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In Rosaceae, the replacement of the traditional four-subfamily division (Amygdaloideae or Prunoideae, Maloideae, Rosoideae, and Spiraeoideae) by the three-subfamily division (Dryadoideae, Rosoideae, and Amygdaloideae), the circumscription, systematic position, and phylogeny of genera in Maleae need to be reconsidered. The study aimed to circumscribe Maleae, pinpoint its systematic position, and evaluate the status of all generally accepted genera in the tribe using complete chloroplast genome data. Results indicated that Maleae consisted of pome-bearing genera that belonged to Maloideae as well as four genera ( Gillenia , Kageneckia , Lindleya , and Vauquelinia ) that were formerly considered to be outside Maloideae. The tribe could be subdivided into four subtribes: Gilleniinae ( Gillenia ), Lindleyinae ( Kageneckia and Lindleya ), Vaugueliniinae ( Vauquelinia ), and Malinae (all other genera; the core Maleae). Among the 36 recognized genera, Aria , Docyniopsis , Chamaemespilus , and Mespilus were not considered distinct and more research is needed to determine the taxonomic status of Rhaphiolepis from Eriobotrya . Within the core Maleae, five groups were revealed, whereas Sorbus L. was split as its members belonged to different groups.

Fleshy fruits are classified as ethylene-dependent or ethylene-independent according to the ethylene climacteric at the onset of ripening. However, the mechanism forming these two types of fruits is unclear. Pears ( Pyrus spp.) contain the both types, thus can serve as a model system to answer this question. Here, we assemble haplotype-resolved and chromosome-level genomes for ethylene-dependent and ethylene-independent accessions, and re-sequence 118 pear accessions. Two long noncoding RNAs named Ethylene Inhibiting Factor 1 ( EIF1 ) and EIF2 are identified, which suppress the transcription of ethylene biosynthesis gene ACS1 and ethylene biosynthesis, generating ethylene-independent fruit. Comparative genomic analyses reveal that allele-specific structural variations result in the loss of EIF1 and/or EIF2 , removing the suppression on ACS1 transcription and generating ethylene-dependent fruit. Further study reveals that, in most common fleshy fruits of Maloideae, EIF homologue exits in ethylene-independent pear and loquat and is transcribed; while in ethylene-dependent apple and hawthorn, EIF homologue does not exist in their genomes. Based on the ethylene climacteric at the onset of ripening, fleshy fruits can be classified as ethylene-dependent and ethylene-independent. Here, the authors assemble the genomes of both types of pears and reveal genetic basis for their formation.

Main conclusionSelf-incompatibility studies have revealed a potential use of Tunisian apple resources for crop improvement and modern breeding programs and a likely correlation between the pollen tube growth and flowering period.AbstractssApples [Malus domestica. Borkh] exhibit an S-RNase-based gametophytic self-incompatibility (GSI) system. Four primer combinations were used to S-genotype eighteen Tunisian local apple accessions and twelve introduced accessions that served as references. Within the Tunisian local accessions, S2, S3, S7, and S28 S-alleles were the most frequent and were assigned to 14 S-genotypes; among them, S7S28, S3S7, S2S5, and S2S3 were the most abundant. PCA plot showed that population structuring was affected by the S-alleles frequencies and revealed a modern origin of the Tunisian varieties rather than being ancient ones. Nonetheless, the results obtained with 17 SSR markers showed a separate grouping of local Tunisian accessions that calls into question the hypothesis discussed. Pollination experiments showed that the pollen started to germinate within 24 h of pollination but 48 h after pollination in the “El Fessi” accession. The first pollen tubes arrived in the styles within 36 h of pollination in two early flowering accessions known as “Arbi” and “Bokri”, and after 72 h of pollination in late flowering “El Fessi” and 48 h after pollination in remaining accessions. The first pollen tube arrests were observed in accessions “Arbi” and “Bokri” within 84 h of pollination, within 108 h of pollination in “El Fessi” and within 108 h of pollination in remaining accessions. In the apple accession called “Boutabgaya,” the pollen tubes reached the base of the style within 120 h of pollination without being aborted. Nevertheless, the self-compatible nature of “Boutabgaya” needs more studies to be confirmed. However, our results revealed the malfunction of the female component of the GSI in this accession. To conclude, this work paved the path for further studies to enhance the insight (i) into the relation between the flowering period and the pollen tube growth, (ii) self-compatible nature of “Boutabgaya”, and (iii) the origin of the Tunisian apple.

