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Taxonomy of the order Bunyavirales: update 2019
2019
In February 2019, following the annual taxon ratification vote, the order Bunyavirales was amended by creation of two new families, four new subfamilies, 11 new genera and 77 new species, merging of two species, and deletion of one species. This article presents the updated taxonomy of the order Bunyavirales now accepted by the International Committee on Taxonomy of Viruses (ICTV).
Journal Article
2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
2020
In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. At the genus rank, 20 new genera were added, two were deleted, one was moved, and three were renamed. At the species rank, 160 species were added, four were deleted, ten were moved and renamed, and 30 species were renamed. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.
Journal Article
Taxonomy of the order Mononegavirales: update 2019
2019
In February 2019, following the annual taxon ratification vote, the order Mononegavirales was amended by the addition of four new subfamilies and 12 new genera and the creation of 28 novel species. This article presents the updated taxonomy of the order Mononegavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).
Journal Article
Taxonomy of the order Mononegavirales: second update 2018
2019
In October 2018, the order Mononegavirales was amended by the establishment of three new families and three new genera, abolishment of two genera, and creation of 28 novel species. This article presents the updated taxonomy of the order Mononegavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).
Journal Article
Characteristics and distribution of Listeria spp., including Listeria species newly described since 2009
by
Orsi, Renato H.
,
Wiedmann, Martin
in
Biological Evolution
,
Biomedical and Life Sciences
,
Biotechnology
2016
The genus
Listeria
is currently comprised of 17 species, including 9
Listeria
species newly described since 2009. Genomic and phenotypic data clearly define a distinct group of six species (
Listeria
sensu strictu) that share common phenotypic characteristics (e.g., ability to grow at low temperature, flagellar motility); this group includes the pathogen
Listeria monocytogenes
. The other 11 species (
Listeria
sensu lato) represent three distinct monophyletic groups, which may warrant recognition as separate genera. These three proposed genera do not contain pathogens, are non-motile (except for
Listeria grayi
), are able to reduce nitrate (except for
Listeria floridensis
), and are negative for the Voges-Proskauer test (except for
L. grayi
). Unlike all other
Listeria
species, species in the proposed new genus
Mesolisteria
are not able to grow below 7 °C. While most new
Listeria
species have only been identified in a few countries, the availability of molecular tools for rapid characterization of putative
Listeria
isolates will likely lead to future identification of isolates representing these new species from different sources. Identification of
Listeria
sensu lato isolates has not only allowed for a better understanding of the evolution of
Listeria
and virulence characteristics in
Listeria
but also has practical implications as detection of
Listeria
species is often used by the food industry as a marker to detect conditions that allow for presence, growth, and persistence of
L. monocytogenes
. This review will provide a comprehensive critical summary of our current understanding of the characteristics and distribution of the new
Listeria
species with a focus on
Listeria
sensu lato.
Journal Article
Resurrection and emendation of the Hypoxylaceae, recognised from a multigene phylogeny of the Xylariales
by
Peršoh, Derek
,
Wendt, Lucile
,
Stadler, Marc
in
Daldinia
,
Deoxyribonucleic acid
,
DNA-directed RNA polymerase
2018
A multigene phylogeny was constructed, including a significant number of representative species of the main lineages in the Xylariaceae and four DNA loci the internal transcribed spacer region (ITS), the large subunit (LSU) of the nuclear rDNA, the second largest subunit of the RNA polymerase II (RPB2), and beta-tubulin (TUB2). Specimens were selected based on more than a decade of intensive morphological and chemotaxonomic work, and cautious taxon sampling was performed to cover the major lineages of the Xylariaceae; however, with emphasis on hypoxyloid species. The comprehensive phylogenetic analysis revealed a clear-cut segregation of the Xylariaceae into several major clades, which was well in accordance with previously established morphological and chemotaxonomic concepts. One of these clades contained Annulohypoxylon, Hypoxylon, Daldinia, and other related genera that have stromatal pigments and a nodulisporium-like anamorph. They are accommodated in the family Hypoxylaceae, which is resurrected and emended. Representatives of genera with a nodulisporium-like anamorph and bipartite stromata, lacking stromatal pigments (i.e. Biscogniauxia, Camillea, and Obolarina) appeared in a clade basal to the xylarioid taxa. As they clustered with Graphostroma platystomum, they are accommodated in the Graphostromataceae. The new genus Jackrogersella with J. multiformis as type species is segregated from Annulohypoxylon. The genus Pyrenopolyporus is resurrected for Hypoxylon polyporus and allied species. The genus Daldinia and its allies Entonaema, Rhopalostroma, Ruwenzoria, and Thamnomyces appeared in two separate subclades, which may warrant further splitting of Daldinia in the future, and even Hypoxylon was divided in several clades. However, more species of these genera need to be studied before a conclusive taxonomic rearrangement can be envisaged. Epitypes were designated for several important species in which living cultures and molecular data are available, in order to stabilise the taxonomy of the Xylariales.
