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Qiita: rapid, web-enabled microbiome meta-analysis
Multi-omic insights into microbiome function and composition typically advance one study at a time. However, in order for relationships across studies to be fully understood, data must be aggregated into meta-analyses. This makes it possible to generate new hypotheses by finding features that are reproducible across biospecimens and data layers. Qiita dramatically accelerates such integration tasks in a web-based microbiome-comparison platform, which we demonstrate with Human Microbiome Project and Integrative Human Microbiome Project (iHMP) data.
Journal Article
Reproducible econometrics using R
This text is designed to facilitate reproducibility in econometrics. It does so by using open source software (R) and recently developed tools (R Markdown and bookdown) that allow the reader to engage in reproducible research. Illustrative examples are provided throughout, and a range of topics are covered. Assignments, exams, slides, and a solution manual are available for instructors.
Book
Ultimate Git and GitHub for Modern Software Development
Ultimate Git and GitHub for Modern Software Development is a comprehensive guide that empowers developers to harness the full potential of Git and GitHub for efficient version control and seamless collaboration. This book takes you on a journey through the fundamentals of Git, exploring its commands, branching strategies, and conflict resolution techniques. It then delves into the world of GitHub, teaching you how to create repositories, collaborate with teams, and contribute to open-source projects.Whether you're a beginner or an experienced developer, this handbook equips you with the skills and knowledge to streamline your development workflow, ensure code integrity, and foster a collaborative coding environment. With clear explanations, real-world examples, and best practices, you will learn to leverage the power of these tools to enhance your coding experience and elevate your projects to new heights.
eBook
Kubernetes for Developers
Kubernetes is a powerful container orchestration platform that can significantly improve the way developers build, test, and deploy applications. In 'Kubernetes for Developers,' you'll learn essential Kubernetes concepts and master practical skills to containerize, run, and manage your code efficiently.What this Book will help me doBuild and encapsulate your applications within containers using Docker.Debug and deploy containerized applications in a Kubernetes environment.Implement and manage configurations for your applications through Kubernetes declarative tools.Monitor and optimize services to ensure efficiency and reliability in Kubernetes.Leverage continuous integration and troubleshooting techniques in Kubernetes workflows.Author(s)Joseph Heck is a veteran software engineer and cloud technology expert with decades of industry experience. With a passion for teaching, he is known for his approachable and pragmatic style in explaining technical concepts. Through this book, he shares hands-on lessons about Kubernetes tailored to the developer's perspective, making sophisticated orchestration topics accessible.Who is it for?This book is tailored for software developers, including full-stack and back-end engineers, who are looking to enhance their skills with Kubernetes. Especially focused on those utilizing Node.js and Python, its practical examples address common development and deployment tasks. If you aim to integrate Kubernetes into your development workflow or bring consistency to your deployment processes, this guide is for you.
eBook
Ultimate Monorepo and Bazel for Building Apps at Scale
\"Ultimate Scalable Monorepo Apps with Bazel\" is the go-to guide for developers and engineers looking to maximize the potential of Bazel within a monorepo setup. It explores the intricacies of building large-scale applications, contrasting the monorepo approach with polyrepo setups and highlighting benefits like streamlined dependency management and improved collaboration. Through practical examples and real-world case studies, you'll learn how to harness Bazel's features for faster build times and consistent results across environments. Structured to cover all aspects of Bazel and monorepo development, from initial setup to advanced topics like custom rule creation and dependency management, this book provides actionable insights to enhance your development workflow. This guide equips you with the knowledge and skills to efficiently manage large codebases and contribute to more robust, scalable, and maintainable software projects. By the end, readers will be equipped to efficiently manage large codebases, leverage Bazel's capabilities to speed up build and test processes, and ultimately, contribute to more robust, scalable, and maintainable software projects.
eBook
Problem-formulation and problem-solving in self-organized communities: How modes of communication shape project behaviors in the free open-source software community
Research summary: Building on the problem-solving perspective, we study behaviors related to projects and the communication-based antecedents of such behaviors in the free open-source software (FOSS) community. We examine two kinds of problem/project-behaviors: Individuals can set up projects around the formulation of new problems or join existing projects and define and/or work on subproblems within an existing problem. The choice between these two behaviors is influenced by the mode of communication. A communication mode with little a priori structure is the best mode for communicating about new problems (i.e., formulating a problem); empirically, it is associated with project launching behaviors. In contrast, more structured communication fits subproblems better and is related to project joining behaviors. Our hypotheses derive support from data from the FOSS community. Managerial summary: We study how the way in which individuals communicate influence the project-behaviors they engage in. We find that relatively unstructured communication is associated with the setting up new projects, while communication that is structured around an artifact is associated with joining projects. Our findings hold implications for understanding how management may influence project behaviors and problem-solving: Firms that need to concentrate on more incremental problem-solving efforts (e.g., because a sufficient number of attractive problems have already been defined) should create environments in which interaction is undertaken mainly via artifacts. On the other hand, if firms seek to generate new problems (e.g., new strategic opportunities), they should create environments in which open-ended, verbal conversation is relatively more important than artifact-based communication.
Journal Article