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Body size is a key life-history trait that influences community assembly by affecting how ecological processes operate at the organism level. However, the extent to which the relative influences of ecological processes mediate the assembly of differentially sized soil organisms is still unknown. Here, we investigate the community assembly of differentially sized soil microorganisms and microfauna using a continental-scale sampling effort combined with a global-scale meta-analysis. Our results reveal a general relationship between organism body size and the stochastic-deterministic balance operating on community assembly. The smallest microorganisms (bacteria) are relatively more influenced by dispersal-based stochastic processes, while larger ones (fungi, protists and nematodes) are more structured by selection-based deterministic processes. This study elucidates a significant and consistent relationship between an organism life-history trait and how distinct ecological processes operate in mediating their respective community assemblages, thus providing a better understanding of the mechanisms supporting soil biodiversity. It is unclear whether body size affects community assembly mechanisms of soil biota. Here, the authors analyse soil microbial and nematode communities sampled along a 4000-km transect in China and global soil microbiome data to show that bacterial assembly is governed by high dispersal, whereas larger taxa are more influenced by deterministic processes.

Background This study focused on evaluating the diversity and richness of the edaphic macrofauna in eight banana farms in the western zone of Nicaragua. Methods The sampling design was random and descriptive, it was divided into two phases, the first was the collection of the sample, and the second was the classification, coding, and storage of the extracted macrofauna populations. Subsequently, the indices of diversity and species richness, relative abundance, by functional groups were estimated. Results The results showed that the relative abundance of biodiversity was higher in the 0-20 cm soil depth stratum than in the branch and leaf biomass strata. The values of the diversity indices of Dominion, Simpson, Shanon, Margalef, and Equity were in the normal range, with a tendency towards low diversity. Likewise, in the richness of species, the Dominant or most abundant genus were earthworms (Oligochaeta) and Hymenoptera ( Solenopsis, Leptothorax, Camponotus, Pheidole), indicating the directly proportional relationship, that is to say, that the greater the number of earthworms the production increases and the greater the number of Hymenoptera it decreases, confirmed with the Pearson correlation coefficient with a reliability of 95%. Conclusions It was concluded that based on the estimates of the diversity indicators, two detritivore genus (earthworms and Hymenoptera) were the ones with the greatest presence, being important in the production of the banana agrosystem due to the decomposition of organic matter and its nutritional contribution to the plant. We observed a direct correlation with earthworms and an indirect relationship with Hymenoptera.

Size-structured food webs form integrated trophic systems where energy is channeled from small to large consumers. Empirical evidence suggests that size structure prevails in aquatic ecosystems, whereas in terrestrial food webs trophic position is largely independent of body size. Compartmentalization of energy channeling according to size classes of consumers was suggested as a mechanism that underpins functioning and stability of terrestrial food webs including those belowground, but their structure has not been empirically assessed across the whole size spectrum. Here we used stable isotope analysis and metabolic regressions to describe size structure and energy use in eight belowground communities with consumers spanning 12 orders of magnitude in living body mass, from protists to earthworms. We showed a negative correlation between trophic position and body mass in invertebrate communities and a remarkable nonlinearity in community metabolism and trophic positions across all size classes. Specifically, we found that the correlation between body mass and trophic level is positive in the small-sized (protists, nematodes, arthropods below 1 μg in body mass), neutral in the medium-sized (arthropods of 1 lg to 1 mg), and negative in the large-sized consumers (large arthropods, earthworms), suggesting that these groups form compartments with different trophic organization. Based on this pattern, we propose a concept of belowground food webs being composed of (1) size-structured micro-food web driving fast energy channeling and nutrient release, for example in microbial loop; (2) arthropod macro-food web with no clear correlation between body size and trophic level, hosting soil arthropod diversity and subsidizing aboveground predators; and (3) “trophic whales,” sequestering energy in their large bodies and restricting its propagation to higher trophic levels in belowground food webs. The three size compartments are based on a similar set of basal resources, but contribute to different ecosystem-level functions and respond differently to variations in climate, soil characteristics and land use. We suggest that the widely used vision of resource-based energy channeling in belowground food webs can be complemented with size-based energy channeling, where ecosystem multifunctionality, biodiversity, and stability are supported by a balance across individual size compartments.

