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Gentoo penguins (Pygoscelis papua) are found across the Southern Ocean with a circumpolar distribution and notable genetic and morphological variation across their geographic range. Whether this geographic variation represents species‐level diversity has yet to be investigated in an integrative taxonomic framework. Here, we show that four distinct populations of gentoo penguins (Iles Kerguelen, Falkland Islands, South Georgia, and South Shetlands/Western Antarctic Peninsula) are genetically and morphologically distinct from one another. We present here a revised taxonomic treatment including formal nomenclatural changes. We suggest the designation of four species of gentoo penguin: P. papua in the Falkland Islands, P. ellsworthi in the South Shetland Islands/Western Antarctic Peninsula, P. taeniata in Iles Kerguelen, and a new gentoo species P. poncetii, described herein, in South Georgia. These findings of cryptic diversity add to many other such findings across the avian tree of life in recent years. Our results further highlight the importance of reassessing species boundaries as methodological advances are made, particularly for taxa of conservation concern. We recommend reassessment by the IUCN of each species, particularly P. taeniata and P. poncetii, which both show evidence of decline. Gentoo penguins (Pygoscelis papua) are found across the Southern Ocean with a circumpolar distribution and notable genetic and morphological variation across their geographic range. Here, we show that four distinct populations of gentoo penguins (Iles Kerguelen, Falkland Islands, South Georgia, and South Shetlands/Western Antarctic Peninsula) are genetically and morphologically distinct from one another. We suggest the designation of four species of gentoo penguin: P. ellsworthi in the South Shetland Islands/Western Antarctic Peninsula, P. taeniata in Iles Kerguelen, and P. poncetii in South Georgia with the Falkland Islands retaining P. papua.

Climate change is a major threat to global biodiversity. Antarctic ecosystems are no exception. Investigating past species responses to climatic events can distinguish natural from anthropogenic impacts. Climate change produces ‘winners’, species that benefit from these events and ‘losers’, species that decline or become extinct. Using molecular techniques, we assess the demographic history and population structure of Pygoscelis penguins in the Scotia Arc related to climate warming after the Last Glacial Maximum (LGM). All three pygoscelid penguins responded positively to post-LGM warming by expanding from glacial refugia, with those breeding at higher latitudes expanding most. Northern ( Pygoscelis papua papua ) and Southern ( Pygoscelis papua ellsworthii ) gentoo sub-species likely diverged during the LGM. Comparing historical responses with the literature on current trends, we see Southern gentoo penguins are responding to current warming as they did during post-LGM warming, expanding their range southwards. Conversely, Adélie and chinstrap penguins are experiencing a ‘reversal of fortunes’ as they are now declining in the Antarctic Peninsula, the opposite of their response to post-LGM warming. This suggests current climate warming has decoupled historic population responses in the Antarctic Peninsula, favoring generalist gentoo penguins as climate change ‘winners’, while Adélie and chinstrap penguins have become climate change ‘losers’.

Background Energy landscapes provide an approach to the mechanistic basis of spatial ecology and decision-making in animals. This is based on the quantification of the variation in the energy costs of movements through a given environment, as well as how these costs vary in time and for different animal populations. Organisms as diverse as fish, mammals, and birds will move in areas of the energy landscape that result in minimised costs and maximised energy gain. Recently, energy landscapes have been used to link energy gain and variable energy costs of foraging to breeding success, revealing their potential use for understanding demographic changes. Methods Using GPS-temperature-depth and tri-axial accelerometer loggers, stable isotope and molecular analyses of the diet, and leucocyte counts, we studied the response of gentoo ( Pygoscelis papua ) and chinstrap ( Pygoscelis antarcticus ) penguins to different energy landscapes and resources. We compared species and gentoo penguin populations with contrasting population trends. Results Between populations, gentoo penguins from Livingston Island (Antarctica), a site with positive population trends, foraged in energy landscape sectors that implied lower foraging costs per energy gained compared with those around New Island (Falkland/Malvinas Islands; sub-Antarctic), a breeding site with fluctuating energy costs of foraging, breeding success and populations. Between species, chinstrap penguins foraged in sectors of the energy landscape with lower foraging costs per bottom time, a proxy for energy gain. They also showed lower physiological stress, as revealed by leucocyte counts, and higher breeding success than gentoo penguins. In terms of diet, we found a flexible foraging ecology in gentoo penguins but a narrow foraging niche for chinstraps. Conclusions The lower foraging costs incurred by the gentoo penguins from Livingston, may favour a higher breeding success that would explain the species’ positive population trend in the Antarctic Peninsula. The lower foraging costs in chinstrap penguins may also explain their higher breeding success, compared to gentoos from Antarctica but not their negative population trend. Altogether, our results suggest a link between energy landscapes and breeding success mediated by the physiological condition.

