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"Population biology"
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Troublesome science : the misuse of genetics and genomics in understanding race
It is well established that all human beings today, wherever they live, belong to one single species. Yet even many people who claim to abhor racism take for granted that human \"races\" have a biological reality. From pharmacological researchers to the U.S. government, the dubious tradition of classifying people by race lives on. In Troublesome Science, Rob DeSalle and Ian Tattersall provide a lucid and compelling presentation of how the tools of modern biological science have been misused to sustain the belief in the biological basis of racial classification. Troublesome Science argues that taxonomy, the scientific classification of organisms, provides a cure for such misbegotten mischaracterizations. DeSalle and Tattersall explain how taxonomists do their job, in particular the genomic and morphological techniques they use to identify a species and to understand and organize the relationships among different species and the variants within them. They detail the use of genetic data to trace human origins and look at how scientists have attempted to recognize discrete populations within Homo sapiens. DeSalle and Tattersall demonstrate conclusively that these techniques, when applied correctly to the study of human variety, fail to find genuine differences, striking a blow against pseudoscientific chicanery. While the diversity that exists within our species is a real phenomenon, it nevertheless defeats any systematic attempt to recognize discrete units within it. The stark lines that humans insist on drawing between their own groups and others are nothing but a mixture of imagination and ideology.
Book
Bayesian Population Analysis Using WinBUGS
Bayesian statistics has exploded into biology and its sub-disciplines, such as ecology, over the past decade.The free software program WinBUGS, and its open-source sister OpenBugs, is currently the only flexible and general-purpose program available with which the average ecologist can conduct standard and non-standard Bayesian statistics.-.
eBook
Population-scale sequencing reveals genetic differentiation due to local adaptation in Atlantic herring
The Atlantic herring (Clupea harengus), one of the most abundant marine fishes in the world, has historically been a critical food source in Northern Europe. It is one of the few marine species that can reproduce throughout the brackish salinity gradient of the Baltic Sea. Previous studies based on few genetic markers have revealed a conspicuous lack of genetic differentiation between geographic regions, consistent with huge population sizes and minute genetic drift. Here, we present a cost-effective genome-wide study in a species that lacks a genome sequence. We first assembled a muscle transcriptome and then aligned genomic reads to the transcripts, creating an “exome assembly,” capturing both exons and flanking sequences. We then resequenced pools of fish from a wide geographic range, including the Northeast Atlantic, as well as different regions in the Baltic Sea, aligned the reads to the exome assembly, and identified 440,817 SNPs. The great majority of SNPs showed no appreciable differences in allele frequency among populations; however, several thousand SNPs showed striking differences, some approaching fixation for different alleles. The contrast between low genetic differentiation at most loci and striking differences at others implies that the latter category primarily reflects natural selection. A simulation study confirmed that the distribution of the fixation index F ST deviated significantly from expectation for selectively neutral loci. This study provides insights concerning the population structure of an important marine fish and establishes the Atlantic herring as a model for population genetic studies of adaptation and natural selection.
Journal Article
From invaders to residents: The golden jackal
The golden jackal has rapidly expanded across Europe in recent decades and was one of the first to reappear in Hungary. Using hunting bag data from the National Game Management Database from 1995 to 2021, we examined the spatial expansion of the species and its population dynamics. Our findings reveal an exponential increase in the golden jackal population since the mid-1990s, with an average annual growth rate of 40% in the hunting bag and an occupancy of 86% of the country. The average speed of the range expansion was 536.9 km.sup.2 year.sup.-1 until 2007 and increased to an average of 5,289.1 km.sup.2 year.sup.-1 during the second part of the expansion process. The density of shot golden jackals also shows an increasing trend with a substantial presence of outliers, indicating that nearly 10% of the hunting bag demonstrates exceptionally high numbers, particularly in southwestern Hungary. The spread originated in the southwest and extended towards the northeast and northwest. However, the increase of the hunting bag slowed down and the expansion rate has decreased in the previous two years, leading us to anticipate that the golden jackal population will stabilize soon, as the expansion has reached its maximum in Hungary. This indicates that from the initial settlement to the stabilization of the population, the time span can be two to three decades.
Journal Article
First Life Table of Synthesiomyia nudiseta
To better understand the population dynamics and dispersal ability of insect species, it is often helpful to derive a life table containing fundamental demographic data. The aim of this study was to determine a life table for the predatory necrophagous species Synthesiomyia nudiseta (van der Wulp, 1883) on a pig liver diet and under controlled laboratory conditions (29.5 [+ or -] 2. 5[degrees]C, RH 50 [+ or -] 15%, and a photoperiod of 12:12). This species has medical and veterinary importance and its distribution extends in tropical and subtropical areas and now it has been established in the southwestern of Europe. The mean adult longevity was 36. 18 [+ or -] 2. 06 d and the net reproduction rate, R, was 27.65 offspring/female, the mean generation time, T, was 22. 09 d, the finite rate of increase, [lambda], was 1. 16 [d.sup.-1], and the intrinsic rate of increase, r, was 0. 15 [d.sup.-1]. These results indicate that S. nudiseta cannot be considered an r-strategist as the most common synanthropic necrophagous blowflies due to its predatory behavior; however, its invasive and colonist abilities are discussed. This is the first life table study of this species from Palearctic region to analyze the effect of its dispersal ability.
Journal Article
Effect of Parental Photoperiod on Body Size and Developmental Time of Aedes aegypti
Many insects use photoperiod as a signal to anticipate upcoming unfavorable conditions. Photoperiod sensitivity may be a relevant factor in Aedes (Stegomyia) aegypti (L.) populations at the cool margins of the species' range, where winter conditions have a strong effect on population dynamics. In this study, we evaluated the effect of parental photoperiod on preimaginal survival and developmental time, and on wing length for the first generation of Ae. aegypti from a temperate region (Buenos Aires City, Argentina). Our experiment started with eggs from parents exposed to short-day (SD; 10:14 [L:D]) or long-day (LD; 14:10 [L:D]) photoperiods during their entire life span. Eggs were stored under the same photoperiod (SD or LD) as their parents for 91 d, until immersion. After hatching, larvae were reared until adult emergence in thermal baths at one of two constant temperatures (17 or 23[degrees]C), at a photoperiod of 12:12 (L:D) h and fed ad libitum. Survival from larva I to adult emergence was not affected either by parental photoperiod or rearing temperature. At a rearing temperature of 23[degrees]C, female offspring from the SD parental photoperiod developed faster and had shorter wings compared with those from the LD parental photoperiod. No effect of parental photoperiod was observed on female offspring reared at 17[degrees]C. In male offspring, parental photoperiod had no effect on developmental time and wing length, independently of the rearing temperature. Results indicate that the parental photoperiod may affect some offspring traits. This effect may be a characteristic of Ae. aegypti populations in temperate regions to deal with the winter conditions.
Journal Article