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Recent advances in sequencing technologies now permit the analyses of plant DNA from fossil samples (ancient plant DNA, plant aDNA), and thus enable the molecular reconstruction of palaeofloras.Hitherto, ancient frozen soils have proved excellent in preservingDNAmolecules, and have thus been the most commonly used source of plant aDNA. However, DNA from soil mainly represents taxa growing a fewmetres fromthe sampling point. Lakes have larger catchment areas and recent studies have suggested that plant aDNAfromlake sediments is a more powerful tool for palaeofloristic reconstruction. Furthermore, lakes can be found globally in nearly all environments, and are therefore not limited to perennially frozen areas. Here,we review the latest approaches and methods for the study of plant aDNA from lake sediments and discuss the progressmade up to the present.Weargue that aDNAanalyses add newand additional perspectives for the study of ancient plant populations and, in time, will provide higher taxonomic resolution and more precise estimation of abundance. Despite this, key questions and challenges remain for such plant aDNA studies. Finally, we provide guidelines on technical issues, including lake selection, and we suggest directions for future research on plant aDNA studies in lake sediments.

Aim: We provide the first European-scale geospatial training set relating the charcoal signal in surface lake sediments to fire parameters (number, intensity and area) recorded by satellite moderate resolution imaging spectroradiometer (MODIS) sensors. Our calibration is intended for quantitative reconstructions of key fire-regime parameters by using sediment sequences of microscopic (MIC from pollen slides, particles 10–500 μm) and macroscopic charcoal (MAC from sieves, particles > 100 μm). Location: North–south and east–west transects across Europe, covering the mediterranean, temperate, alpine, boreal and steppe biomes. Time period: Lake sediments and MODIS active fire and burned area products were collected for the years 2012–2015. Methods: Cylinder sediment traps were installed in lakes to annually collect charcoal particles in sediments. We quantitatively assessed the relationships between MIC and MAC influx (particles/cm2/year) and the MODIS-derived products to identify source areas of charcoal and the extent to which lake-sediment charcoal is linked to fire parameters across the continent. Results: Source area of sedimentary charcoal was estimated to a 40-km radius around sites for both MIC and MAC particles. Fires occurred in grasslands and in forests, with grass morphotypes of MAC accurately reflecting the burned fuel-type. Despite the lack of local fires around the sites, MAC influx levels reached those reported for local fires. Both MIC and MAC showed strong and highly significant relationships with the MODIS-derived fire parameters, as well as with climatic variation along a latitudinal temperature gradient. Main conclusions: MIC and MAC are suited to quantitatively reconstructing fire number and fire intensity on a regional scale. However, burned area may only be estimated using MAC. Local fires may be identified by using several lines of evidence, e.g. analysis of large particles (> 600 μm), magnetic susceptibility and sedimentological data. Our results offer new insights and applications to quantitatively reconstruct fires and to interpret available sedimentary charcoal records.

Indian monsoon circulation is the primary driver of the long‐range transboundary mercury (Hg) pollution from South Asia to the Himalayas and Tibet Plateau region, yet the northward extent of this transport remains unknown. In this study, a strong δ202Hg signature overlapping was found between Lake Gokyo and Indian anthropogenic sources, which is an indicative of the Hg source regions from South Asia. Most of the sediment samples were characterized with relatively large positive Δ199Hg values (mean = 0.07‰–0.44‰) and small positive Δ200Hg values (mean = 0.03‰–0.08‰). Notably, the Δ199Hg values in the lake sediments progressively increased from southwest to northeast. Moreover, the Δ199Hg values peaked at Lake Tanglha (mean = 0.44‰ ± 0.04‰) before decreased at Lake Qinghai that is under the influence of the westerlies. Our results suggest that transboundary atmospheric transport could transport Hg from South Asia northwards to at least the Tanglha Mountains in the northern Himalaya‐Tibet. Plain Language Summary The fragile ecosystems of the Himalayas and Tibet Plateau region have been suffering transboundary Hg pollution from South Asia. However, the northward extent of this transport of atmospheric Hg pollution remains poorly understood. In our study, sediment core Hg isotope compositions from four lakes (Gokyo, Namco, and Tanglha in the south of the Tanglha Mountains and Qinghai in the north) along a southwest‐northeast transect in the region were combined to constrain the northward extent of transboundary Hg pollution by examining both mass‐dependent and mass‐independent fractionations. Our results suggest that transboundary atmospheric transport could transport Hg from South Asia northwards to at least the Tanglha Mountains in the northern Himalaya‐Tibet. Key Points The δ202Hg signatures among the three lakes in the north are indistinguishable without spatial distribution differences Most of sediment samples were characterized by positive Δ199Hg and Δ200Hg values The northward extent of atmospheric mercury transboundary transport could be anchored by progressive shifts of Δ199Hg signatures