Journal Article
Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018
by
Jansen van Vuren, P
,
Gonzalez, J P J
,
Stenglein, M D
in
Animals
,
Arenaviridae
,
Arenaviridae - classification
2018
In 2018, the family Arenaviridae was expanded by inclusion of 1 new genus and 5 novel species. At the same time, the recently established order Bunyavirales was expanded by 3 species. This article presents the updated taxonomy of the family Arenaviridae and the order Bunyavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV) and summarizes additional taxonomic proposals that may affect the order in the near future.
Journal Article
Family Genomoviridae: 2021 taxonomy update
2021
The family Genomoviridae (phylum Cressdnaviricota, class Repensiviricetes, order Geplafuvirales) includes viruses with circular single-stranded DNA genomes encoding two proteins, the capsid protein and the rolling-circle replication initiation protein. The genomes of the vast majority of members in this family have been sequenced directly from diverse environmental or animal- and plant-associated samples, but two genomoviruses have been identified infecting fungi. Since the last taxonomic update of the Genomoviridae, a number of new members of this family have been sequenced. Here, we report on the most recent taxonomic update, including the creation of one new genus, Gemytripvirus, and classification of ~420 new genomoviruses into 164 new species. We also announce the adoption of the “Genus + freeform epithet” binomial system for the naming of all 236 officially recognized species in the family Genomoviridae. The updated taxonomy presented in this article has been accepted by the International Committee on Taxonomy of Viruses (ICTV).
Journal Article
Taxonomy of the order Bunyavirales: second update 2018
by
Stenglein, Mark D
,
Marklewitz, Marco
,
Hans-Peter Mühlbach
in
Bunyavirales
,
Genera
,
New families
2019
In October 2018, the order Bunyavirales was amended by inclusion of the family Arenaviridae, abolishment of three families, creation of three new families, 19 new genera, and 14 new species, and renaming of three genera and 22 species. This article presents the updated taxonomy of the order Bunyavirales as now accepted by the International Committee on Taxonomy of Viruses (ICTV).
Journal Article
Capulavirus and Grablovirus: two new genera in the family Geminiviridae
2017
Geminiviruses are plant-infecting single-stranded DNA viruses that occur in most parts of the world. Currently, there are seven genera within the family
Geminiviridae
(
Becurtovirus
,
Begomovirus
,
Curtovirus
,
Eragrovirus
,
Mastrevirus
,
Topocuvirus
and
Turncurtovirus
). The rate of discovery of new geminiviruses has increased significantly over the last decade as a result of new molecular tools and approaches (rolling-circle amplification and deep sequencing) that allow for high-throughput workflows. Here, we report the establishment of two new genera:
Capulavirus
, with four new species (
Alfalfa leaf curl virus
,
Euphorbia caput-medusae latent virus
,
French bean severe leaf curl virus
and
Plantago lanceolata latent virus
), and
Grablovirus
, with one new species (
Grapevine red blotch virus
). The aphid species
Aphis craccivora
has been shown to be a vector for
Alfalfa leaf curl virus
, and the treehopper species
Spissistilus festinus
is the likely vector of
Grapevine red blotch virus
. In addition, two highly divergent groups of viruses found infecting citrus and mulberry plants have been assigned to the new species
Citrus chlorotic dwarf associated virus
and
Mulberry mosaic dwarf associated virus,
respectively. These species have been left unassigned to a genus by the ICTV because their particle morphology and insect vectors are unknown.
Journal Article