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Microbial ecology is the key to understanding the function of soil biota for organic matter cycling after a single amendment of organic waste in semiarid soils. Therefore, in this paper, the long-term effect (17 years) of adding different doses of a solid municipal waste to an arid soil on humus-enzyme complexes, a very stable and long-lasting fraction of soil enzymes, as well as on microbial and plant abundance, was studied. Humic substances were extracted by 0.1 M pH 7 sodium pyrophosphate from soil samples collected in experimental plots amended with different doses of a solid municipal waste (0, 65, 130, 195, and 260 t/ha) 17 years before. The activity of different hydrolases related with the C (β-glucosidase), N (urease), and P (alkaline phosphatase) cycles and with the formation of humic substances (o-diphenol oxidase) were determined in this extract. The density and diversity of plant cover in the plots, as well as the fungal and bacterial biomass (by analyzing phopholipid fatty acids) were also determined. In general, the amended plots showed greater humic substance-related enzymatic activity than the unamended plots. This activity increased with the dose but only up to a certain level, above which it leveled off or even diminished. Plant diversity and cover density followed the same trend. Fungal and bacterial biomass also benefited in a dose-dependent manner. Different signature molecules representing gram+ and gram- bacteria, and those corresponding to monounsaturated and saturated fatty acids showed a similar behavior. The results demonstrate that organic amendment had a noticeable long-term effect on the vegetal development, humic substances-related enzyme activity and on the development of bacteria and fungi in semiarid conditions.

Plant function requires effective mechanisms to regulate water transport at a variety of scales. Here, we develop a new theoretical framework describing plant responses to drying soil, based on the relationship between midday and predawn leaf water potentials. The intercept of the relationship (Λ) characterizes the maximum transpiration rate per unit of hydraulic transport capacity, whereas the slope (σ) measures the relative sensitivity of the transpiration rate and plant hydraulic conductance to declining water availability. This framework was applied to a newly compiled global database of leaf water potentials to estimate the values of Λ and σ for 102 plant species. Our results show that our characterization of drought responses is largely consistent within species, and that the parameters Λ and σ show meaningful associations with climate across species. Parameter σ was ≤1 in most species, indicating a tight coordination between the gas and liquid phases of water transport, in which canopy transpiration tended to decline faster than hydraulic conductance during drought, thus reducing the pressure drop through the plant. The quantitative framework presented here offers a new way of characterizing water transport regulation in plants that can be used to assess their vulnerability to drought under current and future climatic conditions.

Productivity gradients in the boreal forest are largely determined by regional-scale changes in soil conditions, and bacterial communities are likely to respond to these changes. Few studies, however, have examined how variation in specific edaphic properties influences the composition of soil bacterial communities along environmental gradients. We quantified bacterial compositional diversity patterns in ten boreal forest sites of contrasting fertility. Bulk soil (organic and mineral horizons) was sampled from sites representing two extremes of a natural moisture-nutrient gradient and two distinct disturbance types, one barren and the other vegetation-rich. We constructed 16S rRNA gene clone libraries to characterize the bacterial communities under phylogenetic- and species-based frameworks. Using a nucleotide analog to label DNA-synthesizing bacteria, we also assessed the composition of active taxa in disturbed sites. Most sites were dominated by sequences related to the α-Proteobacteria, followed by acidobacterial and betaproteobacterial sequences. Non-parametric multivariate regression indicated that pH, which was lowest in the natural sites, explained 34% and 16% of the variability in community structure as determined by phylogenetic-based (UniFrac distances) and species-based (Jaccard similarities) metrics, respectively. Soil pH was also a significant predictor of richness (Chao1) and diversity (Shannon) measures. Within the natural edaphic gradient, soil moisture accounted for 32% of the variance in phylogenetic (but not species) community structure. In the boreal system we studied, bacterial β-diversity patterns appear to be largely related to “master” variables (e.g., pH, moisture) rather than to observable attributes (e.g., plant cover) leading to regional-scale fertility gradients.

