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One of the most important diseases of eucalyptus plantations is caused by the rust fungus Puccinia psidii. While the genetic basis of rust resistance has been addressed recently, little is known about the physiological aspects of Eucalyptus–P. psidii interaction. In order to fill this gap, we undertook a study investigating the effects of P. psidii infection on photosynthetic processes of two E. urophylla clones with contrasting resistance to the pathogen. Our results show that gas exchange and chlorophyll a fluorescence parameters were virtually unaffected in the resistant clone. In the susceptible clone, photosynthetic rates were chiefly constrained by biochemical limitations to carbon fixation. Photosynthesis was impaired only in symptomatic tissues since the reductions in photosynthetic rates were proportional to the diseased leaf area. Rust infection provoked chronic photoinhibition to photosynthesis in the susceptible clone. Overall, differences in the ability for light capture, use and dissipation may play a significant role in explaining the clonal differences in Eucalyptus in response to P. psidii infection. To our knowledge, this is the first report of the effect of rust infection on gas exchange and chlorophyll a fluorescence parameters in Eucalyptus.

The aim of this study was to determine the evolutionary time line for rust fungi and date key speciation events using a molecular clock. Evidence is provided that supports a contemporary view for a recent origin of rust fungi, with a common ancestor on a flowering plant. Divergence times for > 20 genera of rust fungi were studied with Bayesian evolutionary analyses. A relaxed molecular clock was applied to ribosomal and mitochondrial genes, calibrated against estimated divergence times for the hosts of rust fungi, such as Acacia (Fabaceae), angiosperms and the cupressophytes. Results showed that rust fungi shared a most recent common ancestor with a mean age between 113 and 115 million yr. This dates rust fungi to the Cretaceous period, which is much younger than previous estimations. Host jumps, whether taxonomically large or between host genera in the same family, most probably shaped the diversity of rust genera. Likewise, species diversified by host shifts (through coevolution) or via subsequent host jumps. This is in contrast to strict coevolution with their hosts. Puccinia psidii was recovered in Sphaerophragmiaceae, a family distinct from Raveneliaceae, which were regarded as confamilial in previous studies.

Although genome-wide association studies (GWAS) have provided valuable insights into the decoding of the relationships between sequence variation and complex phenotypes, they have explained little heritability. Regional heritability mapping (RHM) provides heritability estimates for genomic segments containing both common and rare allelic effects that individually contribute too little variance to be detected by GWAS. We carried out GWAS and RHM for seven growth, wood and disease resistance traits in a breeding population of 768 Eucalyptus hybrid trees using EuCHIP60K. Total genomic heritabilities accounted for large proportions (64–89%) of pedigree-based trait heritabilities, providing additional evidence that complex traits in eucalypts are controlled by many sequence variants across the frequency spectrum, each with small contributions to the phenotypic variance. RHM detected 26 quantitative trait loci (QTLs) encompassing 2191 single nucleotide polymorphisms (SNPs), whereas GWAS detected 13 single SNP–trait associations. RHM and GWAS QTLs individually explained 5–15% and 4–6% of the genomic heritability, respectively. RHM was superior to GWAS in capturing larger proportions of genomic heritability. Equated to previously mapped QTLs, our results highlighted genomic regions for further examination towards gene discovery. RHM-QTLs bearing a combination of common and rare variants could be useful enhancements to incorporate prior knowledge of the underlying genetic architecture in genomic prediction models.

The invasive rust Puccinia psidii (myrtle rust) was detected in Australia in 2010 and is now established along the east coast from southern New South Wales to far north Queensland. Prior to reaching Australia, severe damage from P. psidii was mainly restricted to exotic eucalypt plantations in South America, guava plantations in Brazil, allspice plantations in Jamaica, and exotic Myrtaceous tree species in the USA; the only previous record of widespread damage in native environments is of endangered Eugenia koolauensis in Hawai’i. Using two rainforest tree species as indicators of the impact of P. psidii, we report for the first time severe damage to endemic Myrtaceae in native forests in Australia, after only 4 years’ exposure to P. psidii. A 3-year disease exclusion trial in a natural stand of Rhodamnia rubescens unequivocally showed that repeated, severe infection leads to gradual crown loss and ultimately tree mortality; trees were killed in less than 4 years. Significant (p < 0.001) correlations were found between both incidence (r = 0.36) and severity (r = 0.38) of P. psidii and subsequent crown loss (crown transparency). This provided supporting evidence to conclude a causal association between P. psidii and crown loss and tree mortality in our field assessments of R. rubescens and Rhodomyrtus psidioides across their native range. Assessments revealed high levels of damage by P. psidii to immature leaves, shoots and tree crowns—averaging 76 % (R. rubescens) and 95 % (R. psidioides) crown transparency—as well as tree mortality. For R. psidioides, we saw exceptionally high levels of tree mortality, with over half the trees surveyed dead and 40 % of stands with greater than 50 % tree mortality, including two stands where all trees were dead. Tree mortality was less prevalent for R. rubescens, with only 12 % of trees surveyed dead and two sites with greater than 50 % mortality. Any alternative causal agents for this tree mortality have been discounted. The ecological implications of this are unclear, but our work clearly illustrates the potential for P. psidii to negatively affect Australia’s biodiversity.

