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Cannibalism, the act of eating an individual of the same species, has long intrigued researchers. More than 30 years after publication of reviews on the topic, there appears to be little consensus about the commonness of cannibalism and its ecological and evolutionary importance. Since Smith and Reay (Rev Fish Biol Fish 1:41–64, 1991 . doi: 10.1007/BF00042661 ) reviewed cannibalism in teleost fish, many new studies have been published that address aspects of cannibalism and here we present an updated review. Reports of cannibalism have increased, especially since the 1990s, with many accounts from aquaculture research. Cannibalism has been recorded for 390 teleost species from 104 families, with 150 species accounts based only on captive fish. The number of literature reports of cannibalism is almost equal for marine and freshwater fishes; freshwater families with most reported cases are Percidae, Salmonidae and Esocidae, and marine families are Gobiidae, Gadidae and Merluciidae. Ecological and evolutionary implications of cannibalism are discussed along with perspectives for future research.

Evolutionary history is typically portrayed as a branching phylogenetic tree, yet not all evolution proceeds in a purely bifurcating manner. Introgressive hybridization is one process that results in reticulate evolution. Most known examples of genome-wide introgression occur among closely related species with relatively recent common ancestry; however, we present evidence for ancient hybridization and genome-wide introgression between major stem lineages of darters, a species-rich clade of North American freshwater fishes. Previous attempts to resolve the relationships of darters have been confounded by the uncertain phylogenetic resolution of the lineage Allohistium. In this study, we investigate the phylogenomics of darters, specifically the relationships of Allohistium, through analyses of approximately 30,000 RADseq loci sampled from 112 species. Our phylogenetic inferences are based on traditional approaches in combination with strategies that accommodate reticulate evolution. These analyses result in a novel phylogenetic hypothesis for darters that includes ancient introgression between Allohistium and other two major darter lineages, minimally occurring 20 million years ago. Darters offer a compelling case for the necessity of incorporating phylogenetic networks in reconstructing the evolutionary history of diversification in species-rich lineages. We anticipate that the growing wealth of genomic data for clades of non-model organisms will reveal more examples of ancient hybridization, eventually requiring a re-evaluation of how evolutionary history is visualized and utilized in macroevolutonary investigations.

Abstract Background The Percidae family comprises many fish species of major importance for aquaculture and fisheries. Based on three new chromosome-scale assemblies in Perca fluviatilis , Perca schrenkii , and Sander vitreus along with additional percid fish reference genomes, we provide an evolutionary and comparative genomic analysis of their sex-determination systems. Results We explored the fate of a duplicated anti-Mullerian hormone receptor type-2 gene ( amhr2bY ), previously suggested to be the master sex-determining (MSD) gene in P. flavescens . Phylogenetically related and structurally similar a mhr2 duplicates ( amhr2b ) were found in P. schrenkii and Sander lucioperca , potentially dating this duplication event to their last common ancestor around 19–27 Mya. In P. fluviatilis and S. vitreus , this amhr2b duplicate has been likely lost while it was subject to amplification in S. lucioperca . Analyses of the amhr2b locus in P. schrenkii suggest that this duplication could be also male-specific as it is in P. flavescens . In P. fluviatilis , a relatively small (100 kb) non-recombinant sex-determining region (SDR) was characterized on chromosome 18 using population-genomics approaches. This SDR is characterized by many male-specific single-nucleotide variations (SNVs) and no large duplication/insertion event, suggesting that P. fluviatilis has a male heterogametic sex-determination system (XX/XY), generated by allelic diversification. This SDR contains six annotated genes, including three ( c18h1orf198 , hsdl1 , tbc1d32 ) with higher expression in the testis than in the ovary. Conclusions Together, our results provide a new example of the highly dynamic sex chromosome turnover in teleosts and provide new genomic resources for Percidae, including sex-genotyping tools for all three known Perca species.

Comparative genomic approaches are increasingly being used to study the evolution of reproductive barriers in nonmodel species. Although numerous studies have examined prezygotic isolation in darters (Percidae), investigations into postzygotic barriers have remained rare due to long generation times and a lack of genomic resources. Orangethroat and rainbow darters naturally hybridize and provide a remarkable example of male-driven speciation via character displacement. Backcross hybrids suffer from high mortality, which appears to promote behavioral isolation in sympatry. To investigate the genomic architecture of postzygotic isolation, we used Illumina and PacBio sequencing to generate a chromosome-level, annotated assembly of the orangethroat darter genome and high-density linkage maps for orangethroat and rainbow darters. We also analyzed genome-wide RADseq data from wild-caught adults of both species and laboratory-generated backcrosses to identify genomic regions associated with hybrid incompatibles. Several putative chromosomal translocations and inversions were observed between orangethroat and rainbow darters, suggesting structural rearrangements may underlie postzygotic isolation. We also found evidence of selection against recombinant haplotypes and transmission ratio distortion in backcross hybrid genomes, providing further insight into the genomic architecture of genetic incompatibilities. Notably, regions with high levels of genetic divergence between species were enriched for genes associated with developmental and meiotic processes, providing strong candidates for postzygotic isolating barriers. These findings mark significant contributions to our understanding of the genetic basis of reproductive isolation between species undergoing character displacement. Furthermore, the genomic resources presented here will be instrumental for studying speciation in darters, the most diverse vertebrate group in North America.