• Efficient water transport from soil to leaves sustains stomatal opening and steady-state photosynthesis. The aboveground portion of this pathway is well-described, yet the roots and their connection with the soil are still poorly understood due to technical limitations. • Here we used a novel rehydration technique to investigate changes in the hydraulic pathway between roots and soil and within the plant body as individual olive plants were subjected to a range of water stresses. • Whole root hydraulic resistance (including the radial pathway from xylem to the soil–root interface) constituted 81% of the whole-plant resistance in unstressed plants, increasing to >95% under a moderate level of water stress. The decline in this whole root hydraulic conductance occurred in parallel with stomatal closure and contributed significantly to the reduction in canopy conductance according to a hydraulic model. • Our results demonstrate that losses in root hydraulic conductance, mainly due to a disconnection from the soil during moderate water stress in olive plants, are profound and sufficient to induce stomatal closure before cavitation occurs. Future studies will determine whether this core regulatory role of root hydraulics exists more generally among diverse plant species.

1. Much attention has been paid to negative effects of alien species on resident communities but studies that quantify community-level effects of a number of invasive plants are scarce. We address this issue by assessing the impact of 13 species invasive in the Czech Republic on a wide range of plant communities. 2. Vegetation in invaded and uninvaded plots with similar site conditions was sampled. All species of vascular plants were recorded, their covers were estimated and used as importance values for calculating the Shannon diversity index H', evenness J and Sørensen index of similarity between invaded and uninvaded vegetation. 3. With the exception of two invasive species, species richness, diversity and evenness were reduced in invaded plots. Species exhibiting the greatest impact reduced species numbers per plot and the total number of species recorded in the communities sampled by almost 90%. A strong reduction of species number at the plot scale resulted in a marked reduction in the total species number at the landscape scale, and in less similarity between invaded and uninvaded vegetation. The decrease in species richness in invaded compared to uninvaded plots is largely driven by the identity of the invading species, whereas the major determinants of the decrease in Shannon diversity and evenness are the cover and height of invading species, and differences between height and cover of invading and dominant native species, independent of species identity. 4. Synthesis. Management decisions based on impact need to distinguish between invasive species, as their effects on diversity and composition of resident vegetation differ largely. Tall invading species capable of forming populations with the cover markedly greater than that of native dominant species exert the most severe effects on species diversity and evenness. Since a strong impact on the community scale is associated with reduction in species diversity at higher scales, invaders with a high impact represent a serious hazard to the landscape.

The emergence of critical zone (CZ) science has provided an integrative platform for investigating plant ecophysiology in the context of landscape evolution, weathering and hydrology. The CZ lies between the top of the vegetation canopy and fresh, chemically unaltered bedrock and plays a pivotal role in sustaining life. We consider what the CZ perspective has recently brought to the study of plant ecophysiology. We specifically highlight novel research demonstrating the importance of the deeper subsurface for plant water and nutrient relations. We also point to knowledge gaps and research opportunities, emphasising, in particular, greater focus on the roles of deep, nonsoil resources and how those resources influence and coevolve with plants as a frontier of plant ecophysiological research.

1. Understorey vegetation comprises the majority of species diversity and contributes greatly to ecosystem functioning in boreal forests. Although patterns of understorey abundance, species diversity and composition associated with forest stand development are well researched, mechanisms driving these patterns remain largely speculative. 2. We sampled fire-origin stands of varying stand ages and overstorey compositions on mesic sites of the boreal forest of Canada and used structural equation modelling (SEM) to link time since fire (stand age), light availability and heterogeneity, substrate heterogeneity and soil nitrogen to understorey vegetation cover and species diversity. 3. The most parsimonious model for total understorey cover showed a positive direct effect of stand age (r = .43) and an indirect effect via mean light level (0.18) and shrub cover (-0.11), with a positive total effect (0.50); the per cent broadleaf canopy had a direct negative effect (-0.22) and an indirect effect via shrub cover (-0.11). The model for total understorey species richness showed an indirect effect of stand age via mean light (0.24), light heterogeneity (0.10) and substrate heterogeneity (0.07), with a positive total effect (0.52); per cent broadleaf canopy had an indirect effect via light heterogeneity (0.09), and substrate heterogeneity (-0.10). Soil nitrogen did not significantly influence either understorey cover or species richness. The models for vascular plants followed similar trends to those for total understorey cover and species richness; however, there was an opposite indirect effect of light heterogeneity for both cover and species richness of non-vascular plants. Shrub cover had positive direct and negative direct and indirect effects on both vascular and non-vascular cover and species richness. 4. Synthesis. Our findings indicate that understorey cover and species diversity are driven by time since disturbance, light availability as influenced by overstorey and shrub layers, but with important additional effects mediated by light and substrate heterogeneity. Non-vascular understorey vegetation is more strongly determined by time since disturbance than vascular vegetation, and negatively affected by broadleaf tree abundance. The overall results highlight the importance of colonization, light availability and heterogeneity, substrate specialization and growth dynamics in determining successional patterns of boreal forest understorey vegetation.