Homeostasis of gut microbiota is critical for growth and health of animals. However, the impact of reproduction on penguin gut microbiota remains unclear, despite penguins being sentinel species of the marine environment. Through high-throughput sequencing of 16S rRNA gene, we examined changes in gut microbiota structure and function in captive female Gentoo penguins during the reproductive process, and also assessed the community stability and assembly mechanism. We found that gut microbiota alpha diversity decreased significantly in captive female Gentoo penguins after egg laying. Based on the comparison of gut microbiota compositions and their predicted functions, the Fusobacteria and pathogenicity increased after laying eggs, while Bacteroidetes and carbohydrate metabolism decreased. After laying eggs, the diversity of the gut microbiota decreased continuously until chicks left the nest. The co-occurrence network analysis revealed that the gut microbiota of captive female Gentoo penguins was less complex and more stable after egg laying. On the basis of the null model, deterministic processes drove the gut microbiota assembly in gravid Gentoo penguins, whereas reproductive processes elevated the contribution of stochastic processes. Our study provides insights into the reproductive physiology and gut microbiota assembly in penguins.

In this study, it was aimed to present the results of microbiological, cytological, histopathological, and immunohistochemical analyses of ocular samples from an Antarctic (Ardley Island, King George Island) Gentoo penguin chick (Pygoscelis papua) with a pyogranulomatous lesion in the right eye. Samples were taken from both the healthy left eye and the lesion in the right eye. Conventional culture methods and phenotypic and molecular tests were used for bacterial isolation and identification, respectively. None of the isolates could be identified phenotypically. As a result, four of the five isolates obtained from the right eye were considered to belong to putative novel bacterial species and taxa as their similarity to GenBank data was below 98.75%. The isolates were considered to be Pasteurellaceae bacterium, Corynebacterium ciconiae, Cardiobacteriaceae bacterium, Actinomyces sp., and Dermabacteraceae bacterium. The only isolate from the left eye was identified as Psychrobacter pygoscelis. The cytological analysis demonstrated cell infiltrates composed mostly of degenerate heterophils, reactive macrophages, plasma cells, lymphocytes, and eosinophils. Based on histopathological findings, the lesion was defined as a typical pyogranulomatous lesion. Immunohistochemistry demonstrated that the granuloma was positive for TNF-α, IL-4, MMP-9, IL-1β, and IL-6. This is the first documented report of the unilateral pyogranulomatous ocular lesion in a Gentoo penguin chick, living in its natural habitat in Antarctica. This report also describes the isolation of four bacteria from the infected eye, which are considered to belong to novel Genus, species, or taxa. The primary bacterial pathogen that caused the ocular lesion was not able to be detected and remains unclear.

The Gentoo penguin (Pygoscelis papua) is the most abundant penguin species in Antarctica and the sub-Antarctic islands due to its generalist foraging ecology. Previous studies indicate that the broad diet in Gentoo penguins mainly result from sexual niche segregation caused by its foraging ecology. However, differences in food metabolism and absorption between Gentoo penguins of different genders have been ignored. Gut microbiota of animals plays a vital role in the digestion, absorption, and metabolism of nutrients from diets. Here, captive Gentoo penguins were used to reveal the sexual niche segregation of gut microbiota. The results showed that both the composition and function of gut microbiota composition between male and female Gentoo penguins were significantly distinct. Moreover, a higher degree of individual differences in gut microbiota were found in female Gentoo penguins than in males and a greater impact of sexual maturity on gut microbiota was also observed in females. The family of Lachnospiraceae and C5-branched dibasic acid metabolism were more abundant in the gut microbiota of male Gentoo penguins, indicating a higher carbohydrate metabolic capacity in males. In contrast, Fusobacteriaceae and the d-alanine pathway were enriched in females, suggesting that female Gentoo penguins have a greater capacity to metabolize proteins. Because the captive Gentoo penguins were living in the same environment and feeding on consistent diets, the gender-related differences in gut microbiota observed in the present study could be a genetic characteristic of this species.