This study presents the distribution of persistent organic pollutants (POPs), polycyclic aromatic hydrocarbons (PAHs) and heavy metals (HMs) in the sediments from four dams and two ponds in the Çanakkale city, Türkiye. The total concentration varied from 41.47 to 145.45 ng/g d.w. for PAHs; 1.40–14.96 ng/g d.w. for organochlorine pesticides (OCPs) and 0.13–3.31 ng/g d.w. for polychlorinated biphenyls (PCBs). The total polychlorinated dibenzo-p-dioxins/furans (∑PCDD/Fs) concentrations varied between 7.35 and 63.46 pg/g d.w. The HM distribution in sediments ranged from 9.41 to 21.13 mg/kg d.w. for As; 0.20–0.39 mg/kg d.w. for Cd; 19.4–281.68 mg/kg d.w. for Cr; 23.50–118.25 mg/kg d.w. for Pb and 118.9–374.82 mg/kg d.w. for Zn. This paper also elucidates possible sources of POP and HMs in sediment by using diagnostic ratios. The calculated ratios were shown that anthropogenic input is the source of these pollutants in sediments. Principal component analysis showed that the low molecular weight of POPs is considerably related and correlated, while high molecular weight pollutants have made another group and highly correlated with each other. The results indicated that anthropogenic pollution is mainly related to atmospheric input. Anthropogenic pollutants are more apparent at Atikhisar and Bakacak dams close to urbanized locations. Rather than the anthropogenic impact, based on the measured data interpretation, the global climate change effect was seen in Bakacak dam. The overall concentration of all pollutants revealed that Atikhisar and Bakacak sediments are high-level polluted areas according to several types of sediment guidelines.

This study investigated contamination by cadmium (Cd), zinc (Zn), copper (Cu), lead (Pb), arsenic (As), mercury (Hg), nickel (Ni), and chromium (Cr) in 58 and 105 sediment samples from rivers and lakes, respectively, in the Andong Lake region. River sediments showed metal hotspots, with Cd, Zn, Pb, Cu, and Hg concentrated near the smelter, Ni upstream, and As in some tributaries. In contrast, lake sediments showed higher metal levels in the main channel. A positive matrix factorization (PMF) model identified two primary contamination sources: smelting-derived materials (SDMs) and mine tailings-contaminated sediments (TCSs). PMF factor 1 was linked to Cd (84.6%) and Zn (70.3%) near the smelter, and was ascribed to SDMs, while factor 2, associated with Cr (89.7%), Ni (85.4%), and As (79.6%), was ascribed to TCSs. An empirical model based on the Cd/Pb and Zn/Pb concentration ratios of unaffected sediments effectively discriminated SDM and TCS sources; the results were consistent with those of the PMF model. SDMs contributed 87.6–92.6% of Cd and 72.9–78.9% of Zn in river sediments and 57.7–77.0% of Cd and 32.1–38.1% of Zn in lake sediments. These findings highlight the major role of smelting activities in contaminating sediments, particularly Cd, in the Andong Lake region.

Archaeal communities and the factors regulating their diversity in high altitude lakes are poorly understood. Here, we provide the first high-throughput sequencing study of Archaea from Tibetan Plateau lake sediments. We analyzed twenty lake sediments from the world's highest and largest plateau and found diverse archaeal assemblages that clustered into groups dominated by methanogenic Euryarchaeota, Crenarchaeota and Halobacteria/mixed euryarchaeal phylotypes. Statistical analysis inferred that salinity was the major driver of community composition, and that archaeal diversity increased with salinity. Sediments with the highest salinities were mostly dominated by Halobacteria. Crenarchaeota dominated at intermediate salinities, and methanogens were present in all lake sediments, albeit most abundant at low salinities. The distribution patterns of the three functional types of methanogens (hydrogenotrophic, acetotrophic and methylotrophic) were also related to changes in salinity. Our results show that salinity is a key factor controlling archaeal community diversity and composition in lake sediments on a spatial scale that spans nearly 2000 km on the Tibetan Plateau. We represent a comprehensive investigation of archaeal diversity in the pristine lake sediments across the Tibetan Plateau, and found salinity is the key factor controlling archaeal community diversity and composition. Graphical Abstract Figure. We represent a comprehensive investigation of archaeal diversity in the pristine lake sediments across the Tibetan Plateau, and found salinity is the key factor controlling archaeal community diversity and composition.

