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"Medical Image Processing"
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Data mining in biomedical imaging, signaling, and systems
\"Data mining has rapidly emerged as an enabling, robust, and scalable technique to analyze data for novel patterns, trends, anomalies, structures, and features that can be employed for a variety of biomedical and clinical domains. Approaching the techniques and challenges of image mining from a multidisciplinary perspective, this book presents data mining techniques, methodologies, algorithms, and strategies to analyze biomedical signals and images. Written by experts, the text addresses data mining paradigms for the development of biomedical systems. It also includes special coverage of knowledge discovery in mammograms and emphasizes both the diagnostic and therapeutic fields of eye imaging\"--Provided by publisher.
Biomedical Signal Analysis - Contemporary Methods and Applications
by
Meyer-Bäse, Anke
,
Theis, Fabian J
in
Biochemistry, Biology & Biotechnology
,
Biological Engineering
,
Biology
2010
This book describes a broad range of methods, including continuous and discrete Fourier transforms, independent component analysis (ICA), dependent component analysis, neural networks, and fuzzy logic methods. The book then discusses applications of these theoretical tools to practical problems in everyday biosignal processing, considering such subjects as exploratory data analysis and low-frequency connectivity analysis in MRI, MRI signal processing including lesion detection in breast MRI, dynamic cerebral contrast-enhanced perfusion MRI, skin lesion classification, and microscopic slice image processing and automatic labeling.
Fundamentals of light microscopy and electronic imaging
by
Murphy, Douglas B.
,
Davidson, Michael W. (Michael Wesley)
in
Image Processing, Computer-Assisted
,
Microscopy
2013,2012
Fundamentals of Light Microscopy and Electronic Imaging, Second Edition provides a coherent introduction to the principles and applications of the integrated optical microscope system, covering both theoretical and practical considerations. It expands and updates discussions of multi-spectral imaging, intensified digital cameras, signal colocalization, and uses of objectives, and offers guidance in the selection of microscopes and electronic cameras, as well as appropriate auxiliary optical systems and fluorescent tags.The book is divided into three sections covering optical principles in diffraction and image formation, basic modes of light microscopy, and components of modern electronic imaging systems and image processing operations. Each chapter introduces relevant theory, followed by descriptions of instrument alignment and image interpretation. This revision includes new chapters on live cell imaging, measurement of protein dynamics, deconvolution microscopy, and interference microscopy. PowerPoint slides of the figures as well as other supplementary materials for instructors are available at a companion website: www.wiley.com/go/murphy/lightmicroscopy
Visual computing for medicine : theory, algorithms, and applications
by
Botha, Charl
,
Preim, Bernhard
in
Computer graphics
,
Computer-assisted surgery
,
Diagnostic imaging
2014,2013
Visual Computing for Medicine, Second Edition, offers cutting-edge visualization techniques and their applications in medical diagnosis, education, and treatment. The book includes algorithms, applications, and ideas on achieving reliability of results and clinical evaluation of the techniques covered. Preim and Botha illustrate visualization techniques from research, but also cover the information required to solve practical clinical problems. They base the book on several years of combined teaching and research experience. This new edition includes six new chapters on treatment planning, guidance and training; an updated appendix on software support for visual computing for medicine; and a new global structure that better classifies and explains the major lines of work in the field. Complete guide to visual computing in medicine, fully revamped and updated with new developments in the fieldIllustrated in full colorIncludes a companion website offering additional content for professors, source code, algorithms, tutorials, videos, exercises, lessons, and more
Hyperspectral and multispectral image processing for gross-level tumor detection in skin lesions: a systematic review
2022
Significance: Skin cancer is one of the most prevalent cancers worldwide. In the advent of medical digitization and telepathology, hyper/multispectral imaging (HMSI) allows for noninvasive, nonionizing tissue evaluation at a macroscopic level.
Aim: We aim to summarize proposed frameworks and recent trends in HMSI-based classification and segmentation of gross-level skin tissue.
Approach: A systematic review was performed, targeting HMSI-based systems for the classification and segmentation of skin lesions during gross pathology, including melanoma, pigmented lesions, and bruises. The review adhered to the 2020 Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) guidelines. For eligible reports published from 2010 to 2020, trends in HMSI acquisition, preprocessing, and analysis were identified.
Results: HMSI-based frameworks for skin tissue classification and segmentation vary greatly. Most reports implemented simple image processing or machine learning, due to small training datasets. Methodologies were evaluated on heavily curated datasets, with the majority targeting melanoma detection. The choice of preprocessing scheme influenced the performance of the system. Some form of dimension reduction is commonly applied to avoid redundancies that are inherent in HMSI systems.
Conclusions: To use HMSI for tumor margin detection in practice, the focus of system evaluation should shift toward the explainability and robustness of the decision-making process.
Journal Article
Mathematics and Physics of Emerging Biomedical Imaging
by
National Research Council (U.S.). Committee on the Mathematics and Physics of Emerging Dynamic Biomedical Imaging
,
Institute of Medicine (U.S.). Board on Biobehavioral Sciences and Mental Disorders
in
Diagnostic Imaging
,
Diagnostic imaging -- Mathematics
,
Image Processing, Computer-Assisted
2000,1996
This cross-disciplinary book documents the key research challenges in the mathematical sciences and physics that could enable the economical development of novel biomedical imaging devices. It is hoped that the infusion of new insights from mathematical scientists and physicists will accelerate progress in imaging. Incorporating input from dozens of biomedical researchers who described what they perceived as key open problems of imaging that are amenable to attack by mathematical scientists and physicists, this book introduces the frontiers of biomedical imaging, especially the imaging of dynamic physiological functions, to the educated nonspecialist.
