate lagoon type-specific reference conditions and related classification boundaries; (iii) test the classification strength of the derived boundaries; and, (iv) propose recommendations for optimising ecological status classification. The considered indices showed large variation between and within the reference lagoons on both spatial and temporal scales. Among the tested descriptors of the proposed lagoon typologies, surface area, confinement and water salinity were found to be significant sources of index variability. Type-specific reference conditions and classification boundaries were then defined, improving the accuracy of ecological status assessment. At the lagoon level, classification strength increased up to 100 % in reference (least disturbed) lagoons and up to 83 % in an independent validation set of highly disturbed sites. Nevertheless, a certain degree of uncertainty was still found to affect classification at the study site level. Recommendations concerning the application of the various approaches to type-specific reference conditions and classification boundaries are given.

The composition of sediment organic matter and the related role of microphytobenthic biomass have been investigated during one-year in a semi-enclosed marine system (Marsala lagoon, Mediterranean Sea). Monthly samples from June 1993 to May 1994 were analysed for carbohydrate, protein, lipid, photosynthetic pigment and total organic matter. The three main biochemical classes of organic compounds (i.e. carbohydrates, proteins and lipids) showed higher concentrations than reported in the literature. However, photosynthetic pigment was quite low, compared to other enclosed marine basins or Mediterranean coastal lagoons. As a result, the contribution of primary organic carbon to the sedimentary biopolymeric fraction of organic matter was low (on average 2.2%), indicating that most of the sedimentary organic matter in the study area originated from sources other than micro-algae. The sedimentary organic matter, dominated by carbohydrates (on average 51.2%) followed by proteins (39.0%) and lipids (9.8%), as well as the low protein to carbohydrate ratio, indicate the presence of large amounts of non-living and/or aged organic matter. Comparing data on spatial distribution of sedimentary and suspended organic matter, the dynamic balance of resuspension vs. sedimentation along a north-south axis is invoked as one major factor affecting the distribution and composition of the main classes of organic compounds. The macroalgal and vascular plant coverage is suggested to be another major factor affecting both amounts and composition of sedimentary organic matter. The northern area, characterised by partially unvegetated sediments, showed higher amounts of proteins, whilst moving southward and approaching a luxuriant Posidonia oceanica reef, carbohydrates became more important relative to proteins. As only the biopolymeric fraction of sediment organic matter showed significant seasonal changes, the quantity of sediment OM behaves as an emerging property. By contrast, OM quality is strictly connected to algal coverage as well as to episodic inputs of primary organic matter from deposited phytoplankton and/or microphytobenthos. The uncoupling between large amounts and relatively low nutritional value of sedimentary OM suggests that this particular environment behaves as a detrital 'trap'.[PUBLICATION ABSTRACT]

The modern Nile delta developed in the Middle and Late Holocene, and at its most northern-central point is situated at the Burullus Lagoon, which is environmentally diverse, including salt marshes, mudflats, and sand plains, and separated from a sea by a sand barrier overtopped with high sand dunes. The lagoon has been fed since the Middle Holocene by the Sebennitic branch of the Nile and marine intrusions through the Bughaz inlet. A sediment core (BO-1) was collected at the northeastern shore of the lagoon and sampled at centennial scale resolution in order to reconstruct the development of the lagoon. The results show that an initial and limited lagoon had developed at the end of the Early Holocene, but after a dry period ca. 7.2 cal ka BP it has been progressively transformed into a marshy area, with occasional inflows of sea water. Lower water level and higher salinity of the Burullus Lagoon at 6.0–5.5 and 4.8–4.2 cal ka BP reflected droughts in the Nile catchment. Thereafter, the river reactivated in the Burullus Lagoon area, and since 2.8 cal ka BP was accompanied by occasional inflows of sea water. Since ca. 0.8 cal ka BP, increased fluvial activity occurred in this part of the Nile delta, which terminated after construction of the Aswan dams in the twentieth century.

During the last century, the Venice lagoon, Italy, has been experiencing a general degradation consisting of the deepening of tidal flats and the reduction of salt marsh areas. A conceptual model describing the long‐term evolution of such lagoons has recently been proposed. According to the model, the long‐term degradation consists of two steps: an initial salt marsh deterioration phase followed by a tidal flat erosion phase. In this work we test the long‐term evolution model through the analysis of four different bathymetries of the Venice lagoon during the last century (1901, 1932, 1970, and 2003). The result of the analysis confirms that the recent past morphological evolution of the Venice lagoon has actually followed the proposed model and highlights a slower erosive trend characterizing the northern part of the lagoon compared to the moderately rapid erosion affecting the central southern part. This result enables us to infer the likely future evolution of the Venice lagoon as long as the present forcing conditions are maintained.

