Explore the vast range of titles available.

The Neodermata is a group of parasitic flatworms that includes the classes Trematoda, Cestoda, and Monogenea. Understanding the phylogenetic relationships within the Neodermata has been a longstanding challenge. Molecular studies utilizing different datasets have produced variable results, leading to differing evolutionary hypotheses. Resolving the phylogenetic relationships requires careful consideration of the molecular targets and sequences used. In this study, our objective was to investigate the topological variability of phylogenetic trees by examining different mitochondrial genes, molecular datasets (nucleotides and amino acids), as well as the 18S and 28S nuclear rRNA genes, and three software packages used for phylogenetic analysis. To evaluate the utility of different markers, we constructed 96 unilocus trees and nine multilocus trees. Our findings revealed that each gene provided unique information and resulted in different topologies depending on the sequences used, with only few mitochondrial genes indicating the monophyly of the Monogenea. Multilocus analyses mitochondrial and mitochondrial + 18S + 28S produced a consistent topology, supporting the monophyly of each of the four major neodermatan lineages (Cestoda, Trematoda, Monopisthocotylea, and Polyopisthocotylea). Notably, the monophyly of the Polyopisthocotylea and Cestoda consistently appeared in the different analyses. Conversely, we observed discrepancies between results obtained from mitochondrial genes and nuclear genes. This study contributes to our understanding of the phylogeny of the Neodermata by examining the topological variability of phylogenetic trees using both mitochondrial and nuclear genes. Our results emphasize that carefully selected molecular markers and multilocus approaches are crucial for illuminating the complex evolutionary history within the Neodermata.

An updated checklist of adult tapeworms (Platyhelminthes: Cestoda) that parasitize wild North American amphibians and reptiles is presented: A total of 58 species grouped in 15 genera, 5 families, and 3 orders, are registered; these infect a total of 90 species of reptiles and 88 species of amphibians in the region. An illustrated identification key for the families and genera listed is proposed.

Studies of forces driving interlineage variability in the evolutionary rates (both sequence and architecture) of mitochondrial genomes often produce contradictory results. Flatworms (Platyhelminthes) exhibit the fastest-evolving mitogenomic sequences among all bilaterian phyla. To test the effects of multiple factors previously associated with different aspects of mitogenomic evolution, we used mitogenomes of 223 flatworm species, phylogenetic multilevel regression models, and causal inference. Thermic host environment (endothermic vs. ectothermic) had nonsignificant impacts on both sequence evolution and mitogenomic size. Mitogenomic gene order rearrangements (GORR) were mostly positively correlated with mitogenomic size (R2 ≈ 20–30%). Longevity was not (negatively) correlated with sequence evolution in flatworms. The predominantly free-living “turbellaria” exhibited much shorter branches and faster-evolving mitogenomic architecture than parasitic Neodermata. As a result, “parasitism” had a strong explanatory power on the branch length variability (>90%), and there was a negative correlation between GORR and branch length. However, the stem branch of Neodermata comprised 63.6% of the total average branch length. This evolutionary period was also marked by a high rate of gene order rearrangements in the ancestral Neodermata. We discuss how this period of rapid evolution deep in the evolutionary history may have decoupled sequence evolution rates from longevity and GORR, and overestimated the explanatory power of “parasitism”. This study shows that impacts of variables often vary across lineages, and stresses the importance accounting for the episodic nature of evolutionary patterns in studies of mitogenomic evolution.

Digeneans of the family Notocotylidae differ from other digeneans in their peculiar eggs. The eggs feature a pair of long filaments extending from their poles, and their contents differ significantly from what we expect to observe in the eggs of digeneans. Instead of a ciliated miracidium larva, the notocotylid egg contains a tiny few-celled mother sporocyst. This sporocyst infects a snail host following accidental ingestion of the egg. Previous transmission electron microscope studies elucidated the structure of the sporocyst and proposed a mechanism of the injection relying on the structure called the opercular cord, but the data were insufficient to describe certain details. Here, we present ultrastructural data on the egg of Paramonostomum , clarifying the nature of the injection apparatus and providing the missing details of the in-egg mother sporocyst structure. We found the opercular cord to be part of the eggshell associated with the vitelline membrane. We also elucidated the intertwining connection between the germ cells and the sporocyst’s tegument and explored ‘nuage’ granules present in the cytoplasm of the germ cells, providing evidence for identification of these cells as the germ ones. We discuss our findings in the context of transition of miracidia to a passive strategy of snail infection. Graphical abstract