Numerous fish species in the Laurentian Great Lakes have been negatively impacted by the establishment of the invasive Round Goby (Neogobius melanostomus). However, limited understanding exists as to how Round Goby has impacted small-bodied native benthic fishes after its secondary invasion into tributaries of the Laurentian Great Lakes. To investigate Round Goby impacts on darter species (family Percidae) in tributary ecosystems, catch per unit area (CPUA) of native and non-native fishes from two riverine ecosystems in Southwestern Ontario (Ausable River, Big Otter Creek) were analyzed. Spatial analyses indicated Round Goby CPUA was highest proximate to the Great Lakes, with a sharp decline in CPUA at sites upstream from each lake (Round Goby CPUA approached zero after 18 and 14 km in the Ausable River and Big Otter Creek, respectively). There was some evidence of a negative relationship between the CPUA of Round Goby and several darter species along the tributary gradients, with moderately negative co-occurrence between Round Goby and Rainbow Darter in the Ausable River and Johnny Darter and Percidae species overall in Big Otter Creek. However, overwhelming evidence of negative associations between Round Goby and all darter species was not found. The negative relationship between the CPUA of Round Goby and some darter species was observed over similar time periods since establishment but greater spatial scales than in previous studies, and therefore has important implications for understanding the ecological impacts of Round Goby in tributary ecosystems.

Invasive species are a major threat to ecosystem structure and function. For example, Bythotrephes cederströmii (Bythotrephes hereafter) invasions have significantly reduced native zooplankton density and biomass, resulting in competitive interactions with zooplanktivorous fishes. Young of year (YOY) walleye (Sander vitreus) are initially zooplanktivorous and have recently been shown to display reduced growth in Bythotrephes-invaded lakes. Here, we combined a bioenergetics model for larval walleye with changes in the zooplankton community following Bythotrephes invasion and predicted reduced larval walleye growth in the presence of Bythotrephes, supporting field observations. The model predicted greater negative impacts on larval walleye growth in oligotrophic compared with mesotrophic lakes, though reduced growth was only significant under oligotrophic conditions. Under Bythotrephes invasion, net energy available to growth over the simulated period was often observed to be negative (indicating mass loss). These combined results from the model suggest that Bythotrephes invasion could potentially lead to walleye recruitment failure, especially in low nutrient environments. This result was insensitive to differences in annual mean water temperatures ranging from 18.5 to 23.5 °C. As YOY growth, survival, and recruitment are ultimately linked to adult abundance and sustainability of managed stocks, our results highlight the potential impacts of Bythotrephes on the sustainability of walleye populations in boreal lakes.

Based on previous molecular phylogenetic analyses, Bothriocestus n. gen. is erected to accommodate bothriocephalid tapeworms that have an elongate scolex, a well-developed apical disc, and a narrow neck region, parasitize freshwater fishes in the Holarctic, and were previously placed in the polyphyletic genus Bothriocephalus Rudolphi, 1808 (Cestoda: Bothriocephalidea). Bothriocestus claviceps (Goeze, 1782) n. comb., a parasite of eels (Anguilla spp.) in the Holarctic region, is designated as the type species. Another species of the new genus, Bothriocestus cuspidatus (Cooper, 1917) (syn. Bothriocephalus cuspidatusCooper, 1917) is redescribed from type and voucher specimens, and new material from the type host, the walleye, Sander vitreus (Mitchill, 1818) (Perciformes: Percidae), in Manitoba and Ontario (where the type locality is located) (Canada) and in New York state and Wisconsin. Bothriocestus cuspidatus of S. vitreus is characterized primarily by the possession of a narrow, long strobila (total length up to 18 cm) composed of distinctly craspedote, trapezoidal proglottids, with primary, secondary, and tertiary proglottids differing in size, and by an arrow-shaped (=cuspidatus) scolex that is distinctly broader than the first proglottids, widest near the base in lateral view and gradually becoming broader toward the anterior end in dorsoventral view. A \"dwarf\" form of B. cuspidatus (total length of 9-27 mm) from Johnny darter, Etheostoma nigrum Rafinesque, 1820, and tessellated darter, Etheostoma olmstedi Storer, 1842 (both Percidae: Etheostominae), is also characterized morphologically in the present paper.

