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Background In this paper, we introduce an image analysis approach for spatiotemporal segmentation, quantification, and visualization of movement or contraction patterns in 2D+t and 3D+t microscopy recordings of biological tissues. The development of this pipeline was motivated by the observation of contraction waves in the extra-embryonic membranes of the red flour beetle Tribolium castaneum . These contraction waves are a novel finding, whose origin and function are not yet understood. The objective of the proposed approach is to analyze the dynamics of the extra-embryonic membranes in order to provide quantitative evidence for the existence of contraction waves during late stages of embryonic development. Results We apply the pipeline to live-imaging data of Tribolium embryonic development recorded with light-sheet fluorescence microscopy. The proposed pipeline integrates particle image velocimetry (PIV) for quantitative movement analysis, surface detection, tissue cartography, and algorithmic identification of characteristic movement dynamics. We demonstrate that our approach reliably and efficiently detects contraction waves in both 2D+t and 3D+t recordings and enables automated quantitative analyses, such as measuring the area involved in contractile behavior, wave duration and frequency, spatiotemporal location of the contractile regions, and their relation to the underlying velocity distribution. Conclusions The pipeline will be employed in future work to conduct a large-scale characterization and quantification of contraction wave behavior in Tribolium development and can be readily adapted for the identification and segmentation of characteristic tissue dynamics in other biological systems.

The aim of this contribution is to present a segmentation method for the identification of voluntary movements from inertial data acquired through a single inertial measurement unit placed on the subject’s wrist. Inertial data were recorded from 25 healthy subjects while performing 75 consecutive reach-to-grasp movements. The approach herein presented, called DynAMoS, is based on an adaptive thresholding step on the angular velocity norm, followed by a statistics-based post-processing on the movement duration distribution. Post-processing aims at reducing the number of erroneous transitions in the movement segmentation. We assessed the segmentation quality of this method using a stereophotogrammetric system as the gold standard. Two popular methods already presented in the literature were compared to DynAMoS in terms of the number of movements identified, onset and offset mean absolute errors, and movement duration. Moreover, we analyzed the sub-phase durations of the drinking movement to further characterize the task. The results show that the proposed method performs significantly better than the two state-of-the-art approaches (i.e., percentage of erroneous movements = 3%; onset and offset mean absolute error < 0.08 s), suggesting that DynAMoS could make more effective home monitoring applications for assessing the motion improvements of patients following domicile rehabilitation protocols.

Motor planning critically supports efficient hand grasping and object manipulation, involving the precise integration of sensory cues and anticipatory motor commands. Current methods often inadequately separate motor planning from movement execution, thus limiting our understanding of anticipatory motor control mechanisms. This study aimed to establish and validate a structured methodological approach to investigate motor planning and execution during grasping tasks, using advanced motion tracking technology and standardized 3D-printed geometric objects. Twenty-one participants performed a grasp-and-place task, requiring manipulation of abstract, non-semantic objects under varying rotation angles (0°, 90°, 180°, 270°). High-resolution kinematic data were captured using an infrared motion tracking system (Smart-DX, BTS Bioengineering, Italy). Novel computational analyses segmented each trial into distinct phases: total movement, movement initiation, reaching, maximal grasp aperture, and object placement. Wrist path length and execution time of each phase were statistically analyzed to assess the influence of object rotation on motor planning and execution. Object rotation significantly impacted motor planning, as evidenced by prolonged initiation times and altered grasp-related temporal parameters. Specifically, movements involving rotation demonstrated increased movement initiation times, greater grasp apertures, extended placement durations, and longer wrist trajectories compared to non-rotated conditions. Interestingly, symmetrical rotations (180°) facilitated faster and more efficient movements compared to asymmetrical rotations (90°, 270°). Our validated methodological framework enables precise isolation and assessment of motor planning processes during grasping movements. This paradigm provides robust tools for fundamental motor control research and has potential clinical applications for evaluating motor planning deficits in patients with neurological impairments.

