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"MRI images"
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Assessment of MRI image distortion based on 6 consecutive years of annual QAs and measurements on 14 MRI scanners used for radiation therapy
2023
Purpose To determine the magnitude of MRI image distortion based on 6 consecutive years of annual quality assurances/measurements on 14 MRI scanners used for radiation therapy and to provide evidence for the inclusion of additional margin for treatment planning. Methods and materials We used commercial MRI image phantoms to quantitatively study the MRI image distortion over period of 6 years for up to 14 1.5 and 3 T MRI scanners that could potentially be used to provide MRI images for treatment planning. With the phantom images collected from 2016 to 2022, we investigated the MRI image distortion, the dependence of distortion on the distance from the imaging isocenter, and the possible causes of large distortion discovered. Results MRI image distortion increases with the distance from the imaging isocenter. For a region of interest (ROI) with a radius of 100 mm centered at the isocenter, the mean magnitude of distortion for all MRI scanners is 0.44±0.18mm $0.44 \\pm 0.18\\;{\\rm{mm}}$ , and the maximum distortion varies from 0.52to1.31mm $0.52\\;{\\rm{to}}\\;1.31\\;{\\rm{mm}}$depending on MRI scanners. For an ROI with a radius of 200 mm centered at the isocenter, the mean magnitude of distortion increases to 0.84±0.45mm $0.84 \\pm 0.45\\;{\\rm{mm}}$ , and the range of the maximum distortion increases to 1.92−5.03mm $1.92 - 5.03\\;{\\rm{mm}}$depending on MRI scanners. The distortion could reach 2 mm at 150 mm from the isocenter. Conclusion An additional margin to accommodate image distortion should be considered for treatment planning. Imaging with proper patient alignment to the isocenter is vital to reducing image distortion. We recommend performing image distortion checks annually and after major upgrade on MRI scanners.
Journal Article
Tumor-Net: convolutional neural network modeling for classifying brain tumors from MRI images
by
Mahmud, Imran
,
Biplob, Khalid Been Badruzzaman
,
Bijoy, Md. Hasan Imam
in
brain tumor
,
mri images
,
resnet50
2023
Abnormal brain tissue or cell growth is known as a brain tumor. One of the body's most intricate organs is the brain, where billions of cells work together. As a head tumor grows, the brain suffers damage due to its increasingly dense core. Magnetic resonance imaging, or MRI, is a type of medical imaging that enables radiologists to view the inside of body structures without the need for surgery. The image-based medical diagnosis expert system is crucial for a brain tumor patient. In this study, we combined two Magnetic Resonance Imaging (MRI)-based image datasets from Figshare and Kaggle to identify brain tumor MRI using a variety of convolutional neural network designs. To achieve competitive performance, we employ several data preprocessing techniques, such as resizing and enhancing contrast. The image augmentation techniques (E.g., rotated, width shifted, height shifted, shear shifted, and horizontally flipped) are used to increase data size, and five pre-trained models employed, including VGG-16, VGG-19, ResNet-50, Xception, and Inception-V3. The model with the highest accuracy, ResNet-50, performs at 96.76 percent. The model with the highest precision overall is Inception V3, with a precision score of 98.83 percent. ResNet-50 performs at 96.96% for F1-Score. The prominent accuracy of the implemented model, i.e., ResNet-50, compared with several earlier studies to validate the consequence of this introspection. The outcome of this study can be used in the medical diagnosis of brain tumors with an MRI-based expert system.
Journal Article
Brain Tumor/Mass Classification Framework Using Magnetic-Resonance-Imaging-Based Isolated and Developed Transfer Deep-Learning Model
2022
With the advancement in technology, machine learning can be applied to diagnose the mass/tumor in the brain using magnetic resonance imaging (MRI). This work proposes a novel developed transfer deep-learning model for the early diagnosis of brain tumors into their subclasses, such as pituitary, meningioma, and glioma. First, various layers of isolated convolutional-neural-network (CNN) models are built from scratch to check their performances for brain MRI images. Then, the 22-layer, binary-classification (tumor or no tumor) isolated-CNN model is re-utilized to re-adjust the neurons’ weights for classifying brain MRI images into tumor subclasses using the transfer-learning concept. As a result, the developed transfer-learned model has a high accuracy of 95.75% for the MRI images of the same MRI machine. Furthermore, the developed transfer-learned model has also been tested using the brain MRI images of another machine to validate its adaptability, general capability, and reliability for real-time application in the future. The results showed that the proposed model has a high accuracy of 96.89% for an unseen brain MRI dataset. Thus, the proposed deep-learning framework can help doctors and radiologists diagnose brain tumors early.
Journal Article
BrainGAN: Brain MRI Image Generation and Classification Framework Using GAN Architectures and CNN Models
by
Ibrahim, Dina M.