Metabolic disorder, and obesity in particular, is a global epidemic among the world's population and is a complex multifactorial health problem. Obesity is associated with serious health risks like diabetes, coronary heart disease, non‐alcoholic fatty liver disease, hyperlipidemia, and hyperglycemia disorders and has shown a steady increase in morbimortality indicators. Many drugs have been approved for effective treatment of metabolic disorders and their symptoms, but the cost on the health system and on the individual patient is extremely high. Therefore, an adjunctive treatment for managing obesity and metabolic disorder could be in the use of medicinal plants and functional foods, which could reduce the cost as well as reduce the side effects of these medications. Traditional herbal medicines and functional foods have become the subject of global importance, with both medical and economic implications. The apple subfamily Maloideae includes commercially and medicinally valuable fruits like apples, pears, loquat, quince, and hawthorn, and many other plants. This subfamily has a distinctive fruit, the pome, with characteristic antioxidant content. This review summarizes the recently published research, preclinical data, brief phytochemistry, and pharmacology on 5 Maloideae genera to underscore their potential as adjunctive therapy against obesity and metabolic disorder and future research opportunities. The apple subfamily Maloideae includes commercially and medicinally valuable plants. The fruits and other plant parts contain antioxidant compounds, like polyphenols. When consumed, the fruit and other plant parts mostly reduce body weight in humans. Studies showed that fruits and other plant parts have an impact against obesity and metabolic disorder.

The genus Chaenomeles, part of the subfamily Maloideae within the Rosaceae family, comprises five recognized species and has long been valued for its ornamental qualities. However, the use of Chaenomeles japonica as a fruit crop is relatively recent, with its introduction into targeted breeding activities only occurring in the 1950s. Due to this, genetic information on the genus remains limited, and the application of molecular markers in crop breeding and further development have been narrow, relying primarily on non-specific marker applications in germplasm analysis. One potential solution is the transfer of molecular markers between genera, specifically from the related Maloideae genera. This study aimed to test the transferability of SSR markers developed for Malus to Chaenomeles, and to analyze the structure of available Chaenomeles germplasm. By including 74 Chaenomeles genotypes, 95 SSR markers originally developed for Malus were tested, with 25 proving effective for characterizing Chaenomeles germplasm. These adapted SSR markers successfully differentiated among Chaenomeles species, including Chaenomeles japonica, Chaenomeles speciosa, Chaenomeles cathayensis, and hybrids like Chaenomeles × superba and Chaenomeles × californica. The markers demonstrated high stability and repeatability, indicating their suitability for large-scale genetic research, species composition assessment, and breeding material evaluation. Given the limited studies on SSR markers in Chaenomeles, this research lays the foundation for further exploration, potentially expanding into the genetic diversity assessment and trait screening for breeding. As genetic research on Chaenomeles is still in its early stages, the development of additional markers will be crucial for advancing this crop.

Terpenes are organic compounds and play important roles in plant development and stress response. Terpene synthases (TPSs) are the key enzymes for the biosynthesis of terpenes. For Rosaceae species, terpene composition represents a critical quality attribute, but limited information is available regarding the evolution and expansion occurring in the terpene synthases gene family. Here, we selected eight Rosaceae species with sequenced and annotated genomes for the identification of TPSs, including three Prunoideae, three Maloideae, and two Rosoideae species. Our data showed that the TPS gene family in the Rosaceae species displayed a diversity of family numbers and functions among different subfamilies. Lineage and species-specific expansion of the TPSs accompanied by frequent domain loss was widely observed within different TPS clades, which might have contributed to speciation or environmental adaptation in Rosaceae. In contrast to Maloideae and Rosoideae species, Prunoideae species owned less TPSs, with the evolution of Prunoideae species, TPSs were expanded in modern peach. Both tandem and segmental duplication significantly contributed to TPSs expansion. Ka/Ks calculations revealed that TPSs genes mainly evolved under purifying selection except for several pairs, where the divergent time indicated TPS-e clade was diverged relatively anciently. Gene function classification of TPSs further demonstrated the function diversity among clades and species. Moreover, based on already published RNA-Seq data from NCBI, the expression of most TPSs in Malus domestica, Prunus persica, and Fragaria vesca displayed tissue specificity and distinct expression patterns either in tissues or expression abundance between species and TPS clades. Certain putative TPS-like proteins lacking both domains were detected to be highly expressed, indicating the underlying functional or regulatory potentials. The result provided insight into the TPS family evolution and genetic information that would help to improve Rosaceae species quality.