Fomes fomentarius is a widespread, wood-rotting fungus of temperate, broadleaved forests. Although the fruiting bodies of F. fomentarius persist for multiple years, little is known about its associated microbiome or how these recalcitrant structures are ultimately decomposed. Here we used metagenomics and metatranscriptomics to analyse the microbial community associated with healthy living and decomposing F. fomentarius fruiting bodies to assess the functional potential of the fruiting body-associated microbiome and to determine the main players involved in fruiting body decomposition. F. fomentarius sequences in the metagenomes were replaced by bacterial sequences as the fruiting body decomposed. Most CAZymes expressed in decomposing fruiting bodies targeted components of the fungal cell wall with almost all chitin-targeting sequences, plus a high proportion of beta-glucan-targeting sequences, belonging to Arthropoda. We suggest that decomposing fruiting bodies of F. fomentarius represent a habitat rich in bacteria, while its decomposition is primarily driven by Arthropoda. Decomposing fruiting bodies thus represent a specific habitat supporting both microorganisms and microfauna.

Background: This study focused on evaluating the diversity and richness of the edaphic macrofauna in eight banana farms in the western zone of Nicaragua. Methods: The sampling design was random and descriptive, it was divided into two phases, the first was the collection of the sample, and the second was the classification, coding, and storage of the extracted macrofauna populations. Subsequently, the indices of diversity and species richness, relative abundance, by functional groups were estimated. Results: The results showed that the relative abundance of biodiversity was higher in the 0-20 cm soil depth stratum than in the branch and leaf biomass strata. The values ​​of the diversity indices of Dominion, Simpson, Shanon, Margalef, and Equity were in the normal range, with a tendency towards low diversity. Likewise, in the richness of species, the Dominant or most abundant genus were earthworms (Oligochaeta) and Hymenoptera ( Solenopsis, Leptothorax, Camponotus, Pheidole), indicating the directly proportional relationship, that is to say, that the greater the number of earthworms the production increases and the greater the number of Hymenoptera it decreases, confirmed with the Pearson correlation coefficient with a reliability of 95%. Conclusions: It was concluded that based on the estimates of the diversity indicators, two detritivore genus (earthworms and Hymenoptera) were the ones with the greatest presence, being important in the production of the banana agrosystem due to the decomposition of organic matter and its nutritional contribution to the plant. We observed a direct correlation with earthworms and an indirect relationship with Hymenoptera.

It is well established that application of biochar to soils can promote soil fertility, which ultimately may enhance plant growth. While many mechanisms have been proposed to explain this, one specific mechanism, the “microbial refugia hypothesis,” suggests that biochar may provide physical protection for soil microbe from soil microfauna that otherwise exert top‐down control on microbial biomass and activity. We tested the microbial refugia hypothesis by incubating two boreal soils with and without biochar derived from a wood mixture of boreal tree species (Picea abies and Pinus sylvestris), and with and without soil nematodes. We measured phospholipid fatty acids (PLFA) as a relative measure of microbial biomass, and several variables indicative of microbial activity, including extractable nutrient concentrations (NH4+, NO3−, and PO4−), heterotrophic N2‐fixation, and soil respiration. Contrary to our expectations, we found that biochar by itself did not stimulate microbial biomass or activity. Furthermore, we found that nematode addition to soil stimulated rather than depressed the biomass of several bacterial PLFA groups. Finally, interactive effects between the nematode treatment and biochar never worked in a way that supported the microbial refugia hypothesis. Our findings suggest that a typical boreal biochar applied to boreal soils may not have the same stimulatory effect on microbial biomass and activity that has been shown in some other ecosystems, and that enhanced plant growth in response to biochar addition sometimes observed in boreal environments is likely due to other mechanisms, such as direct nutrient supply from biochar or amelioration of soil pH. Biochar has been proposed increase soil functioning by protecting soil microbes from consumption by soil grazers. We tested this by inoculating biochar amended soils with microbes and with and without nematodes. We found no support for that biochar serves as a soil refugium.

