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"Pinus - anatomy "
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Water potential control of turgor‐driven tracheid enlargement in Scots pine at its xeric distribution edge
by
Pacific Northwest Research Station ; United States Department of Agriculture
,
INIA-CIFOR
,
Meinzer, Frederick
in
Availability
,
Computer simulation
,
Correlation analysis
2020
The extent to which water availability can be used to predict the enlargement and final dimensions of xylem conduits remains an open issue. We reconstructed the time course of tracheid enlargement in Pinus sylvestris trees in central Spain by repeated measurements of tracheid diameter on microcores sampled weekly during a 2 yr period. We analyzed the role of water availability in these dynamics empirically through time-series correlation analysis and mechanistically by building a model that simulates daily tracheid enlargement rate and duration based on Lockhart's equation and water potential as the sole input. Tracheid enlargement followed a sigmoid-like time course, which varied intra- and interannually. Our empirical analysis showed that final tracheid diameter was strongly related to water availability during tracheid enlargement. The mechanistic model was calibrated and successfully validated (R-2 = 0.92) against the observed tracheid enlargement time course. The model was also able to reproduce the seasonal variations of tracheid enlargement rate, duration and final diameter (R-2 = 0.84-0.99). Our results support the hypothesis that tracheid enlargement and final dimensions can be modeled based on the direct effect of water potential on turgor-driven cell expansion. We argue that such a mechanism is consistent with other reported patterns of tracheid dimension variation.
Journal Article
Combined impact of semantic segmentation and quantitative structure modelling of Southern pine trees using terrestrial laser scanning
2025
Southern pine forests play a key role in the ecological function and economic vitality of the southeastern United States. High-resolution terrestrial laser scanning (TLS) has become an indispensable tool for advancing tree structural research and monitoring. A critical challenge in this field is the accurate segmentation of leaf and wood components, which directly impacts the reliability of Quantitative Structure Models (QSMs). Segmentation techniques have progressed, but most existing methods are tailored for broadleaf species, with limited exploration for coniferous species such as southern pines. Addressing this gap, our study evaluates the performance of multiple segmentation algorithms on TLS data from southern pines, providing valuable insights into improving structural analysis and supporting more precise and efficient forest research and monitoring methodologies. We collected TLS data from longleaf pine (
Pinus palustris
Mill.) and loblolly pine (
Pinus taeda
L.) trees in Florida, USA, and compared the performance of four segmentation algorithms: TLSep, Graph, DBSCAN, and KPConv to separate leaf and wood. We found that KPConv was the most accurate method of segmenting wood and leaf points, with an overall accuracy (OA) of 98% and F1 score of 98% for loblolly pine and 95% and 94%, respectively, for longleaf pine. Although KPConv requires a substantial initial investment for training, its inference time is fast, making it a strong candidate for high-accuracy large-scale applications. These results led to highly reliable QSMs across trunk, branch, and total volume estimates. In contrast, DBSCAN, while slightly less accurate (OA of 92% for loblolly pine and 90% for longleaf pine), does not require training data and offers a favorable trade-off between performance and efficiency. These findings highlight the importance of selecting segmentation algorithms based on specific research goals, balancing accuracy and computational feasibility in forest structural modeling.
Journal Article
Fennoscandian tree-ring anatomy shows a warmer modern than medieval climate
2023
Earth system models and various climate proxy sources indicate global warming is unprecedented during at least the Common Era
1
. However, tree-ring proxies often estimate temperatures during the Medieval Climate Anomaly (950–1250
ce
) that are similar to, or exceed, those recorded for the past century
2
,
3
, in contrast to simulation experiments at regional scales
4
. This not only calls into question the reliability of models and proxies but also contributes to uncertainty in future climate projections
5
. Here we show that the current climate of the Fennoscandian Peninsula is substantially warmer than that of the medieval period. This highlights the dominant role of anthropogenic forcing in climate warming even at the regional scale, thereby reconciling inconsistencies between reconstructions and model simulations. We used an annually resolved 1,170-year-long tree-ring record that relies exclusively on tracheid anatomical measurements from
Pinus sylvestris
trees, providing high-fidelity measurements of instrumental temperature variability during the warm season. We therefore call for the construction of more such millennia-long records to further improve our understanding and reduce uncertainties around historical and future climate change at inter-regional and eventually global scales.
Annually resolved Fennoscandian tree-ring anatomy records show that the climate of the current industrial era is substantially warmer than that of the medieval period.