Background The vigour and precocity of trees highly influences their efficiency in commercial production. In apple, dwarfing rootstocks allow high-density plantings while their precocious flowering enables earlier fruit production. Currently, there is a lack of pear ( Pyrus communis L.) rootstocks that are equivalent to the high yielding apple rootstock ‘M9’. For the efficient breeding of new Pyrus rootstocks it is crucial to understand the genetic determinants of vigour control and precocity. In this study we used quantitative trait loci (QTLs) analysis to identify genetic loci associated with the desired traits, using a segregating population of 405 F1 P. communis seedlings from a cross between ‘Old Home’ and ‘Louise Bonne de Jersey’ (OHxLBJ). The seedlings were grafted as rootstocks with ‘Doyenne du Comice’ scions and comprehensively phenotyped over four growing seasons for traits related to tree architecture and flowering, in order to describe the growth of the scions. Results A high density single nucleotide polymorphism (SNP)-based genetic map comprising 597 polymorphic pear and 113 apple markers enabled the detection of QTLs influencing expression of scion vigour and precocity located on linkage groups (LG)5 and LG6 of ‘Old Home’. The LG5 QTL maps to a position that is syntenic to the apple ‘Malling 9’ (‘M9’) Dw1 locus at the upper end of LG5. An allele of a simple sequence repeat (SSR) associated with apple Dw1 segregated with dwarfing and precocity in pear and was identified in other pear germplasm accessions. The orthology of the vigour-controlling LG5 QTL between apple and pear raises the possibility that the dwarfing locus Dw1 arose before the divergence of apple and pear, and might therefore be present in other Rosaceae species. Conclusion We report the first QTLs associated with vigour control and flowering traits in pear rootstocks. Orthologous loci were found to control scion growth and precocity in apple and pear rootstocks. The application of our results may assist in the breeding process of a pear rootstock that confers both vigour control and precocity to the grafted scion cultivar.

To get a more comprehensive knowledge of oil contents and fatty acid pattern, seed oils from various Rosaceous plants belonging to the subfamilies Maloideae and Rosoideae, respectively, were investigated. For this purpose, isolated seeds of 18 dessert and cider apple ( Malus domestica BORKH.) cultivars of different provenances, pear ( Pyrus communis L.), rose hip ( Rosa canina L.), quince ( Cydonia oblonga Mill.), and red chokeberry ( Aronia arbutifolia L.) were analyzed for their oil content and fatty acid composition. Oil contents varied significantly, not only among the different genera, but also among cultivars of one species, ranging from 0.8 to 29.4 g/100 g dry matter. Qualitatively, the fatty acid profiles of the investigated seed oils showed good agreement in all representatives of the Rosaceae. Their triacylglycerols were uniformly composed of linoleic, oleic, palmitic, stearic, palmitoleic, α-linolenic, arachidic, gondoic, and behenic acids. Quantitation of individual fatty acids revealed the oils to be rich in mono- and diunsaturated oleic acid and linoleic acid, ranging from 15.1 to 33.3 g/100 g and from 32.5 to 49.7 g/100 g, respectively. As expected, contents of saturated fatty acids were 6–10 times lower. Moreover, apple cultivars showed pronounced differences in yields, numbers, and weights of their seeds. As demonstrated by the data obtained from this study, seeds resulting from the processing of apple, pear, quince, chokeberry (Maloideae), and rose hip (Rosoideae) into juices, jellies, and jams may serve as a promising source for the recovery of nutritionally valuable edible oils.

• Apomixis in Crataegus is primarily aposporous and requires pollination. The embryo sac is of the Polygonum type. A combination of meiotically unreduced embryo sacs with apparently reduced pollen would violate the usual requirement for a 2 : 1 ratio of maternal to paternal contributions to the endosperm. We therefore investigated the origin of endosperm in seeds of sexual diploids and apomictic polyploids of the sister genera Crataegus and Mespilus. • Flow-cytometric DNA measurements from embryo and endosperm in mature seeds were converted to ploidy levels using leaf-tissue information. • The diploids had triploid endosperm. In c. 60% of seed from polyploids, one sperm apparently contributes to the endosperm, while 25% or more may involve two sperm. Additional results suggest that trinucleate central cells also occur. Fertilization of meiotically unreduced eggs is indicated. • The ratio of maternal to paternal contributions to the endosperm in these apomictic Crataegus is not constrained to 2 : 1. They thus resemble some Sorbus (Pyreae) and very distantly related Ranunculus (Ranunculaceae). It is suggested that Paspalum (Poaceae) may have similarly flexible endosperm ploidy levels.

The relationship between polyploidy and breeding system is of critical importance for understanding evolution and improving the taxonomy of large Rosaceous genera. Reviewing the data available for the family and for tribe Pyreae (formerly subfamily Maloideae) in particular, it appears that hybridization, pseudogamous gametophytic apomixis, polyploidy, and self-compatibility are closely linked. Studies of the evolutionary significance of any one or two of these factors need to consider the others as well. Taxonomic decisions likewise need to be informed by knowledge of how these factors affect patterns of phenetic and genetic variation.