Background Agroforestry systems have enhanced diversity of cultivated plants compared to monocultures, and are expected to affect associated biodiversity. Despite a growing body of literature on the importance of soil fauna, the known effects of different agroforestry types on soil fauna communities and functions have not yet been synthesized. Scope We scanned publications on soil fauna in agroforestry systems. Our aim was to give an overview of strengths and weaknesses of the existing data, in terms of spatial coverage and representation of diverse agroforestry types and soil fauna groups and functions. Conclusions Our database includes sixty-seven articles, mostly focusing on tropical regions and perennial crop agroforestry systems. Soil macrofauna are the most studied fauna group. The most common question addressed is the comparison of the effect of land use types on communities. Effects on fauna abundance and diversity are mainly positive when agroforestry is compared to cropland, and neutral or negative when compared to forests. Few publications actually measure soil fauna functions, or characterize their interactions and evolution in time and space depending on system design and management. Further work on soil fauna in agroforestry should harness ecological theory and address questions of spatial structure and scale, temporal dynamics and ecological interaction networks and how they determine ecosystem functioning.

Soil heterotrophic respiration and nutrient mineralization are strongly affected by environmental conditions, in particular by moisture fluctuations triggered by rainfall events. When soil moisture decreases, so does decomposers' activity, with microfauna generally undergoing stress sooner than bacteria and fungi. Despite differences in the responses of individual decomposer groups to moisture availability (e.g., bacteria are typically more sensitive than fungi to water stress), we show that responses of decomposers at the community level are different in soils and surface litter, but similar across biomes and climates. This results in a nearly constant soil-moisture threshold corresponding to the point when biological activity ceases, at a water potential of about −14 MPa in mineral soils and −36 MPa in surface litter. This threshold is shown to be comparable to the soil moisture value where solute diffusion becomes strongly inhibited in soil, while in litter it is dehydration rather than diffusion that likely limits biological activity around the stress point. Because of these intrinsic constraints and lack of adaptation to different hydro-climatic regimes, changes in rainfall patterns (primary drivers of the soil moisture balance) may have dramatic impacts on soil carbon and nutrient cycling.

Tardigrades are omnipresent microfauna with scarce record on their ecology in soils. Here, we investigated soil inhabiting tardigrade communities in five contrasting polar habitats, evaluating their abundance, diversity, species richness, and species composition. Moreover, we measured selected soil physico‐chemical properties to find the drivers of tardigrade distribution among these habitats. In spite of reported tardigrade viability in extreme conditions, glacier forelands represented a habitat almost devoid of tardigrades. Even dry and wet tundra with soil developing for over more than 10 000 years held low abundances compared to usual numbers of tardigrades in temperate habitats. Polar habitats also differ in species composition, with Diaforobiotus islandicus being typical species for dry and Hypsibius exemplaris for wet tundra. Overall, tardigrade abundance was affected by the content of nutrients as well as physical properties of soil, i.e. content of total nitrogen (TN), total organic carbon (TOC), stoniness, soil texture and the water holding capacity (WHC). While diversity and species composition were significantly related to soil physical properties such as the bulk density (BD), soil texture, stoniness, and WHC. Physical structure of environment was, therefore, an important predictor of tardigrade distribution in polar habitats. Since many studies failed to identify significant determinants of tardigrade distribution, we encourage scientists to include physical properties of tardigrade habitats as explanatory variables in their studies. Arctic soil tardigrade communities thrive in habitats with robust plant growth such as dry and wet tundra. Conversely, these communities are virtually absent in glacier forelands and soil crusts. The abundance of tardigrades is intricately connected to soil organic carbon levels, while diversity and species composition are closely associated with soil physical properties such as the BD, texture, stoniness, and water‐holding capacity.

For one-third of Earth’s land surface, precipitation passes through tree canopies (as throughfall or stemflow) before entering watersheds. Over a century of research has described fluxes of water and solutes along these “hydrologic highways”, yet little is known about their “traffic” –that is, the organisms and nonliving particulates frequently discarded from water samples after filtration in the lab. A comprehensive understanding of the composition of sub-canopy precipitation is necessary to estimate the total nutrient and pollutant inputs to watersheds for redistribution downstream, as well as to systematically investigate precipitation effects on organismal exchanges along the atmosphere–plant–soil continuum. Here, we review current concepts and research showing that the hydrologic highways from tree canopies to soil carry ecologically relevant quantities of biologic (viruses, microbes, microfauna, and meiofauna) and abiotic particulates. Their fate may have important consequences for the biogeochemistry and biodiversity of terrestrial systems.