This research explores the Messinian record in a western Mediterranean basin at the eastern end of the Betic Cordillera (the Garruchal section, southern sector of the Bajo Segura basin). Sedimentary facies development and foraminiferal assemblages were used as palaeoenvironmental proxies to characterize the palaeoceanographic evolution of the basin’s progressive restriction. Therefore, a succession of palaeoenvironmental phases can be established as follows. The “start phase” (until ~ 6.72 Ma) records the first ecological evidence of the restriction, evidenced by the sudden appearance of common benthic stress markers. The “amplification phase” of the restriction (up to ~ 6.35 Ma) marks a progressive increase in low bottom oxygen levels related to water-mass stratification in the evolution from upper epibathyal to outer shelf environments. The “consolidation phase” (until the intra-Messinian discontinuity ~ shortly after 6.03 Ma) records basin shallowing (from outer to inner shelf environments) in a context of a restricted basin. And lastly, the “climax phase” (until the end-Messinian discontinuity) records coastal sedimentation (marine coastal lagoon and sandy beaches). The findings of this research reveal that the Garruchal section is a good illustration of the sedimentary and palaeoenvironmental response of the peripheral basins to the progressive restriction of the Mediterranean before the Messinian Salinity Crisis. Finally, since it is widely accepted that the Mediterranean marine restriction has been developed in a stepwise mode, we here propose to establish the following terms for implementation at Mediterranean regional level: “start,” “amplification,” and “consolidation” phases, which finally led to the “climax” phase, that is, the Messinian Salinity Crisis stricto sensu.

   In this paper, we investigated seasonal variations in concentrations of microplastics (MPs) in surface sediments of a lagoon heavily impacted by human activities, located in northern Tunisia (the Bizerte lagoon, southern Mediterranean Sea). Analyses of 112 sediment samples collected from 28 stations between May 2019 and February 2020 revealed significant seasonal variation in concentrations of total MPs, with the highest levels recorded in August 2019 (109.6 ± 59.8 items kg −1 DS (dry sediment)) and the lowest in February 2020 (33.2 ± 22.0 items kg −1 DS). In terms of polymer types, polyethylene particles were the most abundant throughout the year, followed by polypropylene, polyvinyl chloride, and polyethylene terephthalate. Spatial variations in total MP concentrations were found to depend on several environmental factors, including proximity to the coastline, level of anthropogenic pressure, location inside the lagoon, and presence/absence of vegetation. The upper 5-cm surface sediment layer of the lagoon was found to contain ~ 9.96 × 10 10 MP particles, equal to ~ 248.97 t of plastic. Similar patterns of microplastic composition and structure were found throughout the year, revealing the same plastic pollution hotspots during all seasons. This indicates that sources of plastic pollution are land-based and originate from coastal urban, industrial, and agricultural areas, as well as from major freshwater streams. The findings of the present work can help to develop an efficient environmental management plan aiming to reduce and/or stop the spread of plastic pollution and its impacts on the socially and economically important ecosystem of the Bizerte lagoon.

Tidal measurements from the Italian city of Venice, available since 1872 and constituting the longest sea-level record in the Mediterranean area, indicate that local flooding statistics have dramatically worsened during the last decades. Individual flooding episodes are associated with adverse meteorological conditions, and their increased frequency is mainly attributed to the rise of the average local Relative Sea Level (RSL). However, the role of interannual-to-multidecadal modes of average RSL variability in shaping the evolution of Venice flooding is highly significant and can cause sharp increases in the flood frequency episodes. Here, we use local tidal measurements in Venice covering 1872–2020 to deeply inspect the contribution and predictability of the different components characterizing the observed average RSL variability, including a long-term trend and four quasi-periodic modes. Our results demonstrate that the observed increase in flooding frequency is not only due to the average RSL rise but also due to a progressive widening of tidal anomalies around the average RSL, revealed by opposite trends in mean tidal maxima and minima. Moreover, interannual and decadal periodicities are not negligible in modulating the timing of annual mean RSL and flood frequency extremes. This study demonstrates that the last decades experienced an unprecedented sharp increase in sea level, which significantly affected the decadal predictability of RSL with statistical methods. Our work contributes to a deeper understanding of the sources of uncertainty in decadal sea-level variability and predictability in the Venice lagoon.