Agricultural pesticide use has increased worldwide during the last several decades, but the long-term fate, storage, and transfer dynamics of pesticides in a changing environment are poorly understood. Many pesticides have been progressively banned, but in numerous cases, these molecules are stable and may persist in soils, sediments, and ice. Many studies have addressed the question of their possible remobilization as a result of global change. In this article, we present a retro-observation approach based on lake sediment records to monitor micropollutants and to evaluate the long-term succession and diffuse transfer of herbicides, fungicides, and insecticide treatments in a vineyard catchment in France. The sediment allows for a reliable reconstruction of past pesticide use through time, validated by the historical introduction, use, and banning of these organic and inorganic pesticides in local vineyards. Our results also revealed how changes in these practices affect storage conditions and, consequently, the pesticides' transfer dynamics. For example, the use of postemergence herbicides (glyphosate), which induce an increase in soil erosion, led to a release of a banned remnant pesticide (dichlorodiphenyltrichloroethane, DDT), which had been previously stored in vineyard soil, back into the environment. Management strategies of ecotoxicological risk would be well served by recognition of the diversity of compounds stored in various environmental sinks, such as agriculture soil, and their capability to become sources when environmental conditions change.

Heavy metal contamination in lake sediments is a serious problem, particularly in developing countries such as China. To evaluate heavy metal pollution and risk of contamination in lake sediments on a national scale in China, we collated available data in the literature of the last 10 years on lake sediments polluted with heavy metals from 24 provinces in China. Based on these data, we used sediment quality guidelines, geoaccumulation index, and potential ecological risk index to assess potential ecological risk levels. The results showed that approximately 20.6% of the lakes studied exceeded grade II level in Chinese soil quality standards for As, 31.3% for Cd, 4.6% for Cu, 20.8% for Ni, 2.8% for Zn, and 11.1% for Hg, respectively. Besides, the mean concentrations for As in 10.3% of lakes, Hg in 11.9% of lakes, and Ni in 31.3% of lakes surpassed the probable effect level. The potential ecological risk for toxic metals decreased in the order of Cd > Hg > As > Cu > Pb > Ni > Cr > Zn, and there were 21.8% of the lakes studied in the state of moderate risk, 10.9% in high risk, and 12.7% in very high risk. It can be concluded that Chinese lake sediments are polluted by heavy metals to varying degrees. In order to provide key management targets for relevant administrative agencies, based on the results of the pollution and ecological risk assessments, Cd, Hg, As, Cu, and Ni were selected as the priority control heavy metals, and the eastern coastal provinces and Hunan province were selected as the priority control provinces. This article, therefore, provides a comprehensive assessment of heavy metal pollution in lake sediments in China, while providing a reference for the development of lake sediment quality standards. Chinese lake sediments are polluted by heavy metals to varying degrees. In order to provide key management targets for relevant administrative agencies, based on the results of the pollution and ecological risk assessments, Cd, Hg, As, Cu, and Ni were selected as the priority control heavy metals; and the eastern coastal provinces and Hunan province were selected as the priority control provinces.

The X-ray fluorescence (XRF) core-scanned Rb/Sr ratios of lake sediments have been widely used as a proxy for chemical weathering intensity and past climate change. However, some factors could affect Rb/Sr ratios, causing misinterpretation and limiting its application. In this study, we present a high-resolution XRF core-scanned Rb/Sr record of core ZB13-C1 from the Zoige Basin in the eastern Tibetan Plateau. To validate its application, we correlated this record with the chemical index of alteration (CIA) and other paleoclimatic proxies. Our results showed that (1) the core-scanned Rb/Sr ratios and CIA were reliable proxies of chemical weathering intensity in fine-grained sedimentary sequences; (2) the low values of core-scanned Rb/Sr ratios and CIA were significantly correlated with high total organic carbon content, arboreal pollen content, carbonate content, and C/N ratios, confirming its reliability as a proxy for the Asian summer monsoon intensity; (3) the core-scanned Rb/Sr ratios at core depths of 25–0.3 and 56–17 m were unable to reliably reflect chemical weathering intensity due to both the grain-size effect and the low test accuracy. Our study highlights the need for mutual verification of multiple indicators before accurately applying Rb/Sr as a paleoclimatic proxy in other similar study areas.

The rapid development of ancient DNA analysis in the last decades has induced a paradigm shift in ecology and evolution. Driven by a combination of breakthroughs in DNA isolation techniques, high-throughput sequencing, and bioinformatics, ancient genome-scale data for a rapidly growing variety of taxa are now available, allowing researchers to directly observe demographic and evolutionary processes over time. However, the vast majority of paleogenomic studies still focus on human or animal remains. In this article, we make the case for a vast untapped resource of ancient plant material that is ideally suited for paleogenomic analyses: plant remains, such as needles, leaves, wood, seeds, or fruits, that are deposited in natural archives, such as lake sediments, permafrost, or even ice caves. Such plant remains are commonly found in large numbers and in stratigraphic sequence through time and have so far been used primarily to reconstruct past local species presences and abundances. However, they are also unique repositories of genetic information with the potential to revolutionize the fields of ecology and evolution by directly studying microevolutionary processes over time. Here, we give an overview of the current state-of-the-art, address important challenges, and highlight new research avenues to inspire future research.