• Foliar functional traits are widely used to characterize leaf and canopy properties that drive ecosystem processes and to infer physiological processes in Earth system models. Imaging spectroscopy provides great potential to map foliar traits to characterize continuous functional variation and diversity, but few studies have demonstrated consistent methods for mapping multiple traits across biomes. • With airborne imaging spectroscopy data and field data from 19 sites, we developed trait models using partial least squares regression, and mapped 26 foliar traits in seven NEON (National Ecological Observatory Network) ecoregions (domains) including temperate and subtropical forests and grasslands of eastern North America. • Model validation accuracy varied among traits (normalized root mean squared error, 9.1– 19.4%; coefficient of determination, 0.28–0.82), with phenolic concentration, leaf mass per area and equivalent water thickness performing best across domains. Across all trait maps, 90% of vegetated pixels had reasonable values for one trait, and 28–81% provided high confidence for multiple traits concurrently. • Maps of 26 traits and their uncertainties for eastern US NEON sites are available for download, and are being expanded to the western United States and tundra/boreal zone. These data enable better understanding of trait variations and relationships over large areas, calibration of ecosystem models, and assessment of continental-scale functional diversity.

• Most ecosystems experience frequent cloud cover resulting in light that is predominantly diffuse rather than direct. Moreover, these cloudy conditions are often accompanied by rain that results in wet leaf surfaces. Despite this, our understanding of photosynthesis is built upon measurements made on dry leaves experiencing direct light. • Using a modified gas exchange setup, we measured the effects of diffuse light and leaf wetting on photosynthesis in canopy species from a tropical montane cloud forest. • We demonstrate significant variation in species-level response to light quality independent of light intensity. Some species demonstrated 100% higher rates of photosynthesis in diffuse light, and others had 15% greater photosynthesis in direct light. Even at lower light intensities, diffuse light photosynthesis was equal to that under direct light conditions. Leaf wetting generally led to decreased photosynthesis, particularly when the leaf surface with stomata became wet; however, there was significant variation across species. • Ultimately, we demonstrate that ecosystem photosynthesis is significantly altered in response to environmental conditions that are ubiquitous. Our results help to explain the observation that net ecosystem exchange can increase in cloudy conditions and can improve the representation of these processes in Earth systems models under projected scenarios of global climate change.

• Plants reduce transpiration to avoid dehydration during drought episodes by stomatal closure and inhibition of canopy growth. Previous studies have suggested that low gibberellin (GA) activity promotes these ‘drought avoidance’ responses. • Using genome editing, molecular, physiological and hormone analyses, we examined if drought regulates GA metabolism in tomato (Solanum lycopersicum) guard cells and leaves, and studied how this affects water loss. • Water deficiency inhibited the expression of the GA biosynthesis genes GA20 oxidase1 (GA20ox1) and GA20ox2 and induced the GA deactivating gene GA2ox7 in guard cells and leaf tissue, resulting in reduced levels of bioactive GAs. These effects were mediated by abscisic acid-dependent and abscisic acid-independent pathways, and by the transcription factor TINY1. The loss of GA2ox7 attenuated stomatal response to water deficiency and during soil dehydration, ga2ox7 plants closed their stomata later, and wilted faster than wild-type (WT) M82 cv. Mutations in GA20ox1 and GA20ox2, had no effect on stomatal closure, but reduced water loss due to the mutants’ smaller canopy areas. • The results suggested that drought-induced GA deactivation in guard cells, contributes to stomatal closure at the early stages of soil dehydration, whereas inhibition of GA synthesis in leaves suppresses canopy growth and restricts transpiration area.