In manufacturing, traditional task pre-programming methods limit the efficiency of human–robot skill transfer. This paper proposes a novel task-learning strategy, enabling robots to learn skills from human demonstrations flexibly and generalize skills under new task situations. Specifically, we establish a markerless vision capture system to acquire continuous human hand movements and develop a threshold-based heuristic segmentation algorithm to segment the complete movements into different movement primitives (MPs) which encode human hand movements with task-oriented models. For movement primitive learning, we adopt a Gaussian mixture model and Gaussian mixture regression (GMM-GMR) to extract the optimal trajectory encapsulating sufficient human features and utilize dynamical movement primitives (DMPs) to learn for trajectory generalization. In addition, we propose an improved visuo-spatial skill learning (VSL) algorithm to learn goal configurations concerning spatial relationships between task-relevant objects. Only one multioperation demonstration is required for learning, and robots can generalize goal configurations under new task situations following the task execution order from demonstration. A series of peg-in-hole experiments demonstrate that the proposed task-learning strategy can obtain exact pick-and-place points and generate smooth human-like trajectories, verifying the effectiveness of the proposed strategy.

Animal movement plays a key role in many ecological processes and has a direct influence on an individual’s fitness at several scales of analysis (i.e., next-step, subdiel, day-by-day, seasonal). This highlights the need to dissect movement behavior at different spatio-temporal scales and develop hierarchical movement tools for generating realistic tracks to supplement existing single-temporal-scale simulators. In reality, animal movement paths are a concatenation of fundamental movement elements (FuMEs: e.g., a step or wing flap), but these are not generally extractable from a relocation time-series track (e.g., sequential GPS fixes) from which step-length (SL, aka velocity) and turning-angle (TA) time series can be extracted. For short, fixed-length segments of track, we generate their SL and TA statistics (e.g., means, standard deviations, correlations) to obtain segment-specific vectors that can be cluster into different types. We use the centroids of these clusters to obtain a set of statistical movement elements (StaMEs; e.g.,directed fast movement versus random slow movement elements) that we use as a basis for analyzing and simulating movement tracks. Our novel concept is that sequences of StaMEs provide a basis for constructing and fitting step-selection kernels at the scale of fixed-length canonical activity modes: short fixed-length sequences of interpretable activity such as dithering, ambling, directed walking, or running. Beyond this, variable length pure or characteristic mixtures of CAMs can be interpreted as behavioral activity modes (BAMs), such as gathering resources (a sequence of dithering and walking StaMEs) or beelining (a sequence of fast directed-walk StaMEs interspersed with vigilance and navigation stops). Here we formulate a multi-modal, step-selection kernel simulation framework, and construct a 2-mode movement simulator (Numerus ANIMOVER_1), using Numerus RAMP technology. These RAMPs run as stand alone applications: they require no coding but only the input of selected parameter values. They can also be used in R programming environments as virtual R packages. We illustrate our methods for extracting StaMEs from both ANIMOVER_1 simulated data and empirical data from two barn owls ( Tyto alba ) in the Harod Valley, Israel. Overall, our new bottom-up approach to path segmentation allows us to both dissect real movement tracks and generate realistic synthetic ones, thereby providing a general tool for testing hypothesis in movement ecology and simulating animal movement in diverse contexts such as evaluating an individual’s response to landscape changes, release of an individual into a novel environment, or identifying when individuals are sick or unusually stressed.

Background Movement is central to understanding the ecology of animals. The most robustly definable segments of an individual’s lifetime track are its diel activity routines (DARs). This robustness is due to fixed start and end points set by a 24-h clock that depends on the individual’s quotidian schedule. An analysis of day-to-day variation in the DARs of individuals, their comparisons among individuals, and the questions that can be asked, particularly in the context of lunar and annual cycles, depends on the relocation frequency and spatial accuracy of movement data. Here we present methods for categorizing the geometry of DARs for high frequency (seconds to minutes) movement data. Methods Our method involves an initial categorization of DARs using data pooled across all individuals. We approached this categorization using a Ward clustering algorithm that employs four scalar “whole-path metrics” of trajectory geometry: 1. net displacement (distance between start and end points), 2. maximum displacement from start point, 3. maximum diameter , and 4. maximum width . We illustrate the general approach using reverse-GPS data obtained from 44 barn owls, Tyto alba , in north-eastern Israel. We conducted a principle components analysis (PCA) to obtain a factor, PC1 , that essentially captures the scale of movement. We then used a generalized linear mixed model with PC1 as the dependent variable to assess the effects of age and sex on movement. Results We clustered 6230 individual DARs into 7 categories representing different shapes and scale of the owls nightly routines. Five categories based on size and elongation were classified as closed (i.e. returning to the same roost), one as partially open (returning to a nearby roost) and one as fully open (leaving for another region). Our PCA revealed that the DAR scale factor, PC1 , accounted for 86.5% of the existing variation. It also showed that PC2 captures the openness of the DAR and accounted for another 8.4% of the variation. We also constructed spatio-temporal distributions of DAR types for individuals and groups of individuals aggregated by age, sex, and seasonal quadrimester, as well as identify some idiosyncratic behavior of individuals within family groups in relation to location. Finally, we showed in two ways that DARs were significantly larger in young than adults and in males than females. Conclusion Our study offers a new method for using high-frequency movement data to classify animal diel movement routines. Insights into the types and distributions of the geometric shape and size of DARs in populations may well prove to be more invaluable for predicting the space-use response of individuals and populations to climate and land-use changes than other currently used movement track methods of analysis.