The exotic rust fungus Puccinia psidii sensu lato was first detected in Australia in April 2010. This study aimed to determine the host-range potential of this accession of the rust by testing its pathogenicity on plants of 122 taxa, representative of the 15 tribes of the subfamily Myrtoideae in the family Myrtaceae. Each taxon was tested in two separate trials (unless indicated otherwise) that comprised up to five replicates per taxon and six replicates of a positive control (Syzygium jambos). No visible symptoms were observed on the following four taxa in either trial: Eucalyptus grandis×camaldulensis, E. moluccana, Lophostemon confertus and Sannantha angusta. Only small chlorotic or necrotic flecks without any uredinia (rust fruiting bodies) were observed on inoculated leaves of seven other taxa (Acca sellowiana, Corymbia calophylla 'Rosea', Lophostemon suaveolens, Psidium cattleyanum, P. guajava 'Hawaiian' and 'Indian', Syzygium unipunctatum). Fully-developed uredinia were observed on all replicates across both trials of 28 taxa from 8 tribes belonging to the following 17 genera: Agonis, Austromyrtus, Beaufortia, Callistemon, Calothamnus, Chamelaucium, Darwinia, Eucalyptus, Gossia, Kunzea, Leptospermum, Melaleuca, Metrosideros, Syzygium, Thryptomene, Tristania, Verticordia. In contrast, the remaining 83 taxa inoculated, including the majority of Corymbia and Eucalyptus species, developed a broad range of symptoms, often across the full spectrum, from fully-developed uredinia to no visible symptoms. These results were encouraging as they indicate that some levels of genetic resistance to the rust possibly exist in these taxa. Overall, our results indicated no apparent association between the presence or absence of disease symptoms and the phylogenetic relatedness of taxa. It is most likely that the majority of the thousands of Myrtaceae species found in Australia have the potential to become infected to some degree by the rust, although this wide host range may not be fully realized in the field.

Puccinia psidii sensu lato (s.l.) is the causal agent of eucalyptus and guava rust, but it also attacks a wide range of plant species from the myrtle family, resulting in a significant genetic and physiological variability among populations accessed from different hosts. The uredospores are crucial to P. psidii dissemination in the field. Although they are important for the fungal pathogenesis, their molecular characterization has been poorly studied. In this work, we report the first in-depth proteomic analysis of P. psidii s.l. uredospores from two contrasting populations: guava fruits (PpGuava) and eucalyptus leaves (PpEucalyptus). NanoUPLC-MSE was used to generate peptide spectra that were matched to the UniProt Puccinia genera sequences (UniProt database) resulting in the first proteomic analysis of the phytopathogenic fungus P. psidii. Three hundred and fourty proteins were detected and quantified using Label free proteomics. A significant number of unique proteins were found for each sample, others were significantly more or less abundant, according to the fungal populations. In PpGuava population, many proteins correlated with fungal virulence, such as malate dehydrogenase, proteossomes subunits, enolases and others were increased. On the other hand, PpEucalyptus proteins involved in biogenesis, protein folding and translocation were increased, supporting the physiological variability of the fungal populations according to their protein reservoirs and specific host interaction strategies.

In 2010, the invasive pathogen Austropuccinia psidii was detected in Australia, posing a threat to vegetation communities containing susceptible Myrtaceae species. A large-scale field experiment tested the direct and indirect effects resulting from the infection of two highly susceptible rainforest species, Rhodamnia rubescens and Rhodomyrtus psidioides. Community-level impacts were assessed at three sites per study species in New South Wales, Australia. For R. rubescens, 20 plots containing an adult tree each were established per site. Each plot was designated one of four treatments: fungicide spray of the understorey only, canopy only, both or none (control). For R. psidioides, 10 plots containing only seedlings were established per site, with each plot designated to one of two treatments: fungicide spray or no spray (control). Richness and abundance of co-occurring understorey species were assessed every 4 months for a 24-month period, and changes in canopy transparency were assessed for R. rubescens. The R. rubescens control canopy plots were found to have greater canopy transparency (direct effect) which caused a reduction in the understorey richness and total abundance (indirect effects). For treated canopy plots, richness was similar but total abundance increased in fungicide treated understorey plots, suggesting a direct effect of the pathogen on understorey species. Understorey plots treated with fungicide had significantly greater abundance of R. rubescens and R. psidioides seedlings compared to control plots. This study shows that in a short time period, infection by an invasive fungal pathogen has resulted in changes in species richness and abundance in Australian rainforest communities.