,
Almansour, Atheer Fahad
,
Alrashedy, Halima Hamid N.
in
Accuracy
,
Algorithms
,
Alzheimer's disease
2022
Deep learning models have been used in several domains, however, adjusting is still required to be applied in sensitive areas such as medical imaging. As the use of technology in the medical domain is needed because of the time limit, the level of accuracy assures trustworthiness. Because of privacy concerns, machine learning applications in the medical field are unable to use medical data. For example, the lack of brain MRI images makes it difficult to classify brain tumors using image-based classification. The solution to this challenge was achieved through the application of Generative Adversarial Network (GAN)-based augmentation techniques. Deep Convolutional GAN (DCGAN) and Vanilla GAN are two examples of GAN architectures used for image generation. In this paper, a framework, denoted as BrainGAN, for generating and classifying brain MRI images using GAN architectures and deep learning models was proposed. Consequently, this study proposed an automatic way to check that generated images are satisfactory. It uses three models: CNN, MobileNetV2, and ResNet152V2. Training the deep transfer models with images made by Vanilla GAN and DCGAN, and then evaluating their performance on a test set composed of real brain MRI images. From the results of the experiment, it was found that the ResNet152V2 model outperformed the other two models. The ResNet152V2 achieved 99.09% accuracy, 99.12% precision, 99.08% recall, 99.51% area under the curve (AUC), and 0.196 loss based on the brain MRI images generated by DCGAN architecture.
Journal Article
A Hybrid Deep Learning Model for Brain Tumour Classification
2022
A brain tumour is one of the major reasons for death in humans, and it is the tenth most common type of tumour that affects people of all ages. However, if detected early, it is one of the most treatable types of tumours. Brain tumours are classified using biopsy, which is not usually performed before definitive brain surgery. An image classification technique for tumour diseases is important for accelerating the treatment process and avoiding surgery and errors from manual diagnosis by radiologists. The advancement of technology and machine learning (ML) can assist radiologists in tumour diagnostics using magnetic resonance imaging (MRI) images without invasive procedures. This work introduced a new hybrid CNN-based architecture to classify three brain tumour types through MRI images. The method suggested in this paper uses hybrid deep learning classification based on CNN with two methods. The first method combines a pre-trained Google-Net model of the CNN algorithm for feature extraction with SVM for pattern classification. The second method integrates a finely tuned Google-Net with a soft-max classifier. The proposed approach was evaluated using MRI brain images that contain a total of 1426 glioma images, 708 meningioma images, 930 pituitary tumour images, and 396 normal brain images. The reported results showed that an accuracy of 93.1% was achieved from the finely tuned Google-Net model. However, the synergy of Google-Net as a feature extractor with an SVM classifier improved recognition accuracy to 98.1%.
Journal Article
Brain tumor detection using CNN, AlexNet & GoogLeNet ensembling learning approaches
2023
The detection of neurological disorders and diseases is aided by automatically identifying brain tumors from brain magnetic resonance imaging (MRI) images. A brain tumor is a potentially fatal disease that affects humans. Convolutional neural networks (CNNs) are the most common and widely used deep learning techniques for brain tumor analysis and classification. In this study, we proposed a deep CNN model for automatically detecting brain tumor cells in MRI brain images. First, we preprocess the 2D brain image MRI image to generate convolutional features. The CNN network is trained on the training dataset using the GoogleNet and AlexNet architecture, and the data model's performance is evaluated on the test data set. The model's performance is measured in terms of accuracy, sensitivity, specificity, and AUC. The algorithm performance matrices of both AlexNet and GoogLeNet are compared, the accuracy of AlexNet is 98.95, GoogLeNet is 99.45 sensitivity of AlexNet is 98.4, and GoogLeNet is 99.75, so from these values, we can infer that the GooGleNet is highly accurate and parameters that GoogLeNet consumes is significantly less; that is, the depth of AlexNet is 8, and it takes 60 million parameters, and the image input size is 227 × 227. Because of its high specificity and speed, the proposed CNN model can be a competent alternative support tool for radiologists in clinical diagnosis.