Ecological theory predicts that animals with similar foraging strategies should not be able to co-exist without segregating either in space, time or diet. In communities, intra-specific competition is thought to be more intense than the competition among species, because of the lack of niche partitioning between conspecifics. Hence, while different seabird species can overlap in their foraging distribution, intra-specific competition can drive the neighboring populations of the same species to spatial segregation of foraging areas. To investigate ecological segregation within and among species of diving seabirds, we used a multi-species GPS-tracking approach of seabirds of four species on a small island in the Southwest Atlantic. The present study goes beyond previous work by analyzing simultaneous effects of species and colonies. We observed strikingly strong spatial foraging segregation among birds of the same species, breeding in colonies as close as 2 km from each other. Conspecifics from neighboring colonies used foraging places adjacent to their own colony, and there was little or no overlap with birds from the other colony. A zone with increased predator concentration was completely avoided during foraging trips, likely contributing to the spatial segregation. In addition to spatial segregation, we also observed intra-specific differences in other components of foraging behavior, such as time of day, dive depth and diet. These were most likely caused by optimal foraging of individuals in relation to habitat differences on a local scale, leading to a complex pattern of interactions with environmental covariates, in particular foraging daytime, foraging water layer temperature and depth, distance to coast and bathymetric depth of foraging areas. As mechanisms leading to the spatial segregation we propose a combination of optimal foraging and avoidance of predation.

Weddell seals ( Leptonychotes weddellii ) typically prey on fish, cephalopods, and invertebrates. While other seal species also include penguins as part of their regular diet, such as leopard seals, this behavior seems unusual for Weddell seals. Here, we describe an opportunistic observation of a Weddell seal attacking and killing a Gentoo Penguin ( Pygoscelis papua ) at Neko Harbour, Antarctic Peninsula. This behavior has rarely been observed and published. Yet, we collected several additional anecdotal observations from various regions around Antarctica, indicating that this behavior might be more common than previously assumed, challenging our current understanding of Weddell seal foraging ecology.

Fast climate changes in the western Antarctic Peninsula are reducing krill density, which along with increased fishing activities in recent decades, may have had synergistic effects on penguin populations. We tested that assumption by crossing data on fishing activities and Southern Annular Mode (an indicator of climate change in Antarctica) with penguin population data. Increases in fishing catch during the non-breeding period were likely to result in impacts on both chinstrap (Pygoscelis antarcticus) and gentoo (P. papua) populations. Catches and climate change together elevated the probability of negative population growth rates: very high fishing catch on years with warm winters and low sea ice (associated with negative Southern Annular Mode values) implied a decrease in population size in the following year. The current management of krill fishery in the Southern Ocean takes into account an arbitrary and fixed catch limit that does not reflect the variability of the krill population under effects of climate change, therefore affecting penguin populations when the environmental conditions were not favorable.

Specialization is a common mechanism of niche differentiation that can lead to ecological co-existence among species. However, species with specialized habitat or dietary requirements often exhibit a high degree of sensitivity to environmental change. Understanding patterns of specialization and niche segregation among Antarctic marine predators is of increased importance because of recent climate-driven reductions in a key prey species, Antarctic krill Euphausia superba. We examined the stomach contents and stable isotope values of sympatric chinstrap Pygoscelis antarctica and gentoo P. papua penguins across 5 breeding seasons at Cape Shirreff, Livingston Island, Antarctica. Our goal was to examine foraging niche segregation and the degree of specialization between species during the chick-rearing period. Dietary and isotopic foraging niches indicated consistent niche partitioning with higher krill consumption and greater use of offshore foraging habitats by chinstrap relative to gentoo penguins. While chinstrap penguin diets were dominated by krill with little variation, gentoo penguins exhibited broader dietary and isotopic niches with a higher degree of variation. There was little evidence that shifts in the availability of adult krill influenced penguin diets or foraging niches during our study, though the contrasting foraging strategies identified provide insight into the differing population trends observed between penguin species. The narrower foraging niche observed in declining chinstrap penguin populations indicates that they are likely highly sensitive to declines in the abundance of Antarctic krill. In contrast, the generalist niche exhibited by recently expanding gentoo penguin populations is likely better suited to the rapidly changing environmental conditions in the Antarctic Peninsula.