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26 result(s) for "Mean squared displacement"
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RANDOMIZED HAMILTONIAN MONTE CARLO
Tuning the durations of the Hamiltonian flow in Hamiltonian Monte Carlo (also called Hybrid Monte Carlo) (HMC) involves a tradeoff between computational cost and sampling quality, which is typically challenging to resolve in a satisfactory way. In this article, we present and analyze a randomized HMC method (RHMC), in which these durations are i.i.d. exponential random variables whose mean is a free parameter. We focus on the small time step size limit, where the algorithm is rejection-free and the computational cost is proportional to the mean duration. In this limit, we prove that RHMC is geometrically ergodic under the same conditions that imply geometric ergodicity of the solution to underdamped Langevin equations. Moreover, in the context of a multidimensional Gaussian distribution, we prove that the sampling efficiency of RHMC, unlike that of constant duration HMC, behaves in a regular way. This regularity is also verified numerically in non-Gaussian target distributions. Finally, we suggest variants of RHMC for which the time step size is not required to be small.
Effects of environmental factors and landscape features on movement patterns of Florida black bears
A greater understanding of how environmental factors and anthropogenic landscape features influence animal movements can inform management and potentially aid in mitigating human-wildlife conflicts. We investigated the movement patterns of 16 Florida black bears (Ursus americanus floridanus; 6 females, 10 males) in northcentral Florida at multiple temporal scales using GPS data collected from 2011 to 2014. We calculated bi-hourly step-lengths and directional persistence, as well as daily and weekly observed displacements and expected displacements. We used those movement metrics as response variables in linear mixed models and tested for effects of sex, season, and landscape features. We found that step-lengths of males were generally longer than step-lengths of females, and both sexes had the shortest step-lengths during the daytime. Bears moved more slowly (shorter step-lengths) and exhibited less directed movement when near creeks, in forested wetlands, and in marsh habitats, possibly indicating foraging behavior. In urban areas, bears moved more quickly (longer steplengths) and along more directed paths. The results were similar across all temporal scales. Major roads tended to act as a semipermeable barrier to bear movement. Males crossed major roads more frequently than females but both sexes crossed major roads much less frequently than minor roads. Our findings regarding the influence of landscape and habitat features on movement patterns of Florida black bears could be useful for planning effective wildlife corridors and understanding how future residential or commercial development and road expansions may affect animal movement.
Effect of random walk methods on searching efficiency in swarm robots for area exploration
The objective of area exploration is to traverse the area effectively and random walk methods are the most commonly used searching strategy for swarm robots. Existing research mainly compares the effectiveness of various random walk methods through experimental verification, which has relatively large limitations. In order to make the application of the random walk methods more convenient, this paper quantitatively analyzes the searching efficiency (SE) of random walk methods. Firstly, the formula of the mean square displacement (MSD) of the robot position is given, and it is shown that the mean and the variance of the random step length are the factors that affect the SE. In addition, in order to produce the suitable step length, a truncated random walk method is constructed to make the generated step lengths follow a given distribution and the step lengths are within a specified range, thereby improving the SE. Thirdly, the correlations between the step length threshold (SLT), the area of the region, and the number of robots are provided based on MSD and truncated random walk method. When the area of region and the number of robots are fixed, there exists a SLT. When the expectation of the step length is greater than SLT, the swarm robots can achieve the highest SE. The area exploration task of swarm robots are carried out in simulation experiments and the coverage ratio is used to evaluate the SE of each random walk method. The experimental results show that when the area and the number of robots are given, there exist an optimal step length, which can enable the robots to achieve the optimal search.
Spurious ergodicity breaking in normal and fractional Ornstein-Uhlenbeck process
The Ornstein-Uhlenbeck process is a stationary and ergodic Gaussian process, that is fully determined by its covariance function and mean. We show here that the generic definitions of the ensemble- and time-averaged mean squared displacements fail to capture these properties consistently, leading to a spurious ergodicity breaking. We propose to remedy this failure by redefining the mean squared displacements such that they reflect unambiguously the statistical properties of any stochastic process. In particular we study the effect of the initial condition in the Ornstein-Uhlenbeck process and its fractional extension. For the fractional Ornstein-Uhlenbeck process representing typical experimental situations in crowded environments such as living biological cells, we show that the stationarity of the process delicately depends on the initial condition.
