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Abstract With the unprecedented environmental changes caused by climate change including ocean acidification, it has become crucial to understand the responses and adaptive capacity of fish to better predict directional changes in the ecological landscape of the future. We conducted a systematic literature review to examine if simulated ocean acidification (sOA) could influence growth and reproduction in fish within the dynamic energy budget theory framework. As such, we chose to examine metabolic rate, locomotion, food assimilation and growth in early life stages (i.e. larvae and juvenile) and adults. Our goal was to evaluate if acclimatization to sOA has any directional changes in these traits and to explore potential implications for energetic trade-offs in these for growth and reproduction. We found that sOA had negligible effects on energetic expenditure for maintenance and aerobic metabolism due to the robust physiological capacity regulating acid–base and ion perturbations but substantive effects on locomotion, food assimilation and growth. We demonstrated evidence that sOA significantly reduced growth performance of fish in early life stages, which may have resulted from reduced food intake and digestion efficiency. Also, our results showed that sOA may enhance reproduction with increased numbers of offspring although this may come at the cost of altered reproductive behaviours or offspring fitness. While these results indicate evidence for changes in energy budgets because of physiological acclimatization to sOA, the heterogeneity of results in the literature suggests that physiological and neural mechanisms need to be clearly elucidated in future studies. Lastly, most studies on sOA have been conducted on early life stages, which necessitates that more studies should be conducted on adults to understand reproductive success and thus better predict cohort and population dynamics under ongoing climate change. Lay Summary Ocean acidification (OA) could alter energy budgets of marine fish. OA had negligible effects on aerobic metabolism, but substantive effects on locomotion, food assimilation and growth, suggesting a potential shift in energy budgets in the future. Also, OA may enhance reproduction potentially at the cost of altered reproductive behaviours or offspring fitness.

With about 8000 marine benthic species, the amphipod crustaceans form one of the richest animal groups of the worldwide Ocean. They have colonized a wide range of soft- and hard-bottom natural and artificial habitats extending from the intertidal to hadal zones. Moreover, they show a broad size spectrum, with numerous giant species exceeding 20 cm in length and some species smaller than 2 mm. When biofouling artificial hard surfaces, some tube-building species can form very dense populations comprising up to 100,000 individuals per square meter. Amphipods are important prey for fish and mammals. Along with cephalopod juveniles, they are also included in the trophic diet of shorebirds that consume amphipods mostly during the low tide on tidal flats. They display diel migration, which reinforces the predation by demersal fish in the suprabenthic zone just above the sea bed, as well as by pelagic fish in the water column. Despite their importance in terms of biodiversity and trophic transfer, no general overview is available on the role of benthic amphipods in marine ecosystem food webs. Various methods, including laboratory and field experiments, as well as the analysis of stomach contents and DNA extraction, have been used to identify the prey/predator trophic links. Based on an extensive literature review, this study discusses the role of marine benthic amphipods as potential food for higher trophic levels in natural and artificial hard-bottom communities created via the construction of offshore wind farms.

Background Biotelemetry has become a key tool for studying marine animals in the last decade, and a wide range of electronic tags are now available for answering a range of research questions. However, comparatively, less attention has been given to attachment methods for these tags and the implications of tag retention on study design, especially when designing a comparative study looking at multiple species. Here, we reported our findings on acoustic tag retention rates for juveniles of two species of marine turtle: the green sea turtle ( Chelonia mydas ) and the hawksbill sea turtle ( Eretmochelys imbricata ). We captured both species twice annually (spring and fall) from 2012 through 2017, as part of a capture–mark–recapture study at Buck Island Reef National Monument, St. Croix, U.S. Virgin Islands. We assessed tag retention rates using physical recaptures of turtles previously outfitted with an acoustic tag. Results We deployed 72 acoustic tags on 60 juvenile greens and 37 acoustic tags on 29 hawksbills. We estimated the half-life for tags on greens to be 150 days (95% CI 117–188 days), whereas the half-life for tags on hawksbills was 1077 days (95% CI 870–2118 days), a marked difference. We observed that tag attachment holes, drilled into the posterior marginal scutes, migrated laterally towards the outer edge of the marginals in both species. Green turtles tended to exhibit tear-outs, as their attachment holes wore and/or tags grew near the edge of their scutes, whereas hawksbills tended to maintain the structure of these holes and did not exhibit these tear-outs. Conclusions We conclude that hawksbills can be tagged with long-battery-life acoustic tags for long-term studies of habitat use and movement patterns, whereas greens are likely to shed their tags in the 1st year, making long-term studies difficult. This study is the first clear evidence that tagging protocols should vary between species of hard-shelled turtles. Furthermore, shed tags on the seafloor continue to be detected by acoustic receivers, creating a challenge in data filtering before analysis. We encourage future research into an efficient method for filtering these data points prior to analysis.

Background Animal biotelemetry and individual-based modeling (IBM) are natural complements, but there are few published examples where they are applied together to address fundamental or applied ecological questions. Existing studies are often found in the modeling literature and frequently re-use small datasets collected for purposes other than the model application. Animal biotelemetry can provide the robust measurements that capture relevant ecological patterns needed to parameterize, calibrate, and assess hypotheses in IBMs; together they could help meet demand for predictive modeling and decision-support in the face of environmental change. Results We used an simple exemplar IBM that uses spatio-temporal movement patterns of 103 acoustic-tagged juvenile yearling Chinook salmon ( Oncorhynchus tshawytscha ), termed ‘smolts’, to quantitatively assess plausibility of two migratory strategies that smolts are hypothesized to use while migrating north through the plume of the Columbia River (United States of America). We find that model smolts that seek to maximize growth demonstrate movement patterns consistent with those of tagged smolts. Model smolts that seek to move quickly out of the plume region by seeking favorable currents do not reproduce the same patterns. Conclusions Animal biotelemetry and individual-based modeling are maturing fields of inquiry. Our hope is that this model description and the basic analytical techniques will effectively illustrate individual-based models for the biotelemetry community, and perhaps inspire new collaborations between biotelemetry researchers and individual-based modelers.