Background Monogenea (Platyhelminthes, Neodermata) are the most species-rich class within the Neodermata superclass of primarily fish parasites. Despite their economic and ecological importance, monogenean research tends to focus on their morphological, phylogenetic, and population characteristics, while comprehensive omics analyses aimed at describing functionally important molecules are few and far between. We present a molecular characterisation of monogenean representative Eudiplozoon nipponicum , an obligate haematophagous parasite infecting the gills of the common carp. We report its nuclear and mitochondrial genomes, present a functional annotation of protein molecules relevant to the molecular and biochemical aspect of physiological processes involved in interactions with the fish hosts, and re-examinate the taxonomic position of Eudiplozoon species within the Diplozoidae family. Results We have generated 50.81 Gbp of raw sequencing data (Illumina and Oxford Nanopore reads), bioinformatically processed, and de novo assembled them into a genome draft 0.94 Gbp long, consisting of 21,044 contigs (N50 = 87 kbp). The final assembly represents 57% of the estimated total genome size (~ 1.64 Gbp), whereby repetitive and low-complexity regions account for ~ 64% of the assembled length. In total, 36,626 predicted genes encode 33,031 proteins and homology-based annotation of protein-coding genes (PCGs) and proteins characterises 14,785 (44.76%) molecules. We have detected significant representation of functional proteins and known molecular functions. The numbers of peptidases and inhibitors (579 proteins), characterised GO terms (16,016 unique assigned GO terms), and identified KEGG Orthology (4,315 proteins) acting in 378 KEGG pathways demonstrate the variety of mechanisms by which the parasite interacts with hosts on a macromolecular level (immunomodulation, feeding, and development). Comparison between the newly assembled E. nipponicum mitochondrial genome (length of 17,038 bp) and other diplozoid monogeneans confirms the existence of two distinct Eudiplozoon species infecting different fish hosts: Cyprinus carpio and Carassius spp. Conclusions Although the amount of sequencing data and characterised molecules of monogenean parasites has recently increased, a better insight into their molecular biology is needed. The E. nipponicum nuclear genome presented here, currently the largest described genome of any monogenean parasite, represents a milestone in the study of monogeneans and their molecules but further omics research is needed to understand these parasites’ biological nature.

Recent studies on microRNA (miRNA) evolution focused mainly on the comparison of miRNA complements between animal clades. However, evolution of miRNAs within such groups is poorly explored despite the availability of comparable data that in some cases lack only a few key taxa. For flatworms (Platyhelminthes), miRNA complements are available for some free-living flatworms and all major parasitic lineages, except for the Monogenea. We present the miRNA complement of the monogenean flatworm Gyrodactylus salaris that facilitates a comprehensive analysis of miRNA evolution in Platyhelminthes. Using the newly designed bioinformatics pipeline miRCandRef, the miRNA complement was disentangled from next-generation sequencing of small RNAs and genomic DNA without a priori genome assembly. It consists of 39 miRNA hairpin loci of conserved miRNA families, and 22 novel miRNAs. A comparison with the miRNA complements of Schmidtea mediterranea (Turbellaria), Schistosoma japonicum (Trematoda), and Echinococcus granulosus (Cestoda) reveals a substantial loss of conserved bilaterian, protostomian, and lophotrochozoan miRNAs. Eight of the 46 expected conserved miRNAs were lost in all flatworms, 16 in Neodermata and 24 conserved miRNAs could not be detected in the cestode and the trematode. Such a gradual loss of miRNAs has not been reported before for other animal phyla. Currently, little is known about miRNAs in Platyhelminthes, and for the majority of the lost miRNAs there is no prediction of function. As suggested earlier they might be related to morphological simplifications. The presence and absence of 153 conserved miRNAs was compared for platyhelminths and 32 other metazoan taxa. Phylogenetic analyses support the monophyly of Platyhelminthes (Turbellaria + Neodermata [Monogenea {Trematoda + Cestoda}]).