Beyond the next step: A multi‐criteria generative validation framework for step selection functions
Step‐selection functions (SSFs), typically fitted using step‐selection analysis (SSA) or integrated step‐selection analysis (iSSA) are widely used to infer habitat selection and movement kernels from high‐frequency telemetry data, but most standard validation tools focus on one‐step‐ahead prediction and do not guarantee that fitted models generate realistic trajectories or emergent space‐use patterns. We propose a multi‐criteria generative validation framework for SSF‐based movement models (typically fitted via SSA/iSSA), built around four pillars that target emergent utilization distributions, mean squared displacement, path sinuosity and barrier crossing. For each pillar, we define an ecologically interpretable trajectory‐level summary (Wasserstein distance between utilization distributions, mean squared displacement, straightness index and barrier‐crossing counts) and embed it in a Monte Carlo rank‐testing scheme that propagates parameter uncertainty. Applied to six synthetic ‘stress tests’ (sedentary home range, hard barrier, corridor follower, multi‐state movement, orbiter and return‐conditioned sinuosity), the framework reveals distinct failure modes that may not be detected by conventional stepwise validation. An empirical application to a GPS‐tracked red deer illustrates partial generative realism at a 6‐h sampling interval: the fitted iSSA reproduces long‐horizon space‐use and path sinuosity but shows a detectable mismatch in displacement dynamics (mean squared displacement). Résumé Les fonctions de sélection de pas (SSF), généralement estimées par analyse de sélection de pas (SSA) ou sa version analyse intégrée (iSSA), sont largement utilisées pour inférer la sélection d’habitat et les noyaux de mouvement à partir de données de télémétrie à haute fréquence. Cependant, les outils de validation standards se concentrent principalement sur la prédiction à un pas et ne garantissent pas que les modèles ajustés génèrent des trajectoires réalistes ou des patrons émergents d’utilisation de l’espace. Nous proposons un cadre de validation générative multi‐critères pour les modèles de mouvement basés sur les SSF (généralement estimés via SSA/iSSA), structuré autour de quatre piliers ciblant les distributions d’utilisation émergentes, le déplacement quadratique moyen, la sinuosité des trajectoires et le franchissement de barrières. Pour chaque pilier, nous définissons un résumé de trajectoire écologiquement interprétable (distance de Wasserstein entre distributions d’utilisation, déplacement quadratique moyen, indice de rectitude et nombre de franchissements de barrières), intégré dans un schéma de tests par rang de Monte Carlo qui propage l’incertitude des paramètres. Appliqué à six scénarios synthétiques de « tests de résistance » (domaine vital sédentaire, barrière imperméable, suivi de corridor, mouvement multi‐états, orbite et sinuosité conditionnée par retour), ce cadre met en évidence des modes d’échec distincts qui peuvent ne pas être détectés par les validations classiques pas à pas. Une application empirique à une trajectoire GPS de cerf élaphe met en évidence un réalisme génératif partiel à une résolution temporelle de 6 heures: le modèle iSSA ajusté reproduit l’utilisation de l’espace à long terme et la sinuosité des trajectoires, mais présente un écart détectable dans la dynamique de déplacement (déplacement quadratique moyen).
Molecular dynamics simulation of interface atomic diffusion in ultrasonic metal welding
The formation of a reliable joint between a large number of aluminum strands for battery applications is crucial in automotive industry, especially in the technology of autonomous vehicles. Therefore, in this study, mechanical deformations and diffusion patterns of the mating interface in ultrasonic welding of aluminum were investigated using molecular dynamics simulations. Furthermore, microscopic observations of the joints between aluminum strands from ultrasonic welding illustrating the influence of two process parameters were done. To study the nanomechanics of the joint formation, two aluminum crystallites of different orientations were built. The impact of the sliding velocity and the compression rate of the upper crystal block on the diffusion pattern at the interface of the two crystallites were quantified via the diffusion coefficient. Tensile deformations of several joint configurations were performed to investigate the load-bearing capacity of the solid state bond, taking into account the compression rate, the sliding velocity and the crystallite orientation. The atomic scale simulations revealed that the orientations of the crystallites govern the interface diffusion and the tensile strength of the joint significantly. Furthermore, interface atom diffusion increased with increasing the sliding velocity. Additionally, it was observed that a higher sliding velocity enhances the friction heat generation between the crystallites and significantly increases the interface temperature.