Journal Article
Noninvasive Measurement of Vulnerability to Drought-Induced Embolism by X-Ray Microtomography
by
Jansen, Steven
,
Badel, Eric
,
Burlett, Regis
in
Droughts
,
ECOPHYSIOLOGY AND SUSTAINABILITY
,
Environmental Sciences
2016
Hydraulic failure induced by xylem embolism is one of the primary mechanisms of plant dieback during drought. However, many of the methods used to evaluate the vulnerability of different species to drought-induced embolism are indirect and invasive, increasing the possibility that measurement artifacts may occur. Here, we utilize x-ray computed microtomography (microCT) to directly visualize embolism formation in the xylem of living, intact plants with contrasting wood anatomy (Quercus robur, Populus tremula × Populus alba, and Pinus pinaster). These observations were compared with widely used centrifuge techniques that require destructive sampling. MicroCT imaging provided detailed spatial information regarding the dimensions and functional status of xylem conduits during dehydration. Vulnerability curves based on microCT observations of intact plants closely matched curves based on the centrifuge technique for species with short vessels (P. tremula × P. alba) or tracheids (P. pinaster). For ring porous Q. robur, the centrifuge technique significantly overestimated vulnerability to embolism, indicating that caution should be used when applying this technique to species with long vessels. These findings confirm that microCT can be used to assess the vulnerability to embolism on intact plants by direct visualization.
Journal Article
Accelerating the domestication of trees using genomic selection: accuracy of prediction models across ages and environments
2012
Genomic selection is increasingly considered vital to accelerate genetic improvement. However, it is unknown how accurate genomic selection prediction models remain when used across environments and ages. This knowledge is critical for breeders to apply this strategy in genetic improvement. Here, we evaluated the utility of genomic selection in a Pinus taeda population of c. 800 individuals clonally replicated and grown on four sites, and genotyped for 4825 single‐nucleotide polymorphism (SNP) markers. Prediction models were estimated for diameter and height at multiple ages using genomic random regression best linear unbiased predictor (BLUP). Accuracies of prediction models ranged from 0.65 to 0.75 for diameter, and 0.63 to 0.74 for height. The selection efficiency per unit time was estimated as 53–112% higher using genomic selection compared with phenotypic selection, assuming a reduction of 50% in the breeding cycle. Accuracies remained high across environments as long as they were used within the same breeding zone. However, models generated at early ages did not perform well to predict phenotypes at age 6 yr. These results demonstrate the feasibility and remarkable gain that can be achieved by incorporating genomic selection in breeding programs, as long as models are used at the relevant selection age and within the breeding zone in which they were estimated.
Journal Article
Widespread Increase of Tree Mortality Rates in the Western United States
by
Smith, Jeremy M
,
Taylor, Alan H
,
Stephenson, Nathan L
in
Abies - anatomy & histology
,
Abies - growth & development
,
altitude
2009
Persistent changes in tree mortality rates can alter forest structure, composition, and ecosystem services such as carbon sequestration. Our analyses of longitudinal data from unmanaged old forests in the western United States showed that background (noncatastrophic) mortality rates have increased rapidly in recent decades, with doubling periods ranging from 17 to 29 years among regions. Increases were also pervasive across elevations, tree sizes, dominant genera, and past fire histories. Forest density and basal area declined slightly, which suggests that increasing mortality was not caused by endogenous increases in competition. Because mortality increased in small trees, the overall increase in mortality rates cannot be attributed solely to aging of large trees. Regional warming and consequent increases in water deficits are likely contributors to the increases in tree mortality rates.
Journal Article
Resin duct characteristics associated with tree resistance to bark beetles across lodgepole and limber pines
by
Mitton, Jeffry B.
,
Ferrenberg, Scott
,
Kane, Jeffrey M.
in
Agricultural pests
,
Analysis
,
anatomy & histology
2014
Bark beetles have recently killed billions of trees, yet conifer defenses are formidable and some trees resist attack. A primary anti-insect defense of pines is oleoresin from a system of resin ducts throughout the tree. Resin defense traits are heritable, and evidence suggests that resin duct characteristics are associated with resistance to insects. However, comparisons of resin ducts in trees killed by bark beetles to trees that resisted attack are unavailable. We compared vertical resin duct characteristics (number, density, and size) and growth rates from trees that were “resistant” (survived mass attack) versus “susceptible” (killed by attack) to bark beetles in lodgepole (Pinus contorta) and limber (Pinus flexilis) pines. Resistant trees of both species had significantly more resin ducts in recent growth than susceptible trees. Discriminant analysis (DA) correctly categorized 84 % of lodgepole and 92 % of limber pines as susceptible/resistant based on combinations of resin duct and growth characteristics from recent 5- through 20-year growth intervals. DA models using measures from only the most recent 5 years of growth correctly categorized 72 and 81 % of lodgepole and limber pines, respectively. Comparing resistant to susceptible trees independent of species identity led to the correct categorization of 82 % of trees based on factors from 5- to 20-year intervals, and 73 % of trees using only resin duct counts from the most recent 5 years. We conclude that resin duct characteristics can be used to assess tree resistance to bark beetles across pine species, and offer a metric for management to enhance pest resistance.