Ten imaging modalities are covered, from the well-established (e.g., CAT scanning, MRI) to the more speculative (e.g., electrical and magnetic source imaging). For each modality, mathematics and physics research challenges are identified and a short list of suggested reading offered. Two additional chapters offer visions of the next generation of surgical and interventional techniques and of image processing. A final chapter provides an overview of mathematical issues that cut across the various modalities.
Handbook of medical imaging : processing and analysis
2000
In recent years, the remarkable advances in medical imaging instruments have increased their use considerably for diagnostics as well as planning and follow-up of treatment. Emerging from the fields of radiology, medical physics and engineering, medical imaging no longer simply deals with the technology and interpretation of radiographic images. The limitless possibilities presented by computer science and technology, coupled with engineering advances in signal processing, optics and nuclear medicine have created the vastly expanded field of medical imaging. The Handbook of Medical Imaging is the first comprehensive compilation of the concepts and techniques used to analyze and manipulate medical images after they have been generated or digitized. The Handbook is organized in six sections that relate to the main functions needed for processing: enhancement, segmentation, quantification, registration, visualization as well as compression storage and telemedicine. * Internationally renowned authors(Johns Hopkins, Harvard, UCLA, Yale, Columbia, UCSF)* Includes imaging and visualization* Contains over 60 pages of stunning, four-color images
Medical Imaging
by
Anthony B. Wolbarst, Patrizio Capasso, Andrew R. Wyant
in
Diagnostic Imaging
,
Image Enhancement
,
Imaging systems in medicine
2013
\"An excellent primer on medical imaging for all members of the medical profession... including non-radiological specialists. It is technically solid and filled with diagrams and clinical images illustrating important points, but it is also easily readable... So many outstanding chapters... The book uses little mathematics beyond simple algebra [and] presents complex ideas in very understandable terms.\"
— Melvin E. Clouse, MD, Vice Chairman Emeritus, Department of Radiology, Beth Israel Deaconess Medical Center and Deaconess Professor of Radiology, Harvard Medical School
A well-known medical physicist and author, an interventional radiologist, and an emergency room physician with no special training in radiology have collaborated to write, in the language familiar to physicians, an introduction to the technology and clinical applications of medical imaging. It is intentionally brief and not overly detailed, intended to help clinicians with very little free time rapidly gain enough command of the critically important imaging tools of their trade to be able to discuss them confidently with medical and technical colleagues; to explain the general ideas accurately to students, nurses, and technologists; and to describe them effectively to concerned patients and loved ones. Chapter coverage includes:
* Introduction: Dr. Doe's Headaches
* Sketches of the Standard Imaging Modalities
* Image Quality and Dose
* Creating Subject Contrast in the Primary X-Ray Image
* Twentieth-Century (Analog) Radiography and Fluoroscopy
* Radiation Dose and Radiogenic Cancer Risk
* Twenty-First-Century (Digital) Imaging
* Digital Planar Imaging
* Computed Tomography
* Nuclear Medicine (Including SPECT and PET)
* Diagnostic Ultrasound (Including Doppler)
* MRI in One Dimension and with No Relaxation
* Mapping T1 and T2 Proton Spin Relaxation in 3D
* Evolving and Experimental Modalities
Smart Diagnosis of Adenocarcinoma Using Convolution Neural Networks and Support Vector Machines
by
Ayesha Shaik
,
Dewanshi Paul
,
Balasundaram Ananthakrishnan
in
Accuracy
,
Algorithms
,
Artificial intelligence
2023
Adenocarcinoma is a type of cancer that develops in the glands present on the lining of the organs in the human body. It is found that histopathological images, obtained as a result of biopsy, are the most definitive way of diagnosing cancer. The main objective of this work is to use deep learning techniques for the detection and classification of adenocarcinoma using histopathological images of lung and colon tissues with minimal preprocessing. Two approaches have been utilized. The first method entails creating two CNN architectures: CNN with a Softmax classifier (AdenoCanNet) and CNN with an SVM classifier (AdenoCanSVM). The second approach corresponds to training some of the prominent existing architecture such as VGG16, VGG19, LeNet, and ResNet50. The study aims at understanding the performance of various architectures in diagnosing using histopathological images with cases taken separately and taken together, with a full dataset and a subset of the dataset. The LC25000 dataset used consists of 25,000 histopathological images, having both cancerous and normal images from both the lung and colon regions of the human body. The accuracy metric was taken as the defining parameter for determining and comparing the performance of various architectures undertaken during the study. A comparison between the several models used in the study is presented and discussed.
Journal Article
GPU-Enabled Volume Renderer for Use with MATLAB
Traditional tools, such as 3D Slicer, Fiji, and MATLAB®, often encounter limitations in rendering performance and data management as the dataset sizes increase. This work presents a GPU-enabled volume renderer with a MATLAB® interface that addresses these issues. The proposed renderer uses flexible memory management and leverages the GPU texture-mapping features of NVIDIA devices. It transfers data between the CPU and the GPU only in the case of a data change between renderings, and uses texture memory to make use of specific hardware benefits of the GPU and improve the quality. A case study using the ViBE-Z zebrafish larval dataset demonstrated the renderer’s ability to produce visualizations while managing extensive data effectively within the MATLAB® environment. The renderer is available as open-source software.
Journal Article