Leveraging large-deviation statistics to decipher the stochastic properties of measured trajectories
Extensive time-series encoding the position of particles such as viruses, vesicles, or individual proteins are routinely garnered in single-particle tracking experiments or supercomputing studies. They contain vital clues on how viruses spread or drugs may be delivered in biological cells. Similar time-series are being recorded of stock values in financial markets and of climate data. Such time-series are most typically evaluated in terms of time-averaged mean-squared displacements (TAMSDs), which remain random variables for finite measurement times. Their statistical properties are different for different physical stochastic processes, thus allowing us to extract valuable information on the stochastic process itself. To exploit the full potential of the statistical information encoded in measured time-series we here propose an easy-to-implement and computationally inexpensive new methodology, based on deviations of the TAMSD from its ensemble average counterpart. Specifically, we use the upper bound of these deviations for Brownian motion (BM) to check the applicability of this approach to simulated and real data sets. By comparing the probability of deviations for different data sets, we demonstrate how the theoretical bound for BM reveals additional information about observed stochastic processes. We apply the large-deviation method to data sets of tracer beads tracked in aqueous solution, tracer beads measured in mucin hydrogels, and of geographic surface temperature anomalies. Our analysis shows how the large-deviation properties can be efficiently used as a simple yet effective routine test to reject the BM hypothesis and unveil relevant information on statistical properties such as ergodicity breaking and short-time correlations.
Probe microrheology without particle tracking by differential dynamic microscopy
We present a new method for performing passive probe microrheology. Using a simple theoretical framework, we show how probes’ mean-squared displacements can be extracted by analyzing intensity fluctuations in optical microscopy videos via differential dynamic microscopy (DDM). Applying the method to optically dilute probes in Newtonian and viscoelastic fluids quantitatively reproduces mean-squared displacements extracted from multiple particle tracking (MPT), and exposes the relative strengths and weakness of DDM. Furthermore, DDM can be used to measure the mean-squared displcement in optically dense fluids where MPT fails, demonstrating that DDM can extend the range of microrheology experiments while circumventing many of the drawbacks of MPT.
Some Thermomechanical Properties of an FCC Helium Cryocrystal
The paper presents analytic expressions of the Helmholtz free energy, the crystal parameters, the nearest neighbor distance between two atoms, the isothermal compressibility, the thermal expansion coefficient, the heat capacity at constant volume, the Gruneisen parameter, the isothermal elastic modulus, the Young modulus, the mean squared displacement and the Debye–Waller factor for FCC monoatomic crystal builded by the statistical moment method. The paper performs numerical calculation of the obtained theoretical results for FCC quantum crystals 3 He and 4 He using the Lennard–Jones (6–12) pair interaction potential and the coordination sphere method. Some calculated results are compared with the experimental data and other calculations.
Modeling Diffusion of Elongated Particles Through a Narrowing Channel
Simulations of the Brownian dynamics of diffusing particles in complex environments provide important information about the characteristics of the medium and the properties of biological processes. Notable examples include the diffusion of ions and macromolecular solutes through channels of varying cross-section, such as pores in biological membranes, living tissues, zeolites, carbon nanotubes, and synthetic porous materials. In these systems, the observed diffusion can exhibit anomalous behavior characterized by a nonlinear increase in the mean squared displacement. In this article, we present a toy model of the diffusion of rod-shaped particles through a narrowing, conical pore with a trapezoidal longitudinal cross-section. Particles of different sizes undergo a random walk due to interactions with the environment (modeled as noise). We study how the diffusion properties change with particle size as a function of pore width. The numerical analysis of diffusion-driven transport through narrowing conical channels reveals its effective subdiffusive, i.e., anomalous, character.