Dactylogyrids are flatworms of ecological and economic significance, parasitizing fish worldwide. In recent years, there has been a surge in the description of Neotropical dactylogyrids, particularly those infecting siluriform fishes. While these studies have contributed to the organization of some genera and refined species boundaries through integrative taxonomy, certain groups within the family, such as Demidospermus , remain taxonomically unstable. This study focuses on Demidospermus , aiming to reclassify species of uncertain status into appropriate genera and establish a morphological framework to support future evolutionary analyses and taxonomic revisions within the Demidospermus -like species group. Supported by morphological phylogenetic analysis, we propose the new genera Rhabdolachosus n. gen., Martorellius n. gen., Magnanchistrius n. gen., and Sicohencotyle n. gen., along with the resurrection of Omothecium Kritsky, Thatcher & Boeger, 1987, and Paramphocleithrium Suriano & Incorvaia, 1995. Additionally, two new species are described: Sicohencotyle antoniomaiai n. gen. n. sp. and Ameloblastella sakulocirra n. sp. Also, Demidospermus centromochi Mendoza-Franco & Scholz, 2009 is classified as sedis mutabilis , while D. annulus Marcotegui & Martorelli, 2011, D. brevicirrus Mendoza-Palmero et al. , 2012, D. cornicinus Kritsky & Gutierrez, 1998, D. idolus Kritsky & Gutierrez, 1998, D. armostus Kritsky & Gutierrez, 1998, D. mortenthaleri Mendoza-Palmero et al. , 2012, D. osteomystax Tavernari et al. , 2010, D. tocantinensis Cohen et al. , 2020, D. doncellae Morey et al. , 2024, D. bifurcatus Justo, Martins & Cohen, 2024, D. juruaensis Justo, Martins & Cohen, 2024, and D. takemotoi Justo, Martins & Cohen, 2024 are considered incertae sedis . Lastly, Urocleidoides amazonensis Mizelle & Kritsky, 1969 remains classified as incertae sedis . Les Dactylogyridae sont des vers plats d’importance écologique et économique, parasitant les poissons du monde entier. Ces dernières années, on a assisté à une forte augmentation de la description de Dactylogyridae néotropicaux, en particulier ceux qui infectent les poissons siluriformes. Si ces études ont contribué à l’organisation de certains genres et à l’affinement des frontières entre espèces grâce à une taxonomie intégrative, certains groupes de la famille, comme Demidospermus , demeurent taxonomiquement instables. Cette étude se concentre sur Demidospermus et vise à reclasser les espèces au statut incertain dans des genres appropriés et à établir un cadre morphologique pour étayer les futures analyses évolutives et révisions taxonomiques au sein du groupe d’espèces apparentées à Demidospermus . En nous appuyant sur une analyse phylogénétique morphologique, nous proposons les nouveaux genres Rhabdolachosus n. gen., Martorellius n. gen., Magnanchistrius n. gen. et Sicohencotyle n. gen., ainsi que la résurrection d’ Omothecium Kritsky, Thatcher & Boeger, 1987 et de Paramphocleithrium Suriano & Incorvaia, 1995. De plus, deux nouvelles espèces sont décrites : Sicohencotyle antoniomaiai n. gen. n. sp. et Ameloblastella sakulocirra n. sp. Demidospermus centromochi Mendoza-Franco & Scholz, 2009 est classé comme sedis mutabilis , tandis que D. annulus Marcotegui & Martorelli, 2011, D. brevicirrus Mendoza-Palmero et al. , 2012, D. cornicinus Kritsky & Gutierrez, 1998, D. idolus Kritsky & Gutierrez, 1998, D. armostus Kritsky & Gutierrez, 1998, D. mortenthaleri Mendoza-Palmero et al. , 2012, D. osteomystax Tavernari et al. , 2010, D. tocantinensis Cohen et al. , 2020, D. doncellae Morey et al. , 2024, D. bifurcatus Justo, Martins & Cohen, 2024, D. juruaensis Justo, Martins & Cohen, 2024 et D. takemotoi Justo, Martins & Cohen, 2024, sont considérés comme incertae sedis . Urocleidoides amazonensis Mizelle & Kritsky, 1969 reste classé comme incertae sedis .

Developmental ultrastructure of late embryos and cotylocidium larval morphogenesis of Rohdella amazonica, an aspidogastrean parasite of fish, were studied to reveal the functional aspects of larvigenesis within the egg as well as phylogenetically relevant characteristics of the embryos and larvae in this basal trematode group. Gravid worms were removed from the intestine of naturally infected banded puffer fish Colomesus psittacus, collected from the Bay of Marajó, Paracauari River (Pará, Brazil) and processed by standard methods of transmission electron microscopy (TEM) and cytochemistry. During late cleavage and rearrangement of the blastomeres, the vitelline syncytium that plays a role in eggshell formation and nutrient provision to the embryo completes its apoptotic degeneration as the embryonic mass grows substantially. Early larval morphogenesis involves cellular positioning that defines the anteroposterior polarity of the differentiating larva. Progressing through larvigenesis, the anterior end forms a muscular oral sucker surrounding the mouth, which leads inward into the pharynx and expanding digestive cavity. At the posterior end, a large disc forms as a precursor to the eventual ventral disc. The fully formed cotylocidium, still within the eggshell, is flexed ventrally, bringing the 2 poles into near juxtaposition. The neodermatan tegument with outwardly projecting small microvilli becomes fully formed, as myocytons, a protonephridial system, and 2 glandular regions occupy the body's interior. The ultrastructural features described here are very similar to those reported for Aspidogaster limacoides from fish and somewhat similar to those reported for Cotylogaster occidentalis from molluscs, but differ from the more diverse larvae of neodermatan taxa that have been studied more extensively.