Journal Article
Enhancing brain tumor detection in MRI images through explainable AI using Grad-CAM with Resnet 50
2024
This study addresses the critical challenge of detecting brain tumors using MRI images, a pivotal task in medical diagnostics that demands high accuracy and interpretability. While deep learning has shown remarkable success in medical image analysis, there remains a substantial need for models that are not only accurate but also interpretable to healthcare professionals. The existing methodologies, predominantly deep learning-based, often act as black boxes, providing little insight into their decision-making process. This research introduces an integrated approach using ResNet50, a deep learning model, combined with Gradient-weighted Class Activation Mapping (Grad-CAM) to offer a transparent and explainable framework for brain tumor detection. We employed a dataset of MRI images, enhanced through data augmentation, to train and validate our model. The results demonstrate a significant improvement in model performance, with a testing accuracy of 98.52% and precision-recall metrics exceeding 98%, showcasing the model’s effectiveness in distinguishing tumor presence. The application of Grad-CAM provides insightful visual explanations, illustrating the model’s focus areas in making predictions. This fusion of high accuracy and explainability holds profound implications for medical diagnostics, offering a pathway towards more reliable and interpretable brain tumor detection tools.
Journal Article
Multiple Brain Tumor Classification with Dense CNN Architecture Using Brain MRI Images
by
Khan, Jawad
,
Gürüler, Hüseyin
,
Özkaraca, Osman
in
Accuracy
,
Algorithms
,
Artificial neural networks
2023
Brain MR images are the most suitable method for detecting chronic nerve diseases such as brain tumors, strokes, dementia, and multiple sclerosis. They are also used as the most sensitive method in evaluating diseases of the pituitary gland, brain vessels, eye, and inner ear organs. Many medical image analysis methods based on deep learning techniques have been proposed for health monitoring and diagnosis from brain MRI images. CNNs (Convolutional Neural Networks) are a sub-branch of deep learning and are often used to analyze visual information. Common uses include image and video recognition, suggestive systems, image classification, medical image analysis, and natural language processing. In this study, a new modular deep learning model was created to retain the existing advantages of known transfer learning methods (DenseNet, VGG16, and basic CNN architectures) in the classification process of MR images and eliminate their disadvantages. Open-source brain tumor images taken from the Kaggle database were used. For the training of the model, two types of splitting were utilized. First, 80% of the MRI image dataset was used in the training phase and 20% in the testing phase. Secondly, 10-fold cross-validation was used. When the proposed deep learning model and other known transfer learning methods were tested on the same MRI dataset, an improvement in classification performance was obtained, but an increase in processing time was observed.
Journal Article
Differential Deep Convolutional Neural Network Model for Brain Tumor Classification
by
Javaid, Imran
,
Xu, Guizhi
,
Abd El Kader, Isselmou
in
Accuracy
,
Artificial intelligence
,
Biopsy
2021
The classification of brain tumors is a difficult task in the field of medical image analysis. Improving algorithms and machine learning technology helps radiologists to easily diagnose the tumor without surgical intervention. In recent years, deep learning techniques have made excellent progress in the field of medical image processing and analysis. However, there are many difficulties in classifying brain tumors using magnetic resonance imaging; first, the difficulty of brain structure and the intertwining of tissues in it; and secondly, the difficulty of classifying brain tumors due to the high density nature of the brain. We propose a differential deep convolutional neural network model (differential deep-CNN) to classify different types of brain tumor, including abnormal and normal magnetic resonance (MR) images. Using differential operators in the differential deep-CNN architecture, we derived the additional differential feature maps in the original CNN feature maps. The derivation process led to an improvement in the performance of the proposed approach in accordance with the results of the evaluation parameters used. The advantage of the differential deep-CNN model is an analysis of a pixel directional pattern of images using contrast calculations and its high ability to classify a large database of images with high accuracy and without technical problems. Therefore, the proposed approach gives an excellent overall performance. To test and train the performance of this model, we used a dataset consisting of 25,000 brain magnetic resonance imaging (MRI) images, which includes abnormal and normal images. The experimental results showed that the proposed model achieved an accuracy of 99.25%. This study demonstrates that the proposed differential deep-CNN model can be used to facilitate the automatic classification of brain tumors.
Journal Article
Detection of Alzheimer's disease with segmentation approach using K-Means Clustering and Watershed Method of MRI image
2021
Alzheimer's disease is a common form of neurodegenerative disorders characterized by defective brain cells, such as neurofibrillary tangles and amyloid plaque that is progressive. One of the physical characteristics of someone suffering from Alzheimer's disease is shrinking of the hippocampus area of the brain. The hippocampus is the smallest part of the brain that serves to save memory. The detection of Alzheimer's disease can be done using a Magnetic Resonance Image (MRI) which is a technique of noninovasive for an analysis of the structure of the brain in the Alzheimer's patient. In this research, K-Means Clustering and Watershed method are used to segment the hippocampus area which is one part of the brain that was attacked by Alzheimer's disease. The analysis used to detect Alzheimer's is comparing the value of the threshold with the number of white pixels in the images. The data used in this research are Open Access Series of Image Studies (OASIS) database by using the image of coronal slices. Based on the our experiment result, both K-Means Clustering and Watershed method can segment the hippocampus area to detect Alzheimer's disease.
Journal Article