Invasive plants can respond to injury from natural enemies by altering the quantity and distribution of biomass among woody materials, foliage, fruits, and seeds. Melaleuca, an Australian tree that has naturalized in south Florida, has been reunited with two natural enemies: a weevil introduced during 1997 and a psyllid introduced during 2002. We hypothesized that herbivory from these and other adventive organisms (lobate-lac scale and a leaf-rust fungus) would alter the distribution and allocation of biomass on melaleuca trees. This hypothesis was tested by temporally assessing changes in aboveground biomass components in conjunction with the presence of natural enemies and their damage to melaleuca trees. Melaleuca trees of different diameters representing the range (1 to 33 cm diam at 1.3 m height) within study sites were harvested during 1996, prior to the introduction of herbivorous insects, and again during 2003 after extensive tree damage had become apparent. Aboveground biomass, partitioned into several components (woody structures, foliage, fruits, and seeds), was quantified both times in Broward, Miami–Dade, and Palm Beach county sites located in south Florida. The two harvests within each site were performed in closely-matched melaleuca stands, and changes in biomass components were compared between years. Total biomass and woody portions decreased in Broward, whereas they increased in Miami–Dade and Palm Beach sites. Reductions in foliage (on all trees) and seed biomass (among seed-bearing trees) were greatest at Broward and least at Miami–Dade County site. Hence, overall seed and foliage production was severely reduced at the Broward site where both the natural enemy incidence and damage were more abundant compared to other sites. We therefore attribute the reduced foliar biomass and reproductive capability of melaleuca trees to infestations of natural enemies. These findings highlight the role that natural enemies can play in the long-term management of invasive tree species.

Austropuccinia psidii is a plant fungus native to South and Central America which causes myrtle rust disease, affecting the growth and reproduction of species in the Myrtaceae family. Austropuccinia psidii was first detected in Australia 8 years ago in New South Wales. Since then it has spread rapidly along the east coast, and to date is known to infect more than 375 native Myrtaceae species in Australia. Despite this, its rapid spread is not well documented and the potential threat to additional Myrtaceae species remains unknown, with no systematic surveillance or monitoring program in Australia. In order to better understand the extent of A. psidii geographic distribution and impacts on Australian landscapes, a survey was sent to national park, botanical garden, local council, nursery and forestry agency employees in all states and territories where the disease is known to be present. More than 500 surveys were sent, and 254 responses were received. The survey confirms that A. psidii is widespread in New South Wales and Queensland urban environments as well as in native vegetation communities. Four new host species were confirmed, as well as four new local government areas in two different states reporting A. psidii infection. The disease severity was classified as medium to high for most host species, with especially negative impacts for Rhodamnia rubescens and Rhodomyrtus psidioides. These survey results provide up-to-date information on the geographical distribution, host species and impacts of A. psidii, which will assist in making management decisions relating to this pathogen across Australia.

Brazil is the largest red-fleshed guava producer in the world. Cultivar ‘Paluma’, which is cultivated by most of guava growers in Brazil, is susceptible to myrtle rust ( Austropuccinia psidii ). In recent years, the area with other guava cultivars has been expanded in order to diversify the production. ‘Suprema’ red-fleshed guava cultivar is a promising genotype, because of its high yield. However, there is a lack of information about its interaction with A. psidii and the damage caused by the disease in that cultivar. The objectives of this study were to characterise the monocyclic components of myrtle rust and photosynthetic damage caused by this disease in Suprema. Young leaves of Suprema and Paluma potted plants were inoculated with A. psidii  urediniospore suspensions and kept under favourable conditions for disease development. The A. psidii pre-penetration process and disease monocyclic components were evaluated in both cultivars. Hydrogen peroxide (H 2 O 2 ) production was evaluated in Suprema. Additionally, young leaves of Suprema were inoculated with varying concentrations of A. psidii inoculum, and net photosynthesis was correlated with rust severity. The percentages of urediniospore germination and appressoria formation of A. psidii were similar in both cultivars and rust resistance in Suprema was unrelated to H 2 O 2 production shortly after pathogen infection. However, lesion density, lesion size, number of urediniospores lesion −1 , and disease severity were significantly lower in Suprema compared to Paluma. A severe reduction in net photosynthesis was observed in Suprema inoculated plants. Although the reduction on photosynthesis is proportionally higher than the diseased area in Suprema, it is not expected guava rust will be a problem as inoculum production is very low in Suprema leaves. Suprema features high partial rust resistance and is an excellent option for guava producers.