Detection of aquatic species is imperfect, especially if the species is rare and exhibits spatial and temporal variability. Many fish species require a number of sampling trips before detection is positive. And yet, information on species persistence is critical for effective conservation efforts. New forensic genetic techniques, such as environmental DNA (eDNA), have been developed and successfully used to validate the presence of exotic aquatic species in new areas. We compared detection of a federally listed, threatened, migratory fish species the Slackwater darter (Etheostoma boschungi); using eDNA to concomitantly collected field collections. Detection probabilities for this species are variable, but consistently low in recent collections. Our results indicated that detection using eDNA was vastly more effective than traditional sampling at confirming the presence of the Slackwater darter. Positive detection at non-breeding sites was half of the detection rate at breeding sites, most likely to the greater area available in non-breeding streams. These data suggest that eDNA is an effective tool for quickly evaluating a relatively large number of sites for the presence of rare aquatic species.

The influence of environment and phylogeny on morphological characteristics of organisms is well documented. However, little is known about how these factors influence scale shape in fishes, a feature which may be important for drag reduction. We evaluated the impact of both on scale shape variation in the primarily benthic, riverine darter clade (Percidae: Etheostomatinae) of fishes. We predicted that darters with close phylogenetic relationships and/or shared ecologies would have more similar scale shapes, but this relationship would be mediated by use of the substrate boundary layer. We used geometric morphometrics and seven homologous landmarks for 92 species of darters representing all genera and 37 clades within genera to measure scale shape. Phylogenetic relationships and ecological variables describing habitat, spawning mode, and maximum body size of each species were summarized from the literature. We used ordinations to examine scale shape variation among phylogenetic and ecological groups. We conducted Phylogenetic Generalized Least Squares analyses to test for relationships between scale shape and ecological characteristics. Scale shape variation occurred within and among darter clades, and was significantly related to phylogeny. However, we found divergent scale shapes between close relatives and similar scale shapes between distantly related species. After accounting for phylogenetic signal, size and water column position were related to scale shape. Extra-large, hyperbenthic species had longer, narrower scales that may decrease laminar drag. Sub-benthic darters had scales that were narrower at the insertion, and with enlarged ctenial margins that may facilitate burying. Among benthic darters, size was significantly related to scale shape though a lack of clustering among many taxonomic and ecological groups may indicate that boundary layer use has reduced selective pressures from drag. Our results are consistent with others that have found both environment and phylogeny influence Teleost fish morphology.

Background Previous studies in teleost have demonstrated the adaptive strategy to maintain hepatic lipid homeostasis within certain limit. The excess of fat-intake could induce abnormal lipid deposition in liver but not adipose tissue. However, the molecular mechanism between the impaired lipid homeostasis and the aggravated lipid deposition in liver has not been elucidated well in fish. Methods Four isonitrogenous diets with different fat levels (2, 7, 12 and 17%) were formulated, named L2, L7, L12 and L17 respectively, and fed Chinese perch (44.50 ± 0.25 g) to apparent satiation for five weeks. Growth index, triglyceride concentrations and expression of genes involved in lipid metabolism were measured. Results The maximal growth performance and food intake were observed in L12 group. The lipid content in liver and serum were comparable in L2, L7 and L12 groups, while they were increased significantly in L17 group. Histology analysis also demonstrated that mass lipid droplets emerged in hepatocyte and then induced hepatic steatosis in L17 group. Compared to L2 group, the lipolytic genes related to fatty acids (FAs) transport ( lpl & hl ) and FAs β-oxidation ( cpt1 & cs ) were increased in L7 and L12 group. Relative mRNA levels of the gluconeogenesis ( pc , pepck & g6pase ) were also increased, in contrast, the lipogenic genes ( srebp1 , accα & fas ) were decreased. Compared to L12 group, L17 group had higher mRNA levels of the FAs transport and the lipogenesis. But the lipolytic genes related to FAs β-oxidation were steady and the mRNA levels of gluconeogenesis were down-regulated instead. Conclusions Within certain limit, the increase of dietary fat in L7 and L12 group was propitious to reduce the consumption of protein and improve growth performance in Chinese perch. It was due to the homeostasis of hepatic triglyceride (TG) pool and serum glucose through promoting the FAs β-oxidation and gluconeogenesis respectively. Both the increase of lipogenesis and the absence of FAs β-oxidation in L17 group could trigger the esterification of FAs, indeed, the inhibition of gluconeogenesis could also aggravate triglyceride accumulation in liver and induce hepatic steatosis.