Journal Article
Sample selection bias due to omitting short trees for tree height estimation in forest inventories: A case study on Pinus koraiensis plantations in South Korea
2025
This study investigates the impact of omitting short tree data on tree height estimation in conventional forest inventories, focusing on Pinus koraiensis plantations in South Korea. Twenty height-diameter models were tested on both datasets: the complete data and the short tree-free data. The models were divided into Group 1 (with two model parameters) and Group 2 (with three model parameters) to examine whether the omission of short tree data affects model performance based on the number of parameters. Results demonstrated that excluding short tree data led to significant overestimation of tree height in small diameter ranges, with Group 2 models showing greater sensitivity to the omission. This omission also caused substantial variations in model rankings between the Full and short tree-free datasets, leading to specification errors and suboptimal model selection. Despite the small sample size difference, half of the Group 2 models produced non-significant parameter estimates when fitted to the short tree-free data, underscoring the influence of sample distribution on statistical outcomes. While most models maintained consistent height-diameter relationships during extrapolation, some generated unrealistic results, including negative or excessively large tree height estimates and inverse relationships in small diameter ranges. These findings emphasize the necessity of including short trees in forest inventory samples to mitigate biases in tree height estimation, which is critical for accurate biomass and carbon stock assessments.
Journal Article
Masting in whitebark pine (Pinus albicaulis) depletes stored nutrients
by
Delzon, Sylvain, S
,
Université Laval [Québec] (ULaval)
,
Hopping, Kelly
in
Branches
,
cone production
,
Cones
2012
In masting trees, synchronized, heavy reproductive events are thought to deplete stored resources and to impose a replenishment period before subsequent masting. However, direct evidence of resource depletion in wild, masting trees is very rare. Here, we examined the timing and magnitude (local vs individual-level) of stored nutrient depletion after a heavy mast event in Pinus albicaulis. In 2005, the mast year, we compared seasonal changes in leaf and sapwood nitrogen (N) and phosphorus (P) concentrations and leaf photosynthetic rates in cone-bearing branches, branches that never produced cones, and branches with experimentally removed cones. We also compared nutrient concentrations in cone branches and branches that had never had cones between 2005 and 2006, and measured tree ring width and new shoot growth during 2005. During the mast year, N or P depletion occurred only in tissue fractions of reproductive branches, where photosynthetic rates were reduced. However, by the end of the following year, nutrients were depleted in all branches, indicating individual-level resource depletion. New shoot and radial growth were not affected by masting. We provide direct evidence that mast events in wild trees deplete stored nutrients. Our results highlight the importance of evaluating reproductive costs over time and at the individual level.
Journal Article
Linking reliance on deep soil water to resource economy strategies and abundance among coexisting understorey shrub species in subtropical pine plantations
2020
• Strategies for deep soil water acquisition (WAdeep) are critical to a species’ adaptation to drought. However, it is unknown how WAdeep determines the abundance and resource economy strategies of understorey shrub species.
• With data from 13 understorey shrub species in subtropical coniferous plantations, we investigated associations between the magnitude of WAdeep, the seasonal plasticity of WAdeep, midday leaf water potential (Ψmd), species abundance and resource economic traits across organs.
• Higher capacity for WAdeep was associated with higher intrinsic water use efficiency, but was not necessary for maintaining higher Ψmd in the dry season nor was it an ubiquitous trait possessed by the most common shrub species. Species with higher seasonal plasticity of WAdeep had lower wood density, indicating that fast species had higher plasticity in deep soil resource acquisition. However, the magnitude and plasticity of WAdeep were not related to shallow fine root economy traits, suggesting independent dimensions of soil resource acquisition between deep and shallow soil.
• Our results provide new insights into the mechanisms through which the magnitude and plasticity of WAdeep interact with shallow soil and aboveground resource acquisition traits to integrate the whole-plant economic spectrum and, thus, community assembly processes.
Journal Article