Nonlinear registration of individual brain MRI scans to standard brain templates is common practice in neuroimaging and multiple registration algorithms have been developed and refined over the last 20 years. However, little has been done to quantitatively compare the available algorithms and much of that work has exclusively focused on cortical structures given their importance in the fMRI literature. In contrast, for clinical applications such as functional neurosurgery and deep brain stimulation (DBS), proper alignment of subcortical structures between template and individual space is important. This allows for atlas-based segmentations of anatomical DBS targets such as the subthalamic nucleus (STN) and internal pallidum (GPi). Here, we systematically evaluated the performance of six modern and established algorithms on subcortical normalization and segmentation results by calculating over 11,000 nonlinear warps in over 100 subjects. For each algorithm, we evaluated its performance using T1-or T2-weighted acquisitions alone or a combination of T1-, T2-and PD-weighted acquisitions in parallel. Furthermore, we present optimized parameters for the best performing algorithms. We tested each algorithm on two datasets, a state-of-the-art MRI cohort of young subjects and a cohort of subjects age- and MR-quality-matched to a typical DBS Parkinson's Disease cohort. Our final pipeline is able to segment DBS targets with precision comparable to manual expert segmentations in both cohorts. Although the present study focuses on the two prominent DBS targets, STN and GPi, these methods may extend to other small subcortical structures like thalamic nuclei or the nucleus accumbens. •We compared six nonlinear deformation algorithms for atlas-based segmentation of two common DBS targets, the STN and GPi.•Parameters of the best performing algorithms were optimized to maximize precision of subcortical deformations.•These optimized pipelines are able to segment DBS targets with precision that is comparable to manual expert segmentations.•The optimized pipelines have been made available to the scientific community through the open source toolbox Lead-DBS.

We propose a new, valuation-based measure of world equity market segmentation. While we observe decreased levels of segmentation in many countries, the level of segmentation remains significant in emerging markets. We characterize the factors that account for variation in market segmentation both through time as well as across countries. Both a country's regulation with respect to foreign capital flows and certain nonregulatory factors are important. In particular, we identify a country's political risk profile and its stock market development as two additional local segmentation factors as well as the U.S. corporate credit spread as a global segmentation factor.

Brain tumor occurs owing to uncontrolled and rapid growth of cells. If not treated at an initial phase, it may lead to death. Despite many significant efforts and promising outcomes in this domain, accurate segmentation and classification remain a challenging task. A major challenge for brain tumor detection arises from the variations in tumor location, shape, and size. The objective of this survey is to deliver a comprehensive literature on brain tumor detection through magnetic resonance imaging to help the researchers. This survey covered the anatomy of brain tumors, publicly available datasets, enhancement techniques, segmentation, feature extraction, classification, and deep learning, transfer learning and quantum machine learning for brain tumors analysis. Finally, this survey provides all important literature for the detection of brain tumors with their advantages, limitations, developments, and future trends.

Changes in gait patterns provide important information about individuals’ health. To perform sensor based gait analysis, it is crucial to develop methodologies to automatically segment single strides from continuous movement sequences. In this study we developed an algorithm based on time-invariant template matching to isolate strides from inertial sensor signals. Shoe-mounted gyroscopes and accelerometers were used to record gait data from 40 elderly controls, 15 patients with Parkinson’s disease and 15 geriatric patients. Each stride was manually labeled from a straight 40 m walk test and from a video monitored free walk sequence. A multi-dimensional subsequence Dynamic Time Warping (msDTW) approach was used to search for patterns matching a pre-defined stride template constructed from 25 elderly controls. F-measure of 98% (recall 98%, precision 98%) for 40 m walk tests and of 97% (recall 97%, precision 97%) for free walk tests were obtained for the three groups. Compared to conventional peak detection methods up to 15% F-measure improvement was shown. The msDTW proved to be robust for segmenting strides from both standardized gait tests and free walks. This approach may serve as a platform for individualized stride segmentation during activities of daily living.