Background Paratetraonchoides inermis (Monogenea: Tetraonchoididae) is a flatworm parasitising the gills of uranoscopid fishes. Its morphological characteristics are ambiguous, and molecular data have never been used to study its phylogenetic relationships, which makes its taxonomic classification controversial. Also, several decades of unsuccessful attempts to resolve the relationships within the Monogenea present a strong indication that morphological datasets may not be robust enough to be used to infer evolutionary histories. As the use of molecular data is currently severely limited by their scarcity, we have sequenced and characterized the complete mitochondrial (mt) genome of P. inermis . To investigate its phylogenetic position, we performed phylogenetic analyses using Bayesian inference and maximum likelihood approaches using concatenated amino acid sequences of all 12 protein-coding genes on a dataset containing all available monogenean mt genomes. Results The circular mt genome of P. inermis (14,654 bp) contains the standard 36 genes: 22 tRNAs, two rRNAs, 12 protein-encoding genes (PCGs; Atp8 is missing) and a major non-coding region (mNCR). All genes are transcribed from the same strand. The A + T content of the whole genome (82.6%), as well as its elements, is the highest reported among the monogeneans thus far. Three tRNA-like cloverleaf structures were found in mNCR. Several results of the phylogenomic analysis are in disagreement with previously proposed relationships: instead of being closely related to the Gyrodactylidea, Tetraonchidea exhibit a phylogenetic affinity with the Dactylogyridea + Capsalidea clade; and the order Capsalidea is neither basal within the subclass Monopisthocotylea, nor groups with the Gyrodactylidea, but instead forms a sister clade with the Dactylogyridea. The mt genome of P. inermis exhibits a unique gene order, with an extensive reorganization of tRNAs. Monogenea exhibit exceptional gene order plasticity within the Neodermata. Conclusions This study shows that gene order within monopisthocotylid mt genomes is evolving at uneven rates, which creates misleading evolutionary signals. Furthermore, our results indicate that all previous attempts to resolve the evolutionary history of the Monogenea may have produced at least partially erroneous relationships. This further corroborates the necessity to generate more molecular data for this group of parasitic animals.

Background The flatworms (Lophotrochozoa: Platyhelminthes) are one of the major phyla of invertebrates but their interrelationships are still not well understood including unravelling the most closely related taxon of the Neodermata, which includes exclusively obligate parasites of all main groups of vertebrates with some 60,000 estimated species. Recent phylogenomic studies indicate that the freshwater ‘microturbellarian’ Bothrioplana semperi may be the closest ancestor to the Neodermata, but this hypothesis receives little morphological support. Therefore, additional morphological and ultrastructural characters that might help understand interrelations within the Neodermata are needed. Methods Ultrastructure of the excretory ducts of representatives of the most basal parasitic flatworms (Neodermata), namely monocotylid (Monopisthocotylea) and chimaericolid (Polyopisthocotylea) monogeneans, aspidogastreans (Trematoda), as well as gyrocotylidean and amphilinidean tapeworms (Cestoda), were studied using transmission electron microscopy (TEM). Results The present study revealed the same pattern of the cytoarchitecture of excretory ducts in all studied species of the basal neodermatans. This pattern is characterised by the presence of septate junctions between the adjacent epithelial cells and lateral ciliary flames along different levels of the excretory ducts. Additionally, a new character was observed in the protonephridial terminal cell of Gyrocotyle urna , namely a septate junction between terminal and adjacent duct cells at the level of the distal extremity of the flame tuft. In Amphilina foliacea , a new type of protonephridial cell with multiple flame bulbs and unique character of its weir, which consists of a single row of the ribs, is described. A remarkable difference has been observed between the structure of the luminal surface of the excretory ducts of the studied basal neodermatan groups and B. semperi . Conclusions The present study does not provide ultrastructural support for a close relationship between